CHROM,POS,TYPE,REF,ALT,EVIDENCE,FTYPE,STRAND,NT_POS,AA_POS,EFFECT,LOCUS_TAG,GENE,PRODUCT
LS999205,378359,del,TTG,T,T:20 TTG:0
LS999205,496795,del,TA,T,T:19 TA:0
LS999205,901430,del,GTGGAACCT,G,G:19 GTGGAACCT:0,CDS,+,636/1446,212/481,frameshift_variant c.636_643delGAACCTTG p.Trp212fs,PPRCHA0_0776,,"inorganic anion transporter, SulP family"
LS999205,1217739,del,TA,T,T:20 TA:0
LS999205,1336912,del,TA,T,T:20 TA:0
LS999205,1383216,del,TG,T,T:20 TG:0,CDS,+,67/474,23/157,frameshift_variant c.67delG p.Val23fs,PPRCHA0_1209,ispF,"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"
LS999205,1388500,del,AT,A,A:19 AT:0
LS999205,1391266,ins,G,GT,GT:20 G:0,CDS,-,579/2580,193/859,frameshift_variant c.579dupA p.Arg194fs,PPRCHA0_1216,mutS,DNA mismatch repair protein MutS
LS999205,1449457,ins,G,GT,GT:19 G:0,CDS,+,15/1047,5/348,frameshift_variant c.14dupT p.Ala6fs,PPRCHA0_1280,,hypothetical protein
LS999205,1496986,del,GT,G,G:20 GT:0,CDS,+,981/1383,327/460,frameshift_variant c.981delT p.Phe327fs,PPRCHA0_1327,,"transporter, major facilitator family"
LS999205,1760560,del,AT,A,A:19 AT:0,CDS,-,13/564,5/187,frameshift_variant c.13delA p.Ile5fs,PPRCHA0_1565,ppiA,peptidyl-prolyl cis-trans isomerase A
LS999205,1818593,ins,G,GT,GT:19 G:0
LS999205,2194554,snp,G,T,T:20 G:0,CDS,-,685/978,229/325,missense_variant c.685C>A p.Pro229Thr,PPRCHA0_1964,ykcC,putative glycosyltransferase YkcC
LS999205,2275456,del,CAT,C,C:18 CAT:0
LS999205,2310434,ins,G,GT,GT:18 G:0
LS999205,2339769,del,TG,T,T:20 TG:0,CDS,+,2479/2577,827/858,frameshift_variant c.2479delG p.Asp827fs,PPRCHA0_2099,,hypothetical protein
LS999205,2804712,ins,A,AG,AG:20 A:0,CDS,-,849/1515,283/504,frameshift_variant c.849dupC p.Phe284fs,PPRCHA0_2533,,"drug resistance transporter, EmrB/QacA family"
LS999205,2826522,del,GC,G,G:19 GC:0,CDS,-,68/1140,23/379,frameshift_variant c.68delG p.Gly23fs,PPRCHA0_2557,,putative cytochrome P450 oxidoreductase
LS999205,2842067,del,CT,C,C:20 CT:0,CDS,+,363/702,121/233,frameshift_variant c.363delT p.Gln122fs,PPRCHA0_2570,,hypothetical protein
LS999205,2843648,del,CA,C,C:19 CA:0
LS999205,3726100,del,CA,C,C:19 CA:0,CDS,+,687/768,229/255,frameshift_variant c.687delA p.Ala230fs,PPRCHA0_3303,gloB,hydroxyacylglutathione hydrolase
LS999205,3866379,del,TA,T,T:20 TA:0,CDS,-,41/816,14/271,frameshift_variant c.41delT p.Leu14fs,PPRCHA0_3435,,hypothetical protein
LS999205,3987303,ins,C,CA,CA:20 C:0
LS999205,4093283,ins,C,CCCT,CCCT:15 C:0
LS999205,4137109,del,TA,T,T:20 TA:0
LS999205,4140689,snp,C,T,T:20 C:0,CDS,-,310/1176,104/391,missense_variant c.310G>A p.Ala104Thr,PPRCHA0_3662,,thiolase domain protein
LS999205,4263882,ins,G,GT,GT:19 G:0
LS999205,4301100,ins,G,GCC,GCC:18 G:0
LS999205,4580700,del,GT,G,G:19 GT:0
LS999205,4834007,del,TA,T,T:20 TA:0
LS999205,4917049,del,AT,A,A:18 AT:0
LS999205,4957070,del,AT,A,A:19 AT:0
LS999205,5316123,ins,G,GT,GT:19 G:0,CDS,-,29/414,10/137,frameshift_variant&stop_gained c.29dupA p.Tyr10fs,PPRCHA0_4689,,histidine kinase domain protein
LS999205,5363042,ins,G,GT,GT:19 G:0
LS999205,5677184,del,CCG,C,C:20 CCG:0,CDS,+,192/1332,64/443,frameshift_variant c.192_193delGC p.Pro65fs,PPRCHA0_5035,,sensor histidine kinase
LS999205,5834802,snp,T,C,C:10 T:0
LS999205,6181718,snp,C,T,T:11 C:0