Basic Statistics
Measure | Value |
---|---|
Filename | trimmomatic_output_2P.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 298999 |
Sequences flagged as poor quality | 0 |
Sequence length | 2-301 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTCGAG | 70 | 0.007472918 | 1039.9496 | 295 |
TAACTAG | 15 | 0.009700116 | 365.74072 | 290-294 |
TATATGT | 145 | 2.2516775E-4 | 80.575066 | 280-284 |
TAGGTTC | 140 | 0.0076364507 | 65.10118 | 275-279 |
ATTACCC | 320 | 0.0010610134 | 61.6116 | 290-294 |
GCACGGA | 290 | 0.0059047383 | 54.641136 | 285-289 |
TATATCT | 135 | 1.4795554E-4 | 54.411625 | 270-274 |
TGTTAGA | 115 | 5.9300153E-5 | 52.193447 | 265-269 |
GTTCTGG | 85 | 6.829344E-4 | 45.258446 | 1 |
TGCACTC | 95 | 0.0011247506 | 40.89616 | 5 |
TATGAGT | 105 | 0.0018673626 | 36.88771 | 4 |
CCTATAC | 185 | 6.166938E-7 | 36.557423 | 3 |
ATAATAC | 160 | 9.575209E-6 | 36.231018 | 3 |
TATAGAG | 110 | 0.0023111664 | 35.319412 | 5 |
ATTATAC | 110 | 0.002371935 | 35.133106 | 3 |
TACCCTG | 335 | 0.0013922761 | 34.875774 | 280-284 |
GTACTGT | 580 | 1.4585461E-5 | 33.992603 | 290-294 |
GATATAT | 175 | 1.8252502E-5 | 32.974014 | 1 |
AATGATG | 525 | 0.0033285806 | 32.74936 | 255-259 |
CTATGCT | 150 | 2.7474551E-4 | 32.27675 | 4 |