Basic Statistics
Measure | Value |
---|---|
Filename | Z5826_S46_L001_R2_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 311892 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-301 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGTCC | 55 | 1.1559894E-5 | 103.17513 | 4 |
CTAGGTC | 65 | 0.0028975904 | 65.476524 | 3 |
ATAGGAC | 105 | 2.8468113E-4 | 54.044117 | 3 |
TAGACCC | 105 | 2.8468113E-4 | 54.044117 | 4 |
AACTCTC | 150 | 2.8976043E-5 | 47.2886 | 7 |
AGGTCCG | 120 | 5.5017666E-4 | 47.288597 | 5 |
TTATACT | 165 | 5.0871087E-5 | 42.98963 | 4 |
ATACTAT | 135 | 9.827642E-4 | 42.03431 | 6 |
GTATTAG | 170 | 5.9302583E-5 | 41.886414 | 1 |
GTGTAGG | 210 | 4.317939E-6 | 40.68966 | 1 |
CTCTTAC | 155 | 0.0019016494 | 36.75195 | 1 |
CTACACC | 565 | 0.0 | 35.152588 | 4 |
TCCTAAT | 165 | 0.0025843978 | 34.52456 | 1 |
CCTAATA | 165 | 0.0026337374 | 34.39171 | 2 |
GGTCTAT | 170 | 0.0029917 | 33.509132 | 1 |
TTGGGCC | 170 | 0.0030487815 | 33.380188 | 4 |
TACAAGG | 170 | 0.0030487815 | 33.380188 | 2 |
ACTGTAC | 175 | 0.003513995 | 32.426468 | 3 |
CCTCCCA | 325 | 0.0043872325 | 30.981665 | 295 |
TAGACCT | 185 | 0.0046124146 | 30.673685 | 5 |