Published June 27, 2025
| Version v1
Workflow
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Exploring the relationship between GBA1 host genotype and gut microbiome in the GBA1L444P/WT mouse model: Implications for Parkinson disease pathogenesis. Meteor Nextflow worflow
Authors/Creators
-
1.
Institut National de la Recherche Agronomique
- 2. INRA Centre de Jouy-en-Josas
- 3. Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement Centre Île-de-France Jouy-en-Josas Antony
Description
This repository provides a Nextflow workflow to run Meteor2 on short-read, single-end metagenomic sequencing data. Among other outputs, it generates gene and species abundance tables.
⚠️ Note: This workflow uses a custom Meteor2 Conda package to ensure full compatibility with Nextflow.
Files
README.md
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Additional details
Funding
- Agence Nationale de la Recherche
- MGP - MetaGenoPolis ANR-11-DPBS-0001
- Aligning Science Across Parkinson's
- The genome-microbiome axis in the cause of Parkinson disease: Mechanistic insights and therapeutic implications from experimental models and a genetically stratified patient population ASAP-000420