{"metadata":{"related_identifiers":[{"relation":"isAlternateIdentifier","identifier":"hash://md5/6c194df8ddb37844f7b4f1258c81d93d"},{"relation":"isAlternateIdentifier","identifier":"urn:lsid:globalbioticinteractions.org:dataset:globalbioticinteractions/vertnet"},{"relation":"hasVersion","identifier":"hash://md5/6c194df8ddb37844f7b4f1258c81d93d"},{"relation":"isCompiledBy","identifier":"10.5281/zenodo.14927734","resource_type":"software"},{"relation":"isCompiledBy","identifier":"10.5281/zenodo.14893840","resource_type":"software"},{"relation":"isCompiledBy","identifier":"10.5281/zenodo.14662206","resource_type":"software"}],"communities":[{"identifier":"globi-review"}],"upload_type":"publication","creators":[{"name":"Elton"},{"name":"Nomer"},{"name":"Preston"}],"publication_type":"datapaper","title":"Versioned Archive and Review of Biotic Interactions and Taxon Names Found within globalbioticinteractions/vertnet hash://md5/6c194df8ddb37844f7b4f1258c81d93d","publication_date":"2025-08-21","keywords":["biodiversity informatics","ecology","species interactions","biotic interactions","automated manuscripts","taxonomic names","taxonomic name alignment","biology"],"description":"Life on Earth is sustained by complex interactions between organisms and their environment. These biotic interactions can be captured in datasets and published digitally. We present a review and archiving process for such an openly accessible digital interactions dataset of known origin and discuss its outcome. The dataset under review, named globalbioticinteractions/vertnet, has fingerprint hash://md5/6c194df8ddb37844f7b4f1258c81d93d, is 2.58GiB in size and contains 221,606 interactions with 10 unique types of associations (e.g., parasiteOf) between 8,216 primary taxa (e.g., Arthropoda) and 30,238 associated taxa (e.g., Acari). This report includes detailed summaries of interaction data, a taxonomic review from multiple catalogs, and an archived version of the dataset from which the reviews are derived.\n","additional_descriptions":[{"type":{"id":"technical-info"},"description":"

Introduction

\n

Data Review and Archive

\n

Data review and archiving can be a time-consuming process, especially\nwhen done manually. This review report aims to help facilitate both\nactivities. It automates the archiving of datasets, including Darwin\nCore archives, and is a citable backup of a version of the dataset.\nAdditionally, an automatic review of species interaction claims made in\nthe dataset is generated and registered with Global Biotic Interactions\n(J. H. Poelen, Simons,\nand Mungall 2014).

\n

This review includes summary statistics about, and observations\nabout, the dataset under review :

\n
\n

Alabama Museum of Natural History Invertebrate Zoology (Arctos) -\nVersion 1.34 https://ipt.vertnet.org/archive.do?r=almnh_inv\n2025-08-20T17:30:21.015Z Angelo State Natural History Collections\n(ASNHC) Bird specimens (Arctos) - Version 1.66\nhttps://ipt.vertnet.org/archive.do?r=asnhc_bird 2025-08-20T17:30:21.015Z\nAngelo State Natural History Collections (ASNHC) Mammal specimens\n(Arctos) - Version 1.64 https://ipt.vertnet.org/archive.do?r=asnhc_mamm\n2025-08-20T17:30:21.015Z Austin Peay State University Amphibian and\nReptile Specimens (Arctos) - Version 1.30\nhttps://ipt.vertnet.org/archive.do?r=apsu_herp 2025-08-20T17:30:21.015Z\nAustin Peay State University Fish Specimens (Arctos) - Version 1.30\nhttps://ipt.vertnet.org/archive.do?r=apsu_fish 2025-08-20T17:30:21.015Z\nBrigham Young University (BYU) Herpetology Collection (Arctos) - Version\n3.25 https://ipt.vertnet.org/archive.do?r=byu_herps\n2025-08-20T17:30:21.015Z CHAS Botany Collection (Arctos) - Version 13.99\nhttps://ipt.vertnet.org/archive.do?r=chas_herb 2025-08-20T17:30:21.015Z\nCHAS Entomology Collection (Arctos) - Version 13.99\nhttps://ipt.vertnet.org/archive.do?r=chas_ento 2025-08-20T17:30:21.015Z\nCHAS Malacology Collection (Arctos) - Version 13.100\nhttps://ipt.vertnet.org/archive.do?r=chas_inv 2025-08-20T17:30:21.015Z\nCHAS Mammalogy Collection (Arctos) - Version 13.96\nhttps://ipt.vertnet.org/archive.do?r=chas_mammals\n2025-08-20T17:30:21.015Z CHAS Oology Collection (Arctos) - Version 14.98\nhttps://ipt.vertnet.org/archive.do?r=chas_eggsnest\n2025-08-20T17:30:21.015Z CHAS Ornithology (Arctos) - Version 2.96\nhttps://ipt.vertnet.org/archive.do?r=chas_birds 2025-08-20T17:30:21.015Z\nKWP Lepidoptera Collection (Arctos) - Version 1.99\nhttps://ipt.vertnet.org/archive.do?r=kwp_lepidoptera\n2025-08-20T17:30:21.015Z MSB Amphibian and Reptile Collection (Arctos) -\nVersion 1.94 https://ipt.vertnet.org/archive.do?r=msb_herp\n2025-08-20T17:30:21.015Z MSB Bird Collection (Arctos) - Version 35.98\nhttps://ipt.vertnet.org/archive.do?r=msb_bird 2025-08-20T17:30:21.015Z\nMSB Fish Collection (Arctos) - Version 1.81\nhttps://ipt.vertnet.org/archive.do?r=msb_fish 2025-08-20T17:30:21.015Z\nMSB Mammal Collection (Arctos) - Version 35.100\nhttps://ipt.vertnet.org/archive.do?r=msb_mamm 2025-08-20T17:30:21.015Z\nMSB Parasite Collection (Arctos) - Version 32.98\nhttps://ipt.vertnet.org/archive.do?r=msb_para 2025-08-20T17:30:21.015Z\nMVZ Bird Collection (Arctos) - Version 43.96\nhttps://ipt.vertnet.org/archive.do?r=mvz_bird 2025-08-20T17:30:21.015Z\nMVZ Bird Observations (Arctos) - Version 34.104\nhttps://ipt.vertnet.org/archive.do?r=mvzobs_bird\n2025-08-20T17:30:21.015Z MVZ Egg and Nest Collection (Arctos) - Version\n37.100 https://ipt.vertnet.org/archive.do?r=mvz_egg\n2025-08-20T17:30:21.015Z MVZ Herp Collection (Arctos) - Version 36.96\nhttps://ipt.vertnet.org/archive.do?r=mvz_herp 2025-08-20T17:30:21.015Z\nMVZ Herp Observations (Arctos) - Version 37.100\nhttps://ipt.vertnet.org/archive.do?r=mvzobs_herp\n2025-08-20T17:30:21.015Z MVZ Mammal Collection (Arctos) - Version 35.97\nhttps://ipt.vertnet.org/archive.do?r=mvz_mammal 2025-08-20T17:30:21.015Z\nNorthern Michigan University (NMU) Bird specimens (Arctos) - Version\n1.92 https://ipt.vertnet.org/archive.do?r=nmu_bird\n2025-08-20T17:30:21.015Z Northern Michigan University (NMU) Mammal\nSpecimens (Arctos) - Version 1.95\nhttps://ipt.vertnet.org/archive.do?r=nmu_mamm 2025-08-20T17:30:21.015Z\nNorthern Michigan University (NMU) Parasite specimens (Arctos) - Version\n1.21 https://ipt.vertnet.org/archive.do?r=nmu_para\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Amphibian Specimens\n(Arctos) - Version 1.42 https://ipt.vertnet.org/archive.do?r=owu_amph\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Bird Specimens\n(Arctos) - Version 1.46 https://ipt.vertnet.org/archive.do?r=owu_bird\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Fish Specimens\n(Arctos) - Version 1.46 https://ipt.vertnet.org/archive.do?r=owu_fish\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Invertebrate Specimens\n(Arctos) - Version 1.46 https://ipt.vertnet.org/archive.do?r=owu_inv\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Parasite Specimens\n(Arctos) - Version 1.50 https://ipt.vertnet.org/archive.do?r=owu_para\n2025-08-20T17:30:21.015Z Ohio Wesleyan University Reptile Specimens\n(Arctos) - Version 1.45 https://ipt.vertnet.org/archive.do?r=owu_rept\n2025-08-20T17:30:21.015Z TEST_MSB Mammal Collection (Arctos)_TEST -\nVersion 35.107\nhttps://ipt.vertnet.org/archive.do?r=test_ggbn_msbmamm_test\n2025-08-20T17:30:21.015Z Trinity College Dublin Geological Museum\nPaleontology specimens (Arctos) - Version 1.26\nhttps://ipt.vertnet.org/archive.do?r=tcdgm_paleo\n2025-08-20T17:30:21.015Z UAM Bird Collection (Arctos) - Version 31.97\nhttps://ipt.vertnet.org/archive.do?r=uam_bird 2025-08-20T17:30:21.015Z\nUAM Earth Sciences Collection (Arctos) - Version 31.102\nhttps://ipt.vertnet.org/archive.do?r=uam_es 2025-08-20T17:30:21.015Z UAM\nFish Collection (Arctos) - Version 34.99\nhttps://ipt.vertnet.org/archive.do?r=uam_fish 2025-08-20T17:30:21.015Z\nUAM Herbarium (ALA), Algae Collection (Arctos) - Version 8.100\nhttps://ipt.vertnet.org/archive.do?r=uam_alg 2025-08-20T17:30:21.015Z\nUAM Herbarium (ALA), Cryptogam Collection (Arctos) - Version 33.99\nhttps://ipt.vertnet.org/archive.do?r=uamb_herb_cryptogam\n2025-08-20T17:30:21.015Z UAM Herbarium (ALA), Vascular Plant Collection\n(Arctos) - Version 38.99\nhttps://ipt.vertnet.org/archive.do?r=uam_herb_vascular\n2025-08-20T17:30:21.015Z UAM Herpetology Collection (Arctos) - Version\n31.100 https://ipt.vertnet.org/archive.do?r=uam_herp\n2025-08-20T17:30:21.015Z UAM Insect Collection (Arctos) - Version 39.100\nhttps://ipt.vertnet.org/archive.do?r=uam_ento 2025-08-20T17:30:21.015Z\nUAM Insect Observations (Arctos) - Version 36.98\nhttps://ipt.vertnet.org/archive.do?r=uamobs_ento\n2025-08-20T17:30:21.015Z UAM Mammal Collection (Arctos) - Version 34.96\nhttps://ipt.vertnet.org/archive.do?r=uam_mamm 2025-08-20T17:30:21.015Z\nUAM Mammal Observations (Arctos) - Version 31.100\nhttps://ipt.vertnet.org/archive.do?r=uamobs_mamm\n2025-08-20T17:30:21.015Z UCM Parasite Specimens (Arctos) - Version 1.11\nhttps://ipt.vertnet.org/archive.do?r=ucm_para 2025-08-20T17:30:21.015Z\nUniversity of Montana Zoological Museum (UMZM) Bird Specimens (Arctos) -\nVersion 1.28 https://ipt.vertnet.org/archive.do?r=umzm_bird\n2025-08-20T17:30:21.015Z University of Montana Zoological Museum (UMZM)\nMammal Specimens (Arctos) - Version 1.26\nhttps://ipt.vertnet.org/archive.do?r=umzm_mamm 2025-08-20T17:30:21.015Z\nUniversity of Nevada, Reno (UNR) Amphibian and Reptile Specimens\n(Arctos) - Version 10.25 https://ipt.vertnet.org/archive.do?r=unr_herps\n2025-08-20T17:30:21.015Z University of Nevada, Reno (UNR) Bird specimens\n(Arctos) - Version 1.24 https://ipt.vertnet.org/archive.do?r=unr_bird\n2025-08-20T17:30:21.015Z University of Nevada, Reno (UNR) Mammal\nSpecimens (Arctos) - Version 4.23\nhttps://ipt.vertnet.org/archive.do?r=unr_mammals\n2025-08-20T17:30:21.015Z University of North Carolina Greensboro Mammal\nCollection (Arctos) - Version 1.35\nhttps://ipt.vertnet.org/archive.do?r=uncg_mamm 2025-08-20T17:30:21.015Z\nUniversity of North Carolina Greensboro Parasite Collection (Arctos) -\nVersion 1.4 https://ipt.vertnet.org/archive.do?r=uncg_para\n2025-08-20T17:30:21.015Z Washington State University, Charles R. Conner\nMuseum Bird Specimens (Arctos) - Version 1.20\nhttps://ipt.vertnet.org/archive.do?r=crcm_bird 2025-08-20T17:30:21.015Z\nWNMU Bird Collection (Arctos) - Version 31.99\nhttps://ipt.vertnet.org/archive.do?r=wnmu_bird 2025-08-20T17:30:21.015Z\nWNMU Mammal Collection (Arctos) - Version 32.99\nhttps://ipt.vertnet.org/archive.do?r=wnmu_mamm 2025-08-20T17:30:21.015Z\nhash://md5/6c194df8ddb37844f7b4f1258c81d93d

\n
\n

For additional metadata related to this dataset, please visit https://github.com/globalbioticinteractions/vertnet\nand inspect associated metadata files including, but not limited to,\nREADME.md, eml.xml, and/or globi.json.

\n

Methods

\n

The review is performed through programmatic scripts that leverage\ntools like Preston (Elliott\net al. 2025), Elton (Kuhn, Poelen, and Leinweber 2025), Nomer\n(Salim and Poelen\n2025), globinizer (J. Poelen, Seltmann, and Mietchen 2024)\ncombined with third-party tools like grep, mlr, tail and head.

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Tools used in this review process
tool nameversion
preston0.10.1
elton0.15.13
nomer0.5.17
globinizer0.4.0
mlr6.0.0
jq1.6
yq4.25.3
pandoc3.1.6.1
duckdb1.3.1
\n

The review process can be described in the form of the script below\n1.

\n
# get versioned copy of the dataset (size approx. 2.58GiB) under review \nelton pull globalbioticinteractions/vertnet\n\n# generate review notes\nelton review globalbioticinteractions/vertnet\\\n > review.tsv\n\n# export indexed interaction records\nelton interactions globalbioticinteractions/vertnet\\\n > interactions.tsv\n\n# export names and align them with the Catalogue of Life using Nomer \nelton names globalbioticinteractions/vertnet\\\n | nomer append col\\\n > name-alignment.tsv
\n

or visually, in a process diagram.

\n
\n\"Review\n
Review Process Overview
\n
\n

You can find a copy of the full review script at check-data.sh. See also GitHub\nand Codeberg.

\n

Results

\n

In the following sections, the results of the review are summarized\n2. Then, links to the detailed review\nreports are provided.

\n

Files

\n

The following files are produced in this review:

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
filenamedescription
biblio.biblist of bibliographic reference of this review
check-dataset.shdata review workflow/process as expressed in a bash script
data.zipa versioned archive of the data under review
HEADthe digital signature of the data under review
index.docxreview in MS Word format
index.htmlreview in HTML format
index.mdreview in Pandoc markdown format
index.pdfreview in PDF format
indexed-citations.csv.gzlist of distinct reference citations for reviewed species\ninteraction claims in gzipped comma-separated values file format
indexed-citations.html.gzlist of distinct reference citations for reviewed species\ninteractions claims in gzipped html file format
indexed-citations.tsv.gzlist of distinct reference citations for reviewed species\ninteraction claims in gzipped tab-separated values format
indexed-interactions-col-family-col-family.svgnetwork diagram showing the taxon family to taxon family interaction\nclaims in the dataset under review as interpreted by the Catalogue of\nLife via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024)
indexed-interactions-col-kingdom-col-kingdom.svgnetwork diagram showing the taxon kingdom to taxon kingom\ninteraction claims in the dataset under review as interpreted by the\nCatalogue of Life via Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen\n2024)
indexed-interactions.csv.gzspecies interaction claims indexed from the dataset under review in\ngzipped comma-separated values format
indexed-interactions.html.gzspecies interaction claims indexed from the dataset under review in\ngzipped html format
indexed-interactions.tsv.gzspecies interaction claims indexed from the dataset under review in\ngzipped tab-separated values format
indexed-interactions.parquetspecies interaction claims indexed from the dataset under review in\nApache Parquet format
indexed-interactions-sample.csvlist of species interaction claims indexed from the dataset under\nreview in gzipped comma-separated values format
indexed-interactions-sample.htmlfirst 500 species interaction claims indexed from the dataset under\nreview in html format
indexed-interactions-sample.tsvfirst 500 species interaction claims indexed from the dataset under\nreview in tab-separated values format
indexed-names.csv.gztaxonomic names indexed from the dataset under review in gzipped\ncomma-separated values format
indexed-names.html.gztaxonomic names found in the dataset under review in gzipped html\nformat
indexed-names.tsv.gztaxonomic names found in the dataset under review in gzipped\ntab-separated values format
indexed-names.parquettaxonomic names found in the dataset under review in Apache Parquet\nformat
indexed-names-resolved-col.csv.gztaxonomic names found in the dataset under review aligned with the\nCatalogue of Life as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped comma-separated values format
indexed-names-resolved-col.html.gztaxonomic names found in the dataset under review aligned with the\nCatalogue of Life as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped html format
indexed-names-resolved-col.tsv.gztaxonomic names found in the dataset under review aligned with the\nCatalogue of Life as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped tab-separated values format
indexed-names-resolved-col.parquettaxonomic names found in the dataset under review aligned with the\nCatalogue of Life as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in Apache Parquet format
indexed-names-resolved-discoverlife.csv.gztaxonomic names found in the dataset under review aligned with\nDiscover Life bee species checklist as accessed through the Nomer Corpus\nof Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ncomma-separated values format
indexed-names-resolved-discoverlife.html.gztaxonomic names found in the dataset under review aligned with\nDiscover Life bee species checklist as accessed through the Nomer Corpus\nof Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\nhtml format
indexed-names-resolved-discoverlife.tsv.gztaxonomic names found in the dataset under review aligned with\nDiscover Life bee species checklist as accessed through the Nomer Corpus\nof Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ntab-separated values format
indexed-names-resolved-discoverlife.parquettaxonomic names found in the dataset under review aligned with\nDiscover Life bee species checklist as accessed through the Nomer Corpus\nof Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache\nParquet format
indexed-names-resolved-gbif.csv.gztaxonomic names found in the dataset under review aligned with GBIF\nBackbone Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped comma-separated values format
indexed-names-resolved-gbif.html.gztaxonomic names found in the dataset under review aligned with GBIF\nBackbone Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped html format
indexed-names-resolved-gbif.tsv.gztaxonomic names found in the dataset under review aligned with GBIF\nBackbone Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped tab-separated values format
indexed-names-resolved-gbif.parquettaxonomic names found in the dataset under review aligned with GBIF\nBackbone Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in Apache Parquet format
indexed-names-resolved-itis.csv.gztaxonomic names found in the dataset under review aligned with\nIntegrated Taxonomic Information System (ITIS) as accessed through the\nNomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ncomma-separated values format
indexed-names-resolved-itis.html.gztaxonomic names found in the dataset under review aligned with\nIntegrated Taxonomic Information System (ITIS) as accessed through the\nNomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\nhtml format
indexed-names-resolved-itis.tsv.gztaxonomic names found in the dataset under review aligned with\nIntegrated Taxonomic Information System (ITIS) as accessed through the\nNomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ntab-separated values format
indexed-names-resolved-itis.parquettaxonomic names found in the dataset under review aligned with\nIntegrated Taxonomic Information System (ITIS) as accessed through the\nNomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache\nParquet format
indexed-names-resolved-mdd.csv.gztaxonomic names found in the dataset under review aligned with the\nMammal Diversity Database as accessed through the Nomer Corpus of\nTaxonomic Resources (J.\nH. (ed. ). Poelen 2024) in gzipped comma-separated values\nformat
indexed-names-resolved-mdd.html.gztaxonomic names found in the dataset under review aligned with\nMammal Diversity Database as accessed through the Nomer Corpus of\nTaxonomic Resources (J.\nH. (ed. ). Poelen 2024) in gzipped html format
indexed-names-resolved-mdd.tsv.gztaxonomic names found in the dataset under review aligned with\nMammal Diversity Database as accessed through the Nomer Corpus of\nTaxonomic Resources (J.\nH. (ed. ). Poelen 2024) in gzipped tab-separated values\nformat
indexed-names-resolved-mdd.parquettaxonomic names found in the dataset under review aligned with\nMammal Diversity Database as accessed through the Nomer Corpus of\nTaxonomic Resources (J.\nH. (ed. ). Poelen 2024) in Apache Parquet format
indexed-names-resolved-ncbi.csv.gztaxonomic names found in the dataset under review aligned with the\nNCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped comma-separated values format
indexed-names-resolved-ncbi.html.gztaxonomic names found in the dataset under review aligned with the\nNCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped html format
indexed-names-resolved-ncbi.tsv.gztaxonomic names found in the dataset under review aligned with the\nNCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped tab-separated values format
indexed-names-resolved-ncbi.parquettaxonomic names found in the dataset under review aligned with the\nNCBI Taxonomy as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in Apache Parquet format
indexed-names-resolved-pbdb.csv.gztaxonomic names found in the dataset under review aligned with the\nPaleobiology Database as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped comma-separated values format
indexed-names-resolved-pbdb.html.gztaxonomic names found in the dataset under review aligned with\nPaleobiology Database as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped html format
indexed-names-resolved-pbdb.tsv.gztaxonomic names found in the dataset under review aligned with\nPaleobiology Database as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped tab-separated values format
indexed-names-resolved-pbdb.parquettaxonomic names found in the dataset under review aligned with\nPaleobiology Database as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in Apache Parquet format
indexed-names-resolved-tpt.csv.gztaxonomic names found in the dataset under review aligned with the\nTerrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed\nthrough the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ncomma-separated values format
indexed-names-resolved-tpt.html.gztaxonomic names found in the dataset under review aligned with the\nTerrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed\nthrough the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\nhtml format
indexed-names-resolved-tpt.tsv.gztaxonomic names found in the dataset under review aligned with the\nTerrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed\nthrough the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ntab-separated values format
indexed-names-resolved-tpt.parquettaxonomic names found in the dataset under review aligned with the\nTerrestrial Parasite Tracker (TPT) Taxonomic Resource as accessed\nthrough the Nomer Corpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache\nParquet format
indexed-names-resolved-wfo.csv.gztaxonomic names found in the dataset under review aligned with the\nWorld of Flora Online as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped comma-separated values format
indexed-names-resolved-wfo.html.gztaxonomic names found in the dataset under review aligned with the\nWorld of Flora Online as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped html format
indexed-names-resolved-wfo.tsv.gztaxonomic names found in the dataset under review aligned with the\nWorld of Flora Online as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in gzipped tab-separated values format
indexed-names-resolved-wfo.parquettaxonomic names found in the dataset under review aligned with the\nWorld of Flora Online as accessed through the Nomer Corpus of Taxonomic\nResources (J. H. (ed. ).\nPoelen 2024) in Apache Parquet format
indexed-names-resolved-worms.csv.gztaxonomic names found in the dataset under review aligned with the\nWorld Register of Marine Species (WoRMS) as accessed through the Nomer\nCorpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ncomma-separated values format
indexed-names-resolved-worms.html.gztaxonomic names found in the dataset under review aligned with the\nWorld Register of Marine Species (WoRMS) as accessed through the Nomer\nCorpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\nhtml format
indexed-names-resolved-worms.tsv.gztaxonomic names found in the dataset under review aligned with the\nWorld Register of Marine Species (WoRMS) as accessed through the Nomer\nCorpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in gzipped\ntab-separated values format
indexed-names-resolved-worms.parquettaxonomic names found in the dataset under review aligned with the\nWorld Register of Marine Species (WoRMS) as accessed through the Nomer\nCorpus of Taxonomic Resources (J. H. (ed. ). Poelen 2024) in Apache\nParquet format
indexed-names-sample.csvfirst 500 taxonomic names found in the dataset under review in\ncomma-separated values format
indexed-names-sample.htmlfirst 500 taxonomic names found in the dataset under review in html\nformat
indexed-names-sample.tsvfirst 500 taxonomic names found in the dataset under review in\ntab-separated values format
interaction.svgdiagram summarizing the data model used to index species interaction\nclaims
nanopub-sample.trigfirst 500 species interaction claims as expressed in the nanopub\nformat (Kuhn and Dumontier\n2014)
nanopub.trig.gzspecies interaction claims as expressed in the nanopub format (Kuhn and Dumontier\n2014)
process.svgdiagram summarizing the data review processing workflow
prov.nqorigin of the dataset under review as expressed in rdf/nquads
review.csv.gzreview notes associated with the dataset under review in gzipped\ncomma-separated values format
review.html.gzreview notes associated with the dataset under review in gzipped\nhtml format
review.tsv.gzreview notes associated with the dataset under review in gzipped\ntab-separated values format
review-sample.csvfirst 500 review notes associated with the dataset under review in\ncomma-separated values format
review-sample.htmlfirst 500 review notes associated with the dataset under review in\nhtml format
review-sample.tsvfirst 500 review notes associated with the dataset under review in\ntab-separated values format
review.svga review badge generated as part of the dataset review process
zenodo.jsonmetadata of this review expressed in Zenodo record metadata
\n

Archived Dataset

\n

Note that data.zip file in this\narchive contains the complete, unmodified archived dataset under\nreview.

\n

Biotic Interactions

\n
\n\"Biotic\n
Biotic Interaction Data\nModel
\n
\n

In this review, biotic interactions (or biotic associations) are\nmodeled as a primary (aka subject, source) organism interacting with an\nassociate (aka object, target) organism. The dataset under review\nclassified the primary/associate organisms with specific taxa. The\nprimary and associate organisms The kind of interaction is documented as\nan interaction type.

\n

The dataset under review, named globalbioticinteractions/vertnet, has\nfingerprint hash://md5/6c194df8ddb37844f7b4f1258c81d93d, is 2.58GiB in\nsize and contains 221,606 interactions with 10 unique types of\nassociations (e.g., parasiteOf) between 8,216 primary taxa (e.g.,\nArthropoda) and 30,238 associated taxa (e.g., Acari).

\n

An exhaustive list of indexed interaction claims can be found in\ngzipped csv, tsv and parquet archives. To facilitate\ndiscovery, a preview of claims available in the gzipped html page at indexed-interactions.html.gz are\nshown below.

\n

The exhaustive list was used to create the following data summaries\nbelow.

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Sample of Indexed Interaction Claims
sourceTaxonNameinteractionTypeNametargetTaxonNamereferenceCitation
Leptotrombidium peromysciparasiteOfPeromyscus leucopushttps://arctos.database.museum/guid/UNCG:Para:8
Androlaelaps fahrenholziinteractsWithHoplopleura hirsutahttps://arctos.database.museum/guid/UNCG:Para:114
Androlaelaps fahrenholziparasiteOfSigmodon hispidushttps://arctos.database.museum/guid/UNCG:Para:114
Hoplopleura hirsutainteractsWithAndrolaelaps fahrenholzihttps://arctos.database.museum/guid/UNCG:Para:113
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Most Frequently Mentioned Interaction Types (up to 20 most\nfrequent)
interactionTypeNamecount
parasiteOf70860
hasParasite69537
interactsWith40413
adjacentTo24128
coOccursWith9627
hasHost4546
killedBy2111
eats330
eatenBy50
visits4
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Most Frequently Mentioned Primary Taxa (up to 20 most\nfrequent)
sourceTaxonNamecount
Arthropoda14623
Acari7252
Siphonaptera6499
Peromyscus maniculatus6186
Myodes rutilus5969
Dipodomys merriami5488
Peromyscus leucopus3336
Cestoda2938
Myodes gapperi2575
Bombus melanopygus2492
Nematoda2314
Peromyscus keeni2265
Microtus pennsylvanicus2144
Dipodomys ordii2133
Ochotona princeps2115
Sorex cinereus1913
Taenia1869
Microtus oeconomus1850
Phthiraptera1811
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Most Frequently Mentioned Associate Taxa (up to 20 most\nfrequent)
targetTaxonNamecount
Acari10542
Siphonaptera8977
Arthropoda8700
Myodes rutilus6265
Ixodida3070
Peromyscus keeni2852
Dipodomys merriami2734
Phthiraptera2662
Peromyscus maniculatus2392
Microtus oeconomus2290
Nematoda2196
Sorex cinereus2100
Chamerion angustifolium1857
Cestoda1600
Mastophorus dipodomis1563
Microtus pennsylvanicus1445
Heteromyoxyuris deserti1432
Hoplopleura arboricola1310
Chamerion1294
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Most Frequent Interactions between Primary and Associate Taxa\n(up to 20 most frequent)
sourceTaxonNameinteractionTypeNametargetTaxonNamecount
ArthropodaparasiteOfMyodes rutilus3275
ArthropodaparasiteOfPeromyscus keeni2166
Peromyscus maniculatushasParasiteSiphonaptera1832
Myodes rutilushasParasiteArthropoda1693
ArthropodaparasiteOfMicrotus oeconomus1626
ArthropodaparasiteOfSorex cinereus1099
Peromyscus keenihasParasiteArthropoda1083
SiphonapteraparasiteOfPeromyscus maniculatus982
Dipodomys merriamihasParasiteMastophorus dipodomis882
ArthropodaparasiteOfSorex monticolus867
Dipodomys merriamihasParasiteEimeria chobotari858
Microtus oeconomushasParasiteArthropoda816
Myodes rutilushasParasitePolyplax borealis813
Ochotona princepshasParasiteCtenophyllus armatus765
Myodes rutilushasParasiteAcari689
Dipodomys merriamihasParasitePterygodermatites dipodomis664
Polyplax borealisparasiteOfMyodes rutilus663
Bombus melanopygusadjacentToclover636
ArthropodaparasiteOfMicrotus pennsylvanicus613
\n

Interaction Networks

\n

The figures below provide a graph view on the dataset under review.\nThe first shows a summary network on the kingdom level, and the second\nshows how interactions on the family level. It is important to note that\nboth network graphs were first aligned taxonomically using the Catalogue\nof Life. Please refer to the original (or verbatim) taxonomic names for\na more original view on the interaction data.

\n
\n\n
Interactions on taxonomic kingdom rank as\ninterpreted by the Catalogue of Life download\nsvg
\n
\n
\n\n
Interactions on the taxonomic family rank\nas interpreted by the Catalogue of Life. download\nsvg
\n
\n

You can download the indexed dataset under review at indexed-interactions.csv.gz. A\ntab-separated file can be found at indexed-interactions.tsv.gz

\n

Learn more about the structure of this download at GloBI website, by\nopening a GitHub\nissue, or by sending an email.

\n

Another way to discover the dataset under review is by searching for\nit on the GloBI\nwebsite.

\n

Taxonomic Alignment

\n

As part of the review, all names are aligned against various name\ncatalogs (e.g., col, ncbi, discoverlife, gbif, itis, wfo, mdd, tpt,\npbdb, and worms). These alignments can help review name usage or aid in\nselecting of a suitable taxonomic name resource.

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Sample of Name Alignments
providedNamerelationNameresolvedCatalogNameresolvedName
SlopeNONEcolSlope
RockNONEcolRock
Diameter rock edgeNONEcolDiameter rock edge
Diameter mossy rockNONEcolDiameter mossy rock
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Distribution of Taxonomic Ranks of Aligned Names by Catalog.\nNames that were not aligned with a catalog are counted as NAs. So, the\ntotal number of unaligned names for a catalog will be listed in their NA\nrow.
resolvedCatalogNameresolvedRankcount
colNA9037
colclass15
colfamily178
colgenus833
colinfraorder1
colkingdom3
colnanorder2
colorder34
colparvorder1
colphylum7
colsection1
colspecies5227
colsubclass4
colsubfamily5
colsubgenus21
colsuborder1
colsubphylum1
colsubspecies589
colsuperfamily14
colsuperorder2
coltribe2
colunranked1
colvariety33
discoverlifeNA15854
discoverlifespecies53
gbifNA8255
gbifclass17
gbiffamily191
gbifform17
gbifgenus964
gbifkingdom3
gbiforder30
gbifphylum8
gbifspecies5801
gbifsubspecies708
gbifvariety137
itisNA9398
itisclass16
itisdivision2
itisfamily169
itisgenus717
itisinfraorder1
itiskingdom3
itisorder39
itisphylum8
itisspecies4778
itissubclass9
itissubfamily9
itissubgenus1
itissuborder7
itissubphylum3
itissubspecies668
itissuperfamily7
itissuperorder3
itistribe1
itisvariety81
mddNA15906
ncbiNA9395
ncbiclade2
ncbiclass17
ncbicohort1
ncbifamily184
ncbigenus865
ncbiinfraorder3
ncbikingdom2
ncbiorder34
ncbiphylum8
ncbispecies5122
ncbisubclass9
ncbisubfamily15
ncbisubgenus18
ncbisuborder6
ncbisubphylum2
ncbisubspecies213
ncbisuperfamily15
ncbisuperorder3
ncbitribe1
ncbivarietas14
pbdbNA14489
pbdbclass18
pbdbfamily130
pbdbgenus339
pbdbinformal1
pbdbinfraclass1
pbdbkingdom3
pbdborder32
pbdbphylum9
pbdbspecies840
pbdbsubclass3
pbdbsubfamily18
pbdbsuborder8
pbdbsubspecies11
pbdbsubtribe1
pbdbsuperclass1
pbdbsuperfamily9
pbdbsuperorder3
pbdbsuperphylum1
pbdbtribe2
pbdbunranked clade8
tptNA14630
tptfamily3
tptgenus63
tptorder2
tptspecies1208
wfoNA13403
wfofamily11
wfogenus308
wfophylum1
wfospecies2113
wfosubsection1
wfosubspecies73
wfovariety26
wormsNA13530
wormsclass16
wormsfamily161
wormsgenus528
wormsinfraorder1
wormskingdom3
wormsorder35
wormsphylum6
wormsphylum (division)1
wormsspecies1556
wormssubclass7
wormssubfamily4
wormssubgenus1
wormssuborder5
wormssubphylum2
wormssubspecies47
wormssuperfamily12
wormssuperorder2
wormsvariety11
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Name relationship types per catalog. Name relationship type\n“NONE” means that a name was not recognized by the associated catalog.\n“SAME_AS” indicates either a “HAS_ACCEPTED_NAME” or “SYNONYM_OF” name\nrelationship type. We recognize that “SYNONYM_OF” encompasses many types\nof nomenclatural synonymies (ICZN 1999) (e.g., junior synonym, senior\nsynonyms).
resolvedCatalogNamerelationNamecount
colNONE28972
colHAS_ACCEPTED_NAME11624
colSYNONYM_OF2882
discoverlifeNONE43929
discoverlifeHAS_ACCEPTED_NAME106
discoverlifeSYNONYM_OF24
discoverlifeHOMONYM_OF10
gbifNONE27768
gbifHAS_ACCEPTED_NAME14260
gbifSYNONYM_OF4887
itisNONE29736
itisHAS_ACCEPTED_NAME10876
itisSYNONYM_OF1656
mddNONE40106
mddHAS_ACCEPTED_NAME1751
mddSYNONYM_OF17
ncbiNONE31438
ncbiSAME_AS11702
ncbiSYNONYM_OF1009
ncbiCOMMON_NAME_OF12
pbdbNONE38102
pbdbHAS_ACCEPTED_NAME3688
pbdbSYNONYM_OF285
tptNONE38182
tptHAS_ACCEPTED_NAME3765
tptSYNONYM_OF217
wfoNONE37495
wfoSYNONYM_OF1117
wfoHAS_ACCEPTED_NAME3754
wfoHAS_UNCHECKED_NAME406
wormsNONE37319
wormsHAS_ACCEPTED_NAME4383
wormsSYNONYM_OF641
\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
List of Available Name Alignment Reports
catalog namealignment results
colassociated names alignments report in gzipped html, csv, and tsv)
ncbiassociated names alignments report in gzipped html, csv, and tsv)
discoverlifeassociated names alignments report in gzipped html, csv, and tsv)
gbifassociated names alignments report in gzipped html, csv, and tsv)
itisassociated names alignments report in gzipped html, csv, and tsv)
wfoassociated names alignments report in gzipped html, csv, and tsv)
mddassociated names alignments report in gzipped html, csv, and tsv)
tptassociated names alignments report in gzipped html, csv, and tsv)
pbdbassociated names alignments report in gzipped html, csv, and tsv)
wormsassociated names alignments report in gzipped html, csv, and tsv)
\n

Additional Reviews

\n

Elton, Nomer, and other tools may have difficulties interpreting\nexisting species interaction datasets. Or, they may misbehave, or\notherwise show unexpected behavior. As part of the review process,\ndetailed review notes are kept that document possibly misbehaving, or\nconfused, review bots. An sample of review notes associated with this\nreview can be found below.

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
First few lines in the review notes.
reviewDatereviewCommentTypereviewComment
2025-08-20T20:47:57Znotefound unresolved reference\n[008f0ec3-68fd-4051-b53e-13b594a29545]
2025-08-20T20:47:57Znotefound unresolved reference\n[00b8b626-b09e-4bc8-a2d2-7235f7382605]
2025-08-20T20:47:57Znotefound unresolved reference\n[010ee0ec-986c-4b11-a2a6-03a1b048f205]
2025-08-20T20:47:57Znotefound unresolved reference\n[0295a4c0-1227-4520-b786-34793eec7e1b]
\n

In addition, you can find the most frequently occurring notes in the\ntable below.

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Most frequently occurring review notes, if any.
reviewCommentcount
found unresolved reference\n[008f0ec3-68fd-4051-b53e-13b594a29545]1
found unresolved reference\n[00b8b626-b09e-4bc8-a2d2-7235f7382605]1
found unresolved reference\n[010ee0ec-986c-4b11-a2a6-03a1b048f205]1
found unresolved reference\n[0295a4c0-1227-4520-b786-34793eec7e1b]1
\n

For additional information on review notes, please have a look at the\nfirst 500 Review Notes in html format\nor the download full gzipped csv or tsv archives.

\n

GloBI Review Badge

\n

As part of the review, a review badge is generated. This review badge\ncan be included in webpages to indicate the review status of the dataset\nunder review.

\n
\n\"Picture\n
Picture of a GloBI Review Badge 3
\n
\n

Note that if the badge is green, no review notes were generated. If\nthe badge is yellow, the review bots may need some help with\ninterpreting the species interaction data.

\n

GloBI Index Badge

\n

If the dataset under review has been registered with\nGloBI, and has been succesfully indexed by GloBI, the GloBI Index\nStatus Badge will turn green. This means that the dataset under review\nwas indexed by GloBI and is available through GloBI services and derived\ndata products.

\n
\n\n
Picture of a GloBI Index Badge 4
\n
\n

If you’d like to keep track of reviews or index status of the dataset\nunder review, please visit GloBI’s dataset index 5 for\nbadge examples.

\n

Discussion

\n

This review and archive provides a means of creating citable versions\nof datasets that change frequently. This may be useful for dataset\nmanagers, including natural history collection data managers, as a\nbackup archive of a shared Darwin Core archive. It also serves as a\nmeans of creating a trackable citation for the dataset in an automated\nway, while also including some information about the contents of the\ndataset.

\n

This review aims to provide a perspective on the dataset to aid in\nunderstanding of species interaction claims discovered. However, it is\nimportant to note that this review does not assess the quality\nof the dataset. Instead, it serves as an indication of the open-ness6 and FAIRness (Wilkinson et\nal. 2016; Trekels et al. 2023) of the dataset: to perform this\nreview, the data was likely openly available, Findable,\nAccessible, Interoperable and\nReusable. The current Open-FAIR assessment is\nqualitative, and a more quantitative approach can be implemented with\nspecified measurement units.

\n

This report also showcases the reuse of machine-actionable\n(meta)data, something highly recommended by the FAIR Data Principles\n(Wilkinson et al.\n2016). Making (meta)data machine-actionable enables more precise\nprocesing by computers, enabling even naive review bots like Nomer and\nElton to interpret the data effectively. This capability is crucial for\nnot just automating the generation of reports, but also for facilitating\nseamless data exchanges, promoting interoperability.

\n

Acknowledgements

\n

We thank the many humans that created us and those who created and\nmaintained the data, software and other intellectual resources that were\nused for producing this review. In addition, we are grateful for the\nnatural resources providing the basis for these human and bot\nactivities. Also, thanks to https://github.com/zygoballus for helping\nimprove the layout of the review tables.

\n

Author contributions

\n

Nomer was responsible for name alignments. Elton carried out dataset\nextraction, and generated the review notes. Preston tracked, versioned,\nand packaged, the dataset under review.

\n

References

\n
\n
\nElliott, Michael, Jorrit Poelen, Icaro Alzuru, Emilio Berti, and\npartha04patel. 2025. “Bio-Guoda/Preston: 0.10.5.” Zenodo.\nhttps://doi.org/10.5281/zenodo.14662206.\n
\n
\nICZN. 1999. “International Code of Zoological\nNomenclature.” The International Trust for Zoological\nNomenclature, London, UK. https://www.iczn.org/the-code/the-code-online/.\n
\n
\nKuhn, Tobias, and Michel Dumontier. 2014. “Trusty URIs:\nVerifiable, Immutable, and Permanent Digital Artifacts for Linked\nData.” In The Semantic Web: Trends and Challenges,\nedited by Valentina Presutti, Claudia d’Amato, Fabien Gandon, Mathieu\nd’Aquin, Steffen Staab, and Anna Tordai, 395–410. Cham: Springer\nInternational Publishing.\n
\n
\nKuhn, Tobias, Jorrit Poelen, and Katrin Leinweber. 2025.\n“Globalbioticinteractions/Elton: 0.15.1.” Zenodo. https://doi.org/10.5281/zenodo.14927734.\n
\n
\nPoelen, Jorrit H. (ed.). 2024. “Nomer Corpus of Taxonomic\nResources Hash://Sha256/\nB60c0d25a16ae77b24305782017b1a270b79b5d1746f832650 F2027ba536e276\nHash://Md5/17f1363a277ee0e4ecaf1b91c665e47e.” Zenodo. https://doi.org/10.5281/zenodo.12695629.\n
\n
\nPoelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014.\n“Global Biotic Interactions: An Open Infrastructure to Share and\nAnalyze Species-Interaction Datasets.” Ecological\nInformatics 24 (November): 148–59. https://doi.org/10.1016/j.ecoinf.2014.08.005.\n
\n
\nPoelen, Jorrit, Katja Seltmann, and Daniel Mietchen. 2024.\n“Globalbioticinteractions/Globinizer: 0.4.0.” Zenodo. https://doi.org/10.5281/zenodo.10647565.\n
\n
\nSalim, José Augusto, and Jorrit Poelen. 2025.\n“Globalbioticinteractions/Nomer: 0.5.15.” Zenodo. https://doi.org/10.5281/zenodo.14893840.\n
\n
\nTrekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff\nOllerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina,\nQuentin Groom, and Mariano Devoto. 2023. “WorldFAIR Project (D10.1) Agriculture-related pollinator\ndata standards use cases report.” Zenodo. https://doi.org/10.5281/zenodo.8176978.\n
\n
\nWilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg,\nGabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al.\n2016. “The FAIR Guiding Principles for Scientific\nData Management and Stewardship.” Scientific Data 3 (1).\nhttps://doi.org/10.1038/sdata.2016.18.\n
\n
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