OMERO and Research Data Management Workshop at the Georg-Speyer-Haus in Frankfurt 09-10/12/2025.

Colllection of slides and materials for the OMERO and Research Data Management Workshop at the Georg-Speyer-Haus in Frankfurt.

funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under the National Research Data Infrastructure – NFDI 46/1 – 501864659

Program

Dec 9th 2025 – Day 1 (Everyone) 

10.00 a.m.: Introduction and Welcome

10.15 a.m.: FAIR data management and OMERO introduction

11.15 a.m.: Data organization in OMERO using Tags

12.00 a.m.: Lunch Break

01.00 p.m.: Metadata annotation in OMERO using Key-Value Pairs

02.00 p.m.: OMERO and image analysis
  -access through GUI-based plugins
  -access through the API
  Macros and python scripts for data analysis and interrogation
  AI-models at a glance (e.g., segmentation)

03.30 p.m.: Break

04.00 p.m.: OMERO.figure

04.45 p.m.: A glance at data sharing in public repositories

05.15 p.m.: Time for questions and individual case discussions

~ 05.30 /05.45 p.m.: End of Day 1

Dec. 10th 2025 - Day 2 (IT staff and project management)

09:00 a.m. ~ 10:00 a.m.: OMERO practical

Short break

- OMERO technical setup:

~ 10:45 a.m. ~ 12:00 a.m.: OMERO and storage

~ 12:00 a.m. ~ 12.30 a.m.: OMERO and HPC 

12.30 a.m.: Lunch Break

1.00 p.m. ~ 1.30 p.m.:  User Groups, User handling, pilot user phases to set up OMERO