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Drop-seq WDL

\n

WDL for analyzing Drop-seq data

\n

Drop-seq questions may be directed to dropseq@gmail.com.
\nYou may also use this address to be added to the Drop-seq Google group.

\n

See the Drop-seq GitHub repository for more information on the tools.

\n

Overview

\n\n

Workflows

\n

| Workflow | Summary |\n|---------------------------|-------------------------------------------------|\n| optimus_post_processing | Converts Optimus outputs to Drop-seq inputs |\n| dropseq_cbrb | Estimates parameters then invokes CBRB |\n| cell_selection | Sub-selects barcodes that captured nuclei |\n| standard_analysis | Assigns nuclei to donors and detects doublets |\n| cell_classification | Classifies cells based on their gene expression |\n| tensorqtl | cis-QTL mapping using tensorQTL |

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