Table 2. Partition scheme used in the phylogenetic analyses.

Dataset	Region	Codon position	Model
Hypocreales dataset	LSU	—	GTR+I+G
	tef-1	The first codon position	TVM+I+G
	tef-1	The second codon position	TVM+I+G
	tef-1	The third codon position	GTR+I+G
	rpb1	The first codon position	GTR+I+G
	rpb1	The second codon position	TVM+I+G
	rpb1	The third codon position	TVM+I+G
	rpb2	The first codon position	GTR+I+G
	rpb2	The second codon position	TVMEF+I+G
	rpb2	The third codon position	GTR+I+G
	tub2	The first codon position	GTR+I+G
	tub2	The second codon position	TRNEF+G
	tub2	The third codon position	SYM+I+G
Paranectriaceae dataset	5.8S	—	TRNEF+I+G
	LSU	—	TRNEF+I+G
	nuSSU	—	K80-I
	tef-1	The first codon position	TIM+I+G
	tef-1	The second codon position	TIM+I+G
	tef-1	The third codon position	GTR+G
	rpb1	The first codon position	TIM+I+G
	rpb1	The second codon position	TRNEF+I+G
	rpb1	The third codon position	TVM+G