FastQCFastQC Report
Mon 28 May 2018
trimmomatic_output_1P.fastq

Summary

[OK]Basic Statistics

MeasureValue
Filenametrimmomatic_output_1P.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298999
Sequences flagged as poor quality0
Sequence length2-301
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCCTT505.9802184E-4330.92526295
TAGGACT302.5153172E-4121.134374
CTAGGAC407.897402E-490.850783
TACTGTG655.794152E-574.556717
TATATAC1306.4701453E-965.2262043
CGTTAGG650.00542397355.889472
TAGGACA1451.0274725E-650.124574
TGTAGGA1501.3009812E-648.437542
AGGACTG1107.797916E-444.0562365
TTATATA1652.5079935E-644.034132
GTGTAGA1652.5108839E-644.0267641
GTGTATG2254.879312E-737.667341
TTAGACG1300.001774735337.2721184
TACTACA1300.001774735337.2721184
GTATTAA2305.796046E-736.848481
TATATAG1350.002134225335.8976755
ACTGCGA1701.5349947E-435.6396878
CCCCTAT1701.5425676E-435.6098821
TAGACAA2051.109712E-535.4598965
CCTTACA1400.002557364334.5982442