FastQCFastQC Report
Mon 28 May 2018
Z5826_S46_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameZ5826_S46_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311892
Sequences flagged as poor quality0
Sequence length35-301
%GC52

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGTAC601.7984084E-594.3903053
GGAGTGT800.00664471253.0945476
TACAGTG800.00664471253.0945477
TAGTACA1154.50396E-449.2471164
CGGGGGG2703.3996228E-546.013283295
CCTAACC1256.793701E-445.3073462
GTGTAAC1655.1468287E-542.9046861
ACAGTGC3651.8189894E-1242.669598
TGTACCC1359.923768E-441.951255
GACAGTG2801.7389539E-840.4529887
ACATACT1400.001186790140.4529884
TATGTAC1600.002286854435.3963623
GGACAGT4452.3646862E-1134.998656
AATAGTA3755.988113E-933.980516
GTAATAG1750.003548202632.3623923
ATCTAGT1800.004072935331.4634341
ATATACG2702.5156653E-531.4634341
CTATACT1850.004657260630.6130714
CCTAAAC1850.004657260630.6130712
TACTGAC1850.004657260630.6130717