CHROM,POS,TYPE,REF,ALT,EVIDENCE,FTYPE,STRAND,NT_POS,AA_POS,EFFECT,LOCUS_TAG,GENE,PRODUCT
LS999205,169392,del,TG,T,T:20 TG:0,CDS,+,802/1482,268/493,frameshift_variant c.802delG p.Glu268fs,PPRCHA0_0145,,"efflux transporter, outer membrane factor lipoprotein, NodT family"
LS999205,905778,del,TC,T,T:18 TC:0,CDS,+,1138/1467,380/488,frameshift_variant c.1138delC p.Arg380fs,PPRCHA0_0779,,N-acyl-D-aspartate deacylase
LS999205,1089977,snp,G,C,C:20 G:0,CDS,+,913/1104,305/367,missense_variant c.913G>C p.Val305Leu,PPRCHA0_0949,,"oxidoreductase, FAD/FMN dependent"
LS999205,1221723,del,GC,G,G:19 GC:0
LS999205,1620221,del,CG,C,C:19 CG:0
LS999205,1937671,del,TG,T,T:19 TG:0
LS999205,2189139,del,TG,T,T:19 TG:0
LS999205,2661991,del,CG,C,C:19 CG:0,CDS,+,214/1470,72/489,frameshift_variant c.214delG p.Val72fs,PPRCHA0_2385,,hypothetical protein
LS999205,2845432,del,TC,T,T:19 TC:0,CDS,-,1083/1305,361/434,frameshift_variant c.1083delG p.Ile362fs,PPRCHA0_2573,bkdB,"2-oxoisovalerate dehydrogenase E2 component, dihydrolipoamide acyltransferase"
LS999205,3546111,del,GC,G,G:19 GC:0,CDS,-,160/1128,54/375,frameshift_variant c.160delG p.Ala54fs,PPRCHA0_3160,,"ATPase, AFG1 family"
LS999205,3821536,del,AC,A,A:19 AC:0,CDS,-,451/1143,151/380,frameshift_variant c.451delG p.Val151fs,PPRCHA0_3384,glxK,glycerate kinase
LS999205,3880757,del,CT,C,C:19 CT:0,CDS,-,9/138,3/45,frameshift_variant c.9delA p.Val4fs,PPRCHA0_3455,,hypothetical protein
LS999205,3899502,del,GC,G,G:20 GC:0
LS999205,4023944,del,AG,A,A:19 AG:0,CDS,-,37/810,13/269,frameshift_variant c.37delC p.Leu13fs,PPRCHA0_3568,,"amino acid ABC transporter, ATP-binding protein"
LS999205,4093283,ins,C,CCCT,CCCT:15 C:0
LS999205,4170437,del,CG,C,C:20 CG:0
LS999205,4301100,ins,G,GCC,GCC:18 G:0
LS999205,4340346,del,GC,G,G:19 GC:0
LS999205,4409041,del,GC,G,G:19 GC:0,CDS,-,368/753,123/250,frameshift_variant c.368delG p.Gly123fs,PPRCHA0_3911,,hypothetical protein
LS999205,4956919,del,GC,G,G:19 GC:0
LS999205,5030370,del,CG,C,C:19 CG:0,CDS,+,54/786,18/261,frameshift_variant c.54delG p.Gln19fs,PPRCHA0_4421,,hypothetical protein
LS999205,5364336,ins,A,AC,AC:19 A:0,CDS,+,89/375,30/124,frameshift_variant c.88dupC p.Leu30fs,PPRCHA0_4733,mvaT,transcriptional regulator MvaT
LS999205,5365591,ins,A,AC,AC:20 A:0,CDS,-,565/1428,189/475,frameshift_variant c.565dupG p.Val189fs,PPRCHA0_4734,sbcB,exodeoxyribonuclease I
LS999205,5376849,ins,G,GC,GC:19 G:0,CDS,-,633/939,211/312,frameshift_variant c.633dupG p.Arg212fs,PPRCHA0_4745,,"2Fe-2S iron-sulfur cluster binding domain/oxidoreductase, NAD-and FAD-binding domains protein"
LS999205,5376890,ins,A,AT,AT:20 A:0,CDS,-,592/939,198/312,frameshift_variant c.592_593insA p.Leu198fs,PPRCHA0_4745,,"2Fe-2S iron-sulfur cluster binding domain/oxidoreductase, NAD-and FAD-binding domains protein"
LS999205,5834802,snp,T,C,C:10 T:0
LS999205,5959697,del,TC,T,T:19 TC:0
LS999205,5978842,del,TC,T,T:19 TC:0
LS999205,6088884,del,GC,G,G:19 GC:0,CDS,+,69/1893,23/630,frameshift_variant c.69delC p.Asp24fs,PPRCHA0_5417,btuB,putative TonB-dependent outermembrane B12 receptor
LS999205,6123322,del,AG,A,A:19 AG:0,CDS,+,863/885,288/294,frameshift_variant c.863delG p.Gly288fs,PPRCHA0_5449,,"hydrolase, TatD family"
LS999205,6181718,snp,C,T,T:11 C:0
LS999205,6254238,del,GC,G,G:19 GC:0,CDS,-,48/2376,16/791,frameshift_variant c.48delG p.Leu17fs,PPRCHA0_5567,quiA,quinate/shikimate dehydrogenase
LS999205,6277140,del,AG,A,A:19 AG:0,CDS,-,21/1806,7/601,frameshift_variant c.21delC p.Leu8fs,PPRCHA0_5586,,acyl-CoA dehydrogenase family protein
LS999205,6671173,snp,A,C,C:20 A:0,CDS,+,1282/1398,428/465,missense_variant c.1282A>C p.Thr428Pro,PPRCHA0_5962,algC,phosphomannomutase/phosphoglucomutase