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Published August 1, 2025 | Version 2025_07
Software Open

imgag/ngs-bits: 2025_07

Creators

  • 1. Institute of Medical Genetics and Applied Genomics
  • 2. Institut für Medizinische Genetik und Angewandte Genomik
  • 3. @GC-HBOC @imgag
  • 4. University of Tübingen
  • 5. @MHH-Humangenetik
  • 6. Avera Cancer Institute

Description

Changes:

  • FastqTrim: added parameter -max_len.
  • NGSDAddVariantsGermline: now always overrides imported variants if there is no report config of the respective variant type.
  • NGSDExtractRNACohort: added parameter -only_samples.
  • TrioMaternalContamination: Code refactoring and speed-up.
  • VariantFilterAnnotations: Made input and output files optional (for use in pipes).
  • VcfCheck: added parameter -duplicates.
  • general bug fixes and more Qt6 adaptations
  • updated htslib for Linux from 1.16 to 1.22.1
  • NGSD:
    • analysis_job table: added use_dragen flag
    • expression_exon table: changed type of id field to BIGINT

Full Changelog at: https://github.com/imgag/ngs-bits/compare/2025_05...2025_07

Note: Please do not use the auto-generated 'Source code' packages - they will not work!

Files

imgag/ngs-bits-2025_07.zip

Files (199.4 MB)

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md5:007e5392e953a859da948c1783693a55
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Additional details

Related works

Is supplement to
Software: https://github.com/imgag/ngs-bits/tree/2025_07 (URL)

Software

Repository URL
https://github.com/imgag/ngs-bits