LICENSE
README.rst
setup.py
TADphys.egg-info/PKG-INFO
TADphys.egg-info/SOURCES.txt
TADphys.egg-info/dependency_links.txt
TADphys.egg-info/top_level.txt
src/3d-lib/squared_distance_matrix_calculation_py.c
tadphys/Chromosome_region.py
tadphys/__init__.py
tadphys/_version.py
tadphys/chromosome.py
tadphys/experiment.py
tadphys/hic_data.py
tadphys/modelling/HIC_CONFIG.py
tadphys/modelling/LAMMPS_CONFIG.py
tadphys/modelling/__init__.py
tadphys/modelling/impoptimizer.py
tadphys/modelling/lammps_modelling.py
tadphys/modelling/lammpsmodel.py
tadphys/modelling/restraints.py
tadphys/modelling/structuralmodel.py
tadphys/utils/__init__.py
tadphys/utils/extraviews.py
tadphys/utils/hic_filtering.py
tadphys/utils/hic_parser.py
tadphys/utils/maths.py
tadphys/utils/modelAnalysis.py
tadphys/utils/tadmaths.py
test/test_TADdyn_on_Sox2.py