Published June 10, 2025 | Version 3.19.0
Software Open

nf-core/rnaseq: nf-core/rnaseq v3.19.0 - Tungsten Turtle

Creators

  • 1. Seqera
  • 2. @seqeralabs
  • 3. Boehringer Ingelheim
  • 4. @seanome
  • 5. @SciLifeLab
  • 6. Inivata
  • 7. @NBISweden
  • 8. Johns Hopkins University
  • 9. @qbicsoftware
  • 10. Seqera Labs
  • 11. Francis Crick Institute @crickbabs
  • 12. University of Pavia
  • 13. HKI Jena, MPI-EVA Leipzig
  • 14. >_ glicht
  • 15. CRG
  • 16. The Francis Crick Institute

Description

What's Changed

  • Bump versions after release 3.18.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1480
  • Update trimgalore module for save_unpaired fix by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1482
  • Bump STAR build for multiprocessing fix by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1486
  • Make genomic FASTA input optional by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1490
  • fix rendering of DE tutorial by @mashehu in https://github.com/nf-core/rnaseq/pull/1493
  • Bump MultiQC module to 1.27 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1499
  • Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1496
  • Fix missing Bracken results in the MultiQC report by @davidecarlson in https://github.com/nf-core/rnaseq/pull/1508
  • Update README.md by @AlenaNik in https://github.com/nf-core/rnaseq/pull/1518
  • updated the conda package version specification for Perl for the local module gtf2bed by @delagoya in https://github.com/nf-core/rnaseq/pull/1521
  • Update preprocessing subworkflow to fix linting block on trimming by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1523
  • Json schema improvements by @glichtenstein in https://github.com/nf-core/rnaseq/pull/1528
  • Make jobs automatically resubmit for exit code 175 by @fntlnz in https://github.com/nf-core/rnaseq/pull/1553
  • Unify summarised experiment by @atrigila in https://github.com/nf-core/rnaseq/pull/1550
  • Update index docs to remove references to 'indexing only mode' by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1556
  • Remove patches and bump modules for ARM compat by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1558
  • Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in https://github.com/nf-core/rnaseq/pull/1559
  • General modules update, include updating subworkflows for stats fixes by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1560
  • Version bumps ahead of 3.19.0 release by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1563
  • Improve reproducibility with Conda by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1565
  • Prerelease 3.19.0 fixes by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1567
  • Dev -> Master for 3.19.0 by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1564

New Contributors

  • @davidecarlson made their first contribution in https://github.com/nf-core/rnaseq/pull/1508
  • @AlenaNik made their first contribution in https://github.com/nf-core/rnaseq/pull/1518
  • @delagoya made their first contribution in https://github.com/nf-core/rnaseq/pull/1521
  • @glichtenstein made their first contribution in https://github.com/nf-core/rnaseq/pull/1528
  • @fntlnz made their first contribution in https://github.com/nf-core/rnaseq/pull/1553
  • @atrigila made their first contribution in https://github.com/nf-core/rnaseq/pull/1550

Full Changelog: https://github.com/nf-core/rnaseq/compare/3.18.0...3.19.0

Files

nf-core/rnaseq-3.19.0.zip

Files (7.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnaseq/tree/3.19.0 (URL)

Software

Repository URL
https://github.com/nf-core/rnaseq