Basic Statistics
Measure | Value |
---|---|
Filename | trimmomatic_output_1P.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 298999 |
Sequences flagged as poor quality | 0 |
Sequence length | 2-301 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTCCTT | 50 | 5.9802184E-4 | 330.92526 | 295 |
TAGGACT | 30 | 2.5153172E-4 | 121.13437 | 4 |
CTAGGAC | 40 | 7.897402E-4 | 90.85078 | 3 |
TACTGTG | 65 | 5.794152E-5 | 74.55671 | 7 |
TATATAC | 130 | 6.4701453E-9 | 65.226204 | 3 |
CGTTAGG | 65 | 0.005423973 | 55.88947 | 2 |
TAGGACA | 145 | 1.0274725E-6 | 50.12457 | 4 |
TGTAGGA | 150 | 1.3009812E-6 | 48.43754 | 2 |
AGGACTG | 110 | 7.797916E-4 | 44.056236 | 5 |
TTATATA | 165 | 2.5079935E-6 | 44.03413 | 2 |
GTGTAGA | 165 | 2.5108839E-6 | 44.026764 | 1 |
GTGTATG | 225 | 4.879312E-7 | 37.66734 | 1 |
TTAGACG | 130 | 0.0017747353 | 37.272118 | 4 |
TACTACA | 130 | 0.0017747353 | 37.272118 | 4 |
GTATTAA | 230 | 5.796046E-7 | 36.84848 | 1 |
TATATAG | 135 | 0.0021342253 | 35.897675 | 5 |
ACTGCGA | 170 | 1.5349947E-4 | 35.639687 | 8 |
CCCCTAT | 170 | 1.5425676E-4 | 35.609882 | 1 |
TAGACAA | 205 | 1.109712E-5 | 35.459896 | 5 |
CCTTACA | 140 | 0.0025573643 | 34.598244 | 2 |