sample,gene_id,total_cn,foldchange,gene_class
TCGA-DK-A2I4-01,ENSG00000229729,23,3.00853554654466,circular
TCGA-DK-AA6W-01,ENSG00000229729,18,1.76064829077063,circular
TCGA-PC-A5DM-01,ENSG00000229729,15,1.57107855982006,circular
TCGA-22-4593-01,ENSG00000229729,8,1.12155791868169,noncircular
TCGA-33-4586-01,ENSG00000229729,10,1.31476100714412,noncircular
TCGA-44-7670-01,ENSG00000229729,17,1.50184409204204,noncircular
TCGA-46-3768-01,ENSG00000229729,12,1.49088395379515,noncircular
TCGA-AB-2860-03,ENSG00000229729,5,5.49110020889557,noncircular
TCGA-D3-A1Q9-06,ENSG00000229729,8,1.10451188368963,noncircular
TCGA-VS-A9UP-01,ENSG00000229729,8,1.31112694674394,noncircular
TCGA-WE-A8ZR-06,ENSG00000229729,9,3.66604199945327,noncircular
TCGA-3B-A9HL-01,ENSG00000175899,23,0.901121230834802,circular
TCGA-61-2012-01,ENSG00000175899,12,0.209376826659994,circular
TCGA-DU-7007-01,ENSG00000175899,25,1.7867474126151,circular
TCGA-XE-AAOJ-01,ENSG00000175899,11,0.217431693626469,circular
TCGA-13-0762-01,ENSG00000175899,9,0.404485840920339,noncircular
TCGA-13-0891-01,ENSG00000175899,7,0.480097012748376,noncircular
TCGA-25-2392-01,ENSG00000175899,8,0.550167166761313,noncircular
TCGA-26-1442-01,ENSG00000175899,11,0.720803882632123,noncircular
TCGA-2G-AAEX-01,ENSG00000175899,10,0.41592429356114,noncircular
TCGA-2G-AAFJ-01,ENSG00000175899,7,0.683713871960347,noncircular
TCGA-2G-AAFO-01,ENSG00000175899,5,0.499617741892171,noncircular
TCGA-2G-AAFZ-01,ENSG00000175899,13,0.522311218031219,noncircular
TCGA-2G-AAG3-01,ENSG00000175899,6,1.20097755995797,noncircular
TCGA-2G-AAG5-01,ENSG00000175899,6,1.17458845302849,noncircular
TCGA-2G-AAG6-01,ENSG00000175899,15,1.53417493102184,noncircular
TCGA-2G-AAGC-01,ENSG00000175899,8,0.572388870515952,noncircular
TCGA-2G-AAGP-01,ENSG00000175899,15,0.661990847117236,noncircular
TCGA-2G-AAGV-01,ENSG00000175899,8,3.29939824045248,noncircular
TCGA-2G-AAGX-01,ENSG00000175899,7,1.63304623602316,noncircular
TCGA-2G-AAGY-01,ENSG00000175899,8,0.601425965294231,noncircular
TCGA-2G-AAH2-01,ENSG00000175899,9,0.376109014271587,noncircular
TCGA-2G-AAHG-01,ENSG00000175899,7,0.704736976717861,noncircular
TCGA-2G-AAKM-01,ENSG00000175899,10,0.442373601078377,noncircular
TCGA-2G-AALG-01,ENSG00000175899,9,1.08075371236392,noncircular
TCGA-2G-AALO-01,ENSG00000175899,10,0.948589638760131,noncircular
TCGA-2G-AALT-01,ENSG00000175899,8,2.0652973657284,noncircular
TCGA-2G-AALW-01,ENSG00000175899,7,0.750042942277194,noncircular
TCGA-2G-AALX-01,ENSG00000175899,7,0.615472067049963,noncircular
TCGA-2G-AALZ-01,ENSG00000175899,7,0.618072676555945,noncircular
TCGA-2G-AAM3-01,ENSG00000175899,10,1.88069609257358,noncircular
TCGA-85-8049-01,ENSG00000175899,7,0.357389112159605,noncircular
TCGA-91-7771-01,ENSG00000175899,8,1.95222411962322,noncircular
TCGA-A8-A09X-01,ENSG00000175899,7,0.434143297852265,noncircular
TCGA-AG-3731-01,ENSG00000175899,6,0.412094794321356,noncircular
TCGA-AO-A12F-01,ENSG00000175899,12,1.14615922304871,noncircular
TCGA-AR-A24Q-01,ENSG00000175899,7,2.66397616887191,noncircular
TCGA-BH-A0AV-01,ENSG00000175899,9,5.9912922622468,noncircular
TCGA-BH-A0B9-01,ENSG00000175899,5,0.479765533720948,noncircular
TCGA-C8-A12W-01,ENSG00000175899,8,0.570138593943438,noncircular
TCGA-D3-A1Q1-06,ENSG00000175899,7,0.406922082260967,noncircular
TCGA-D3-A3CC-06,ENSG00000175899,11,0.665064388399273,noncircular
TCGA-DA-A1I7-06,ENSG00000175899,7,1.35264084107257,noncircular
TCGA-DA-A95V-06,ENSG00000175899,15,0.603758368488202,noncircular
TCGA-DU-A5TU-01,ENSG00000175899,12,0.624298767015291,noncircular
TCGA-EB-A51B-01,ENSG00000175899,7,0.785778908201689,noncircular
TCGA-FG-A6J3-01,ENSG00000175899,13,2.90231712347177,noncircular
TCGA-FS-A1ZM-06,ENSG00000175899,15,9.94384414150431,noncircular
TCGA-GN-A8LL-06,ENSG00000175899,7,0.584258935862817,noncircular
TCGA-GU-A767-01,ENSG00000175899,7,0.425390722035311,noncircular
TCGA-HB-A3YV-01,ENSG00000175899,9,0.386074961252018,noncircular
TCGA-IG-A5S3-01,ENSG00000175899,10,0.400513226925925,noncircular
TCGA-L7-A56G-01,ENSG00000175899,10,0.475247331385472,noncircular
TCGA-N9-A4Q3-01,ENSG00000175899,8,0.592063589039742,noncircular
TCGA-RN-AAAQ-01,ENSG00000175899,7,4.11232762988159,noncircular
TCGA-SB-A6J6-01,ENSG00000175899,9,0.389392842214592,noncircular
TCGA-SN-A6IS-01,ENSG00000175899,8,0.482823824909416,noncircular
TCGA-SN-A84W-01,ENSG00000175899,8,0.885363546958843,noncircular
TCGA-SN-A84X-01,ENSG00000175899,13,0.625248894583595,noncircular
TCGA-VF-A8A9-01,ENSG00000175899,9,0.641802172963248,noncircular
TCGA-VF-A8AB-01,ENSG00000175899,10,0.689600992334818,noncircular
TCGA-W4-A7U3-01,ENSG00000175899,7,0.839553433837602,noncircular
TCGA-XE-A9SE-01,ENSG00000175899,12,0.420746935576493,noncircular
TCGA-XE-AANI-01,ENSG00000175899,8,0.521842318369725,noncircular
TCGA-XE-AANV-01,ENSG00000175899,9,0.440027931783485,noncircular
TCGA-XE-AAOC-01,ENSG00000175899,6,0.648492081860457,noncircular
TCGA-XY-A9T9-01,ENSG00000175899,9,0.675864791095679,noncircular
TCGA-YU-A90Y-01,ENSG00000175899,8,0.35552034016752,noncircular
TCGA-YU-AA61-01,ENSG00000175899,7,0.765608182875409,noncircular
TCGA-ZM-AA06-01,ENSG00000175899,6,0.463897429927009,noncircular
TCGA-ZM-AA0E-01,ENSG00000175899,7,0.466403045964148,noncircular
TCGA-2G-AAM2-01,ENSG00000166535,11,0.482009249320481,circular
TCGA-D8-A1JM-01,ENSG00000166535,8,4.89501505361479,circular
TCGA-KQ-A41Q-01,ENSG00000166535,13,1.5543547758446,circular
TCGA-YU-A90P-01,ENSG00000166535,13,0.655029483966538,circular
TCGA-13-0891-01,ENSG00000166535,7,0.352062663804805,noncircular
TCGA-18-3417-01,ENSG00000166535,12,2.96658830974302,noncircular
TCGA-21-5786-01,ENSG00000166535,9,0.822206165829433,noncircular
TCGA-22-5471-01,ENSG00000166535,12,3.48553099334648,noncircular
TCGA-2G-AAG3-01,ENSG00000166535,6,0.419144080544202,noncircular
TCGA-2G-AAGS-01,ENSG00000166535,7,0.640472558380268,noncircular
TCGA-2G-AAGV-01,ENSG00000166535,8,0.650514051411229,noncircular
TCGA-2G-AALX-01,ENSG00000166535,9,0.623307811228629,noncircular
TCGA-2G-AAM3-01,ENSG00000166535,10,0.592401618802498,noncircular
TCGA-2G-AAM4-01,ENSG00000166535,8,0.501291830880578,noncircular
TCGA-2J-AABI-01,ENSG00000166535,6,0.391144280689837,noncircular
TCGA-43-3394-01,ENSG00000166535,14,0.840393727098971,noncircular
TCGA-43-A56V-01,ENSG00000166535,5,7.61383897412255,noncircular
TCGA-44-5643-01,ENSG00000166535,6,10.116116309809,noncircular
TCGA-4Z-AA81-01,ENSG00000166535,9,3.38744408949709,noncircular
TCGA-63-5128-01,ENSG00000166535,7,0.620418539709783,noncircular
TCGA-66-2767-01,ENSG00000166535,11,3.42516246716853,noncircular
TCGA-66-2785-01,ENSG00000166535,8,2.52549765218693,noncircular
TCGA-77-7142-01,ENSG00000166535,5,0.760112470181709,noncircular
TCGA-85-8049-01,ENSG00000166535,7,1.12540380939236,noncircular
TCGA-85-8350-01,ENSG00000166535,9,0.567578471253226,noncircular
TCGA-85-A511-01,ENSG00000166535,9,1.1954183298375,noncircular
TCGA-85-A512-01,ENSG00000166535,9,2.2470872171796,noncircular
TCGA-85-A53L-01,ENSG00000166535,7,0.47223071325761,noncircular
TCGA-A2-A04T-01,ENSG00000166535,7,4.57401816729636,noncircular
TCGA-A2-A1G1-01,ENSG00000166535,19,5.84032374382708,noncircular
TCGA-A8-A07U-01,ENSG00000166535,6,2.13824757236942,noncircular
TCGA-AN-A0FJ-01,ENSG00000166535,9,1.17191565581989,noncircular
TCGA-B6-A0I2-01,ENSG00000166535,8,0.365539995673427,noncircular
TCGA-BH-A0AV-01,ENSG00000166535,9,0.470134209331502,noncircular
TCGA-BH-A18T-01,ENSG00000166535,7,4.10340742373291,noncircular
TCGA-BT-A20J-01,ENSG00000166535,8,0.366340224514147,noncircular
TCGA-BT-A20V-01,ENSG00000166535,7,2.19882442735762,noncircular
TCGA-C5-A8YQ-01,ENSG00000166535,7,4.7819471212583,noncircular
TCGA-CN-5359-01,ENSG00000166535,7,4.73896099166301,noncircular
TCGA-CN-6024-01,ENSG00000166535,8,4.88321799960544,noncircular
TCGA-CN-6994-01,ENSG00000166535,7,1.49801604191978,noncircular
TCGA-CU-A5W6-01,ENSG00000166535,9,4.79911883180434,noncircular
TCGA-CV-5430-01,ENSG00000166535,9,0.901422131537385,noncircular
TCGA-CV-5432-01,ENSG00000166535,13,4.24338169061698,noncircular
TCGA-CV-5440-01,ENSG00000166535,9,1.77064606248883,noncircular
TCGA-CV-7406-01,ENSG00000166535,7,12.7904490225416,noncircular
TCGA-DQ-7592-01,ENSG00000166535,7,0.882939025750308,noncircular
TCGA-E2-A1II-01,ENSG00000166535,5,0.686970060115229,noncircular
TCGA-EW-A6SB-01,ENSG00000166535,10,0.469611625541381,noncircular
TCGA-F7-7848-01,ENSG00000166535,8,5.78976790336798,noncircular
TCGA-FD-A62P-01,ENSG00000166535,10,1.0932044887367,noncircular
TCGA-HD-7754-01,ENSG00000166535,6,12.7436439618579,noncircular
TCGA-HD-A6HZ-01,ENSG00000166535,9,14.9343955684826,noncircular
TCGA-HT-A614-01,ENSG00000166535,6,0.527952711074347,noncircular
TCGA-IB-A7LX-01,ENSG00000166535,7,0.602455109986866,noncircular
TCGA-IG-A5S3-01,ENSG00000166535,10,3.15801965221507,noncircular
TCGA-IQ-A6SH-01,ENSG00000166535,6,1.2772412883343,noncircular
TCGA-KU-A66T-01,ENSG00000166535,7,2.2197044491437,noncircular
TCGA-L7-A56G-01,ENSG00000166535,10,9.57979546893857,noncircular
TCGA-LN-A49O-01,ENSG00000166535,8,1.12906645095489,noncircular
TCGA-LN-A4MR-01,ENSG00000166535,9,18.8153779447437,noncircular
TCGA-NK-A7XE-01,ENSG00000166535,8,0.485974082463632,noncircular
TCGA-O2-A52W-01,ENSG00000166535,8,4.42977884543369,noncircular
TCGA-S6-A8JW-01,ENSG00000166535,10,0.366859025495479,noncircular
TCGA-SN-A6IS-01,ENSG00000166535,8,0.345470885908208,noncircular
TCGA-SN-A84X-01,ENSG00000166535,13,2.15485381762522,noncircular
TCGA-SN-A84Y-01,ENSG00000166535,8,0.372930485873542,noncircular
TCGA-XE-AAO3-01,ENSG00000166535,11,0.370036137016524,noncircular
TCGA-YH-A8SY-01,ENSG00000166535,7,0.503667852319753,noncircular
TCGA-09-0366-01,ENSG00000087884,31,11.9704399606573,circular
TCGA-25-1319-01,ENSG00000087884,23,6.66946299416243,circular
TCGA-A2-A0ER-01,ENSG00000087884,24,8.29966537138453,circular
TCGA-A7-A3IZ-01,ENSG00000087884,30,6.35284107498313,circular
TCGA-A7-A4SB-01,ENSG00000087884,51,17.035450758115,circular
TCGA-A8-A079-01,ENSG00000087884,28,6.80040124845678,circular
TCGA-AN-A03Y-01,ENSG00000087884,54,15.2062464365317,circular
TCGA-AN-A0FV-01,ENSG00000087884,25,7.64139221735758,circular
TCGA-AO-A0JG-01,ENSG00000087884,21,6.88419718104249,circular
TCGA-AR-A2LJ-01,ENSG00000087884,27,7.13739627055674,circular
TCGA-BH-A0BD-01,ENSG00000087884,16,5.75330214264427,circular
TCGA-BH-A0HL-01,ENSG00000087884,12,5.73462912478179,circular
TCGA-BH-A1EN-01,ENSG00000087884,22,10.1616684435768,circular
TCGA-C8-A12Y-01,ENSG00000087884,27,7.20139297796277,circular
TCGA-E9-A247-01,ENSG00000087884,45,13.7543307809204,circular
TCGA-EB-A5SH-06,ENSG00000087884,28,9.8274979669453,circular
TCGA-EB-A82B-01,ENSG00000087884,40,8.36367482724663,circular
TCGA-ER-A19T-01,ENSG00000087884,41,10.0413831034454,circular
TCGA-GM-A3NW-01,ENSG00000087884,20,5.64100049516222,circular
TCGA-GN-A26D-06,ENSG00000087884,33,12.9321943577482,circular
TCGA-YG-AA3P-06,ENSG00000087884,46,11.2037101474153,circular
TCGA-13-0760-01,ENSG00000087884,6,1.1978576808715,noncircular
TCGA-13-0891-01,ENSG00000087884,8,1.72268218503086,noncircular
TCGA-13-1489-01,ENSG00000087884,7,1.40038026870484,noncircular
TCGA-25-1627-01,ENSG00000087884,8,1.21908518196962,noncircular
TCGA-33-4587-01,ENSG00000087884,8,1.73040626310948,noncircular
TCGA-95-7043-01,ENSG00000087884,7,1.4562258822306,noncircular
TCGA-A1-A0SO-01,ENSG00000087884,8,2.11689277035402,noncircular
TCGA-A2-A0EW-01,ENSG00000087884,12,1.51629767907703,noncircular
TCGA-A2-A1FX-01,ENSG00000087884,7,3.20432992304261,noncircular
TCGA-A8-A06Z-01,ENSG00000087884,7,1.35737469548405,noncircular
TCGA-A8-A07B-01,ENSG00000087884,13,1.37785608606005,noncircular
TCGA-A8-A086-01,ENSG00000087884,8,2.64521433814047,noncircular
TCGA-AO-A126-01,ENSG00000087884,11,2.50145505632176,noncircular
TCGA-AO-A12G-01,ENSG00000087884,7,1.46556479772886,noncircular
TCGA-AX-A3GI-01,ENSG00000087884,8,1.44347037427675,noncircular
TCGA-B6-A0I2-01,ENSG00000087884,10,1.23229118138735,noncircular
TCGA-BH-A0BR-01,ENSG00000087884,5,2.55905108284179,noncircular
TCGA-BH-A0E0-01,ENSG00000087884,8,2.25113301165166,noncircular
TCGA-C8-A12Q-01,ENSG00000087884,6,1.51932423068677,noncircular
TCGA-D6-A6EP-01,ENSG00000087884,8,3.43652740717294,noncircular
TCGA-DS-A5RQ-01,ENSG00000087884,6,1.34180067753767,noncircular
TCGA-E2-A14S-01,ENSG00000087884,6,2.17666495363946,noncircular
TCGA-E2-A155-01,ENSG00000087884,6,2.1452385394698,noncircular
TCGA-E9-A2JS-01,ENSG00000087884,9,1.1979398701327,noncircular
TCGA-EB-A41B-01,ENSG00000087884,5,1.34669434130467,noncircular
TCGA-ER-A3ES-06,ENSG00000087884,6,1.30615888630799,noncircular
TCGA-ER-A3EV-06,ENSG00000087884,14,1.71499282917291,noncircular
TCGA-G3-A25S-01,ENSG00000087884,9,4.72774803516566,noncircular
TCGA-GD-A6C6-01,ENSG00000087884,7,3.16977973680052,noncircular
TCGA-K4-A3WV-01,ENSG00000087884,11,1.46184210258855,noncircular
TCGA-LL-A6FQ-01,ENSG00000087884,9,1.57106896574336,noncircular
TCGA-S3-A6ZF-01,ENSG00000087884,8,1.57539718106158,noncircular
TCGA-VS-A9U7-01,ENSG00000087884,5,1.44644980059562,noncircular
TCGA-XJ-A9DX-01,ENSG00000087884,6,1.57290699106136,noncircular
TCGA-AR-A24R-01,ENSG00000131043,25,4.10155760662744,circular
TCGA-BH-A0H9-01,ENSG00000131043,10,3.84465256590536,circular
TCGA-EW-A2FW-01,ENSG00000131043,18,9.44505586500909,circular
TCGA-22-5471-01,ENSG00000131043,9,1.45764131787989,noncircular
TCGA-22-5477-01,ENSG00000131043,7,1.58139800795926,noncircular
TCGA-22-A5C4-01,ENSG00000131043,11,1.84958477522401,noncircular
TCGA-23-1110-01,ENSG00000131043,8,1.39659890659088,noncircular
TCGA-24-1928-01,ENSG00000131043,8,1.41382433371433,noncircular
TCGA-34-2600-01,ENSG00000131043,7,1.73091423132569,noncircular
TCGA-61-1741-01,ENSG00000131043,8,2.31625135271339,noncircular
TCGA-85-8664-01,ENSG00000131043,9,1.3579714455396,noncircular
TCGA-91-6828-01,ENSG00000131043,7,1.7865633020998,noncircular
TCGA-97-8172-01,ENSG00000131043,15,1.81810797148642,noncircular
TCGA-A2-A0YT-01,ENSG00000131043,9,1.68540524207839,noncircular
TCGA-A2-A1FW-01,ENSG00000131043,7,1.58528763215633,noncircular
TCGA-A6-5667-01,ENSG00000131043,10,1.94896868205121,noncircular
TCGA-A6-6140-01,ENSG00000131043,15,1.93316074446469,noncircular
TCGA-A6-6648-01,ENSG00000131043,9,1.43399878613415,noncircular
TCGA-A6-A56B-01,ENSG00000131043,7,1.38523410846788,noncircular
TCGA-A7-A2KD-01,ENSG00000131043,8,1.36315722633909,noncircular
TCGA-A8-A06U-01,ENSG00000131043,8,1.50386530389679,noncircular
TCGA-AA-3697-01,ENSG00000131043,12,1.46670911698902,noncircular
TCGA-AD-6888-01,ENSG00000131043,10,1.41228446701056,noncircular
TCGA-AN-A0AJ-01,ENSG00000131043,7,1.70882296128973,noncircular
TCGA-AN-A0AS-01,ENSG00000131043,11,1.72701564837429,noncircular
TCGA-AO-A03L-01,ENSG00000131043,9,1.67828314145732,noncircular
TCGA-AZ-6603-01,ENSG00000131043,10,1.52056978172052,noncircular
TCGA-BH-A0AU-01,ENSG00000131043,9,1.90297468093391,noncircular
TCGA-BH-A6R8-01,ENSG00000131043,6,1.66549474081346,noncircular
TCGA-BI-A0VS-01,ENSG00000131043,15,1.45585445306357,noncircular
TCGA-BQ-5891-01,ENSG00000131043,6,1.4566483399749,noncircular
TCGA-BR-7723-01,ENSG00000131043,12,1.97867446817393,noncircular
TCGA-C8-A12W-01,ENSG00000131043,8,1.40145764409044,noncircular
TCGA-C8-A1HM-01,ENSG00000131043,11,1.67119158247928,noncircular
TCGA-C8-A1HN-01,ENSG00000131043,7,1.87929849300871,noncircular
TCGA-CK-5914-01,ENSG00000131043,14,1.53662420336008,noncircular
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