FastQCFastQC Report
Mon 28 May 2018
trimmomatic_output_2P.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmomatic_output_2P.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298999
Sequences flagged as poor quality0
Sequence length2-301
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTCGAG700.0074729181039.9496295
TAACTAG150.009700116365.74072290-294
TATATGT1452.2516775E-480.575066280-284
TAGGTTC1400.007636450765.10118275-279
ATTACCC3200.001061013461.6116290-294
GCACGGA2900.005904738354.641136285-289
TATATCT1351.4795554E-454.411625270-274
TGTTAGA1155.9300153E-552.193447265-269
GTTCTGG856.829344E-445.2584461
TGCACTC950.001124750640.896165
TATGAGT1050.001867362636.887714
CCTATAC1856.166938E-736.5574233
ATAATAC1609.575209E-636.2310183
TATAGAG1100.002311166435.3194125
ATTATAC1100.00237193535.1331063
TACCCTG3350.001392276134.875774280-284
GTACTGT5801.4585461E-533.992603290-294
GATATAT1751.8252502E-532.9740141
AATGATG5250.003328580632.74936255-259
CTATGCT1502.7474551E-432.276754