FastQCFastQC Report
Mon 28 May 2018
Z5826_S46_L001_R2_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameZ5826_S46_L001_R2_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311892
Sequences flagged as poor quality0
Sequence length35-301
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGTCC551.1559894E-5103.175134
CTAGGTC650.002897590465.4765243
ATAGGAC1052.8468113E-454.0441173
TAGACCC1052.8468113E-454.0441174
AACTCTC1502.8976043E-547.28867
AGGTCCG1205.5017666E-447.2885975
TTATACT1655.0871087E-542.989634
ATACTAT1359.827642E-442.034316
GTATTAG1705.9302583E-541.8864141
GTGTAGG2104.317939E-640.689661
CTCTTAC1550.001901649436.751951
CTACACC5650.035.1525884
TCCTAAT1650.002584397834.524561
CCTAATA1650.002633737434.391712
GGTCTAT1700.002991733.5091321
TTGGGCC1700.003048781533.3801884
TACAAGG1700.003048781533.3801882
ACTGTAC1750.00351399532.4264683
CCTCCCA3250.004387232530.981665295
TAGACCT1850.004612414630.6736855