Preview

ListerLab-TEPID-3b39dd2
- .gitattributes
  
  31 Bytes
- .gitignore
  
  92 Bytes
- Annotation
  - Arabidopsis
    - TAIR9_TE.bed.gz
      
      392.3 kB
  - Brachypodium
    - Brachy_TE_v2.2.bed.gz
      
      1.0 MB
  - Human
    - hg19.bed.gz
      
      42.6 MB
- LICENSE
  
  32.4 kB
- README.md
  
  6.9 kB
- Scripts
  - flip_deletions.py
    
    1.4 kB
  - genotype.py
    
    2.5 kB
  - merge_deletions.py
    
    2.3 kB
  - merge_insertions.py
    
    7.0 kB
  - tepid-discover
    
    2.2 kB
  - tepid-map
    
    2.2 kB
  - tepid-map-se
    
    2.3 kB
  - tepid-refine
    
    1.6 kB
- requirements.txt
  
  57 Bytes
- setup.cfg
  
  154 Bytes
- setup.py
  
  1.4 kB
- tepid
  - __init__.py
    
    93 Bytes
  - _version.py
    
    15.8 kB
  - tepid.py
    
    47.6 kB
- tests
  - __init__.py
    
    0 Bytes
  - conc.bam
    
    300.8 kB
  - conc.bam.bai
    
    37.0 kB
  - deletion_reads_test.txt
    
    59 Bytes
  - deletions_test.bed
    
    36 Bytes
  - insertion_reads_test.txt
    
    212 Bytes
  - insertions_test.bed
    
    57 Bytes
  - split.bam
    
    11.9 kB
  - tepid_discover_log_test.txt
    
    262 Bytes
  - tepid_test.py
    
    1.1 kB
- versioneer.py
  
  62.5 kB