CHROM,POS,TYPE,REF,ALT,EVIDENCE,FTYPE,STRAND,NT_POS,AA_POS,EFFECT,LOCUS_TAG,GENE,PRODUCT
LS999205,543031,del,CTGT,C,C:18 CTGT:0,CDS,-,1580/2343,526/780,disruptive_inframe_deletion c.1578_1580delACA p.Gln527del,PPRCHA0_0474,,putative membrane protein
LS999205,1092482,del,CT,C,C:19 CT:0
LS999205,1336912,del,TA,T,T:19 TA:0
LS999205,1399207,del,GGTGA,G,G:18 GGTGA:0,CDS,+,220/408,74/135,frameshift_variant c.220_223delGTGA p.Val74fs,PPRCHA0_1227,,hypothetical protein
LS999205,1741067,del,GC,G,G:19 GC:0,CDS,+,559/1581,187/526,frameshift_variant c.559delC p.His187fs,PPRCHA0_1551,aldH_2,NADP-dependent fatty aldehyde dehydrogenase
LS999205,1753198,ins,G,GT,GT:20 G:0
LS999205,1867193,del,TC,T,T:20 TC:0
LS999205,1998236,del,GC,G,G:18 GC:0,CDS,+,68/2232,23/743,frameshift_variant c.68delC p.Pro23fs,PPRCHA0_1791,,DNA internalization competence protein ComEC/Rec2-like protein
LS999205,2194554,snp,G,T,T:20 G:0,CDS,-,685/978,229/325,missense_variant c.685C>A p.Pro229Thr,PPRCHA0_1964,ykcC,putative glycosyltransferase YkcC
LS999205,2262454,del,TA,T,T:20 TA:0,CDS,+,318/321,106/106,frameshift_variant c.318delA p.Lys106fs,PPRCHA0_2028,,regulatory protein
LS999205,2304284,del,CG,C,C:20 CG:0,CDS,+,691/861,231/286,frameshift_variant c.691delG p.Ala231fs,PPRCHA0_2071,,"transcriptional regulator, LysR family"
LS999205,2361503,del,AT,A,A:18 AT:0
LS999205,2372878,del,TA,T,T:19 TA:0
LS999205,2485756,del,TA,T,T:19 TA:0
LS999205,3055238,del,TC,T,T:19 TC:0,CDS,-,1005/1863,335/620,frameshift_variant c.1005delG p.Met336fs,PPRCHA0_2769,,outer membrane autotransporter barrel domain protein
LS999205,3062416,del,AG,A,A:19 AG:0
LS999205,3174319,ins,G,GT,GT:18 G:0,CDS,+,585/597,195/198,frameshift_variant c.584dupT p.Leu195fs,PPRCHA0_2853,,hypothetical protein
LS999205,3866379,del,TA,T,T:19 TA:0,CDS,-,41/816,14/271,frameshift_variant c.41delT p.Leu14fs,PPRCHA0_3435,,hypothetical protein
LS999205,4140689,snp,C,T,T:20 C:0,CDS,-,310/1176,104/391,missense_variant c.310G>A p.Ala104Thr,PPRCHA0_3662,,thiolase domain protein
LS999205,4181137,del,CCA,C,C:19 CCA:0,CDS,+,106/276,36/91,frameshift_variant c.106_107delAC p.Thr36fs,PPRCHA0_3692,,putative secreted protein
LS999205,4301100,ins,G,GCCC,GCCC:18 G:0
LS999205,4331337,del,CA,C,C:19 CA:0,CDS,+,103/195,35/64,frameshift_variant c.103delA p.Ile35fs,PPRCHA0_3830,,hypothetical protein
LS999205,4385160,del,CT,C,C:18 CT:0
LS999205,4954971,del,CA,C,C:20 CA:0,CDS,-,414/1296,138/431,frameshift_variant c.414delT p.Phe138fs,PPRCHA0_4354,,hypothetical protein
LS999205,4983238,del,CA,C,C:20 CA:0
LS999205,5189408,del,AT,A,A:18 AT:0
LS999205,5433108,del,GT,G,G:20 GT:0
LS999205,5762776,ins,G,GT,GT:18 G:0
LS999205,5825570,del,TC,T,T:19 TC:0,CDS,-,2175/2304,725/767,frameshift_variant c.2175delG p.Ile726fs,PPRCHA0_5175,,PqiB family protein
LS999205,6181718,snp,C,T,T:10 C:0
LS999205,6542382,del,TCTG,T,T:18 TCTG:0,CDS,-,864/966,288/321,conservative_inframe_deletion c.862_864delCAG p.Gln288del,PPRCHA0_5841,ssuA,"aliphatic sulfonates ABC transporter, periplasmic sulfonate-binding protein"
LS999205,6860980,del,GT,G,G:18 GT:0