Basic Statistics
Measure | Value |
---|---|
Filename | Z5826_S46_L001_R1_001.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 311892 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-301 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGTAC | 60 | 1.7984084E-5 | 94.390305 | 3 |
GGAGTGT | 80 | 0.006644712 | 53.094547 | 6 |
TACAGTG | 80 | 0.006644712 | 53.094547 | 7 |
TAGTACA | 115 | 4.50396E-4 | 49.247116 | 4 |
CGGGGGG | 270 | 3.3996228E-5 | 46.013283 | 295 |
CCTAACC | 125 | 6.793701E-4 | 45.307346 | 2 |
GTGTAAC | 165 | 5.1468287E-5 | 42.904686 | 1 |
ACAGTGC | 365 | 1.8189894E-12 | 42.66959 | 8 |
TGTACCC | 135 | 9.923768E-4 | 41.95125 | 5 |
GACAGTG | 280 | 1.7389539E-8 | 40.452988 | 7 |
ACATACT | 140 | 0.0011867901 | 40.452988 | 4 |
TATGTAC | 160 | 0.0022868544 | 35.396362 | 3 |
GGACAGT | 445 | 2.3646862E-11 | 34.99865 | 6 |
AATAGTA | 375 | 5.988113E-9 | 33.98051 | 6 |
GTAATAG | 175 | 0.0035482026 | 32.362392 | 3 |
ATCTAGT | 180 | 0.0040729353 | 31.463434 | 1 |
ATATACG | 270 | 2.5156653E-5 | 31.463434 | 1 |
CTATACT | 185 | 0.0046572606 | 30.613071 | 4 |
CCTAAAC | 185 | 0.0046572606 | 30.613071 | 2 |
TACTGAC | 185 | 0.0046572606 | 30.613071 | 7 |