assets:
  basemap:
    sge:
      dark: sge-mono-dark.pmtiles
      default: dark
      light: sge-mono-light.pmtiles
    DAPI-focus:
      dark: ome-focus-dapi-l0-t0-q95.pmtiles
      default: dark
      light: ome-focus-dapi-l0-t0-q95.pmtiles
    HnE:
      dark: histology-hne.pmtiles
      default: light
      light: histology-hne.pmtiles
    IFpage1:
      dark: if_page1_ref.pmtiles
      default: dark
      light: if_page1_ref.pmtiles
    IFpage2:
      dark: if_page2_ref.pmtiles
      default: dark
      light: if_page2_ref.pmtiles
    IFpage3:
      dark: if_page3_ref.pmtiles
      default: dark
      light: if_page3_ref.pmtiles
  factors:
  - de: t12-xsi2024xeniumhbc-p12-a4-r5-bulk-de.tsv
    decode_id: t12-xsi2024xeniumhbc-p12-a4-r5
    id: t12-xsi2024xeniumhbc
    info: t12-xsi2024xeniumhbc-p12-a4-r5-info.tsv
    model: t12-xsi2024xeniumhbc-model-matrix.tsv.gz
    name: t12-xsi2024xeniumhbc
    pmtiles:
      hex_coarse: t12-xsi2024xeniumhbc.pmtiles
      hex_fine: t12-xsi2024xeniumhbc-p12-a4.pmtiles
      raster: t12-xsi2024xeniumhbc-p12-a4-r5-pixel-raster.pmtiles
    post: t12-xsi2024xeniumhbc-p12-a4-r5-posterior-counts.tsv.gz
    rgb: t12-xsi2024xeniumhbc-rgb.tsv
  - id: xeniumranger
    name: xeniumranger
    cells_id: xeniumranger
    rgb: xeniumranger-rgb.tsv
    de: xeniumranger-cells-bulk-de.tsv
    pmtiles:
      cells: xeniumranger-cells.pmtiles
      boundaries: xeniumranger-boundaries.pmtiles
  overview: sge-mono-dark.pmtiles
  sge:
    all: genes_all.pmtiles
    bins:
    - genes_bin1.pmtiles
    - genes_bin2.pmtiles
    - genes_bin3.pmtiles
    - genes_bin4.pmtiles
    - genes_bin5.pmtiles
    - genes_bin6.pmtiles
    - genes_bin7.pmtiles
    - genes_bin8.pmtiles
    - genes_bin9.pmtiles
    - genes_bin10.pmtiles
    - genes_bin11.pmtiles
    - genes_bin12.pmtiles
    - genes_bin13.pmtiles
    - genes_bin14.pmtiles
    - genes_bin15.pmtiles
    - genes_bin16.pmtiles
    - genes_bin17.pmtiles
    - genes_bin18.pmtiles
    - genes_bin19.pmtiles
    - genes_bin20.pmtiles
    - genes_bin21.pmtiles
    - genes_bin22.pmtiles
    - genes_bin23.pmtiles
    - genes_bin24.pmtiles
    - genes_bin25.pmtiles
    - genes_bin26.pmtiles
    - genes_bin27.pmtiles
    - genes_bin28.pmtiles
    - genes_bin29.pmtiles
    - genes_bin30.pmtiles
    - genes_bin31.pmtiles
    - genes_bin32.pmtiles
    - genes_bin33.pmtiles
    - genes_bin34.pmtiles
    - genes_bin35.pmtiles
    - genes_bin36.pmtiles
    - genes_bin37.pmtiles
    - genes_bin38.pmtiles
    - genes_bin39.pmtiles
    - genes_bin40.pmtiles
    - genes_bin41.pmtiles
    - genes_bin42.pmtiles
    - genes_bin43.pmtiles
    - genes_bin44.pmtiles
    - genes_bin45.pmtiles
    - genes_bin46.pmtiles
    - genes_bin47.pmtiles
    - genes_bin48.pmtiles
    - genes_bin49.pmtiles
    - genes_bin50.pmtiles
    counts: genes_bin_counts.json
id: xenium-human-breast-cancer-si2024-20241224
title: 10x Xenium Human Breast Cancer Analysis by FICTURE and XeniumRanger
