Published March 4, 2022 | Version v1
Dataset Open

Table 2 in Emending Gymnopus sect. Gymnopus (Agaricales, Omphalotaceae) by including two new species from southern China

  • 1. State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510070, China & Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin 130118, China
  • 2. Department of Botany, Moravian Museum, Zelny trh 6, Brno CZ- 659 37, Czech Republic
  • 3. Tasmanian Institute of Agriculture, Private Bag 98, Hobart, Tasmania 7001, Australia
  • 4. Shenzhen Wildlife Conservation Division, Shenzhen, Guangdong 518048, China
  • 5. State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510070, China
  • 6. Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin 130118, China
  • 7. Guizhou institute of biology, Guizhou Academy of Sciences, Guiyang, Guizhou 550009, China

Description

Table 2. Information on DNA sequences used in the phylogenetic analyses. Newly generated sequences are highlighted in bold and type specimen is marked with an asterisk (*).

Taxon nameITSLSUCollection No.LocalityReference
Agaricales sp.AB859204AB859204Sw2-1JapanGenBank
G. adventitius nom. prov.KY026760KY026760SFSU:DED8813Not givenPetersen and Hughes (2016)
G. alliifoetidissimusMT023348MT017526GDGM 76695ChinaLi et al. (2021a)
G. androsaceusKY026750KY026750CULTENN5609USAPetersen and Hughes (2016)
G. androsaceusMH857175MH868714CBS 240.53FranceVu et al. 2019
G. androsaceusMH857174MH868713CBS 239.53FranceVu et al. 2019
G. androsaceusKY026748KY026748CULTENN5021h2CanadaPetersen and Hughes (2016)
G. androsaceusKY026663KY026663TENN:F-59594RussiaPetersen and Hughes (2016)
G. atlanticusKT222654KY302698URM 87728BrazilCoimbra et al. (2015)
G. aurantiipesAY263432AY639410SFSU:AWW118IndonesiaWilson et al. (2004)
G. brunneinigerMT232388MW187069XAL: Cesar50MexicoCésar et al. (2020)
G. brunneodiscusMH589973MH589988BRNM 714974South KoreaRyoo et al. (2020)
G. cremeostipitatusKF251071KF251091BRNM 747547South KoreaAntonín et al. (2014)
G. densilamellatusKP336685KP336694BRNM 714927South KoreaRyoo et al. (2016)
G. dryophiloidesMH589967MH589985BRNM 781447South KoreaRyoo et al. (2020)
G. dryophilusDQ241781AY640619TENN:F-57012Not givenMatheny et al. (2006)
G. dysodesKY026666FJ750265TENN:F-61125USAHughes and Petersen (2016)
G. foetidusKY026739KY026739TENN:F-69323USAHughes and Petersen (2016)
G. frigidomarginatus nom. prov.KY026648KY026648TENN:F-55679USAHughes and Petersen (2016)
G. fusipesAY256711AY256711TENN:F-59300AustriaMata et al. (2004)
G. fusipesKY026727KY026727TENN:F-69254SlovakiaHughes and Petersen (2016)
G. fusipesAY256710AY256710TENN:F-59217FranceMata et al. (2004)
G. impudicusLT594119LT594119BRNM 714849Czech RepublicRyoo et al. (2016)
G. inflatotrama nom. prov.KY026619KY026619TENN:F-48143USAHughes and Petersen (2016)
G. inflatotrama nom. prov.KY026744KY026744TFB 4529USAHughes and Petersen (2016)
G. inflatotrama nom. prov.KY026640KY026640TENN:F-53490USAHughes and Petersen (2016)
G. inflatotrama nom. prov.KY026632KY026632TENN:F-51233USAHughes and Petersen (2016)
G. inusitatusJN247553JN247557BCN:SCM B-4058SpainAntonín et al. (2012)
G. iocephalusDQ449984KY019630TENN:F-52970USAMata et al. (2007)
G. irresolutusMF100973UnavailableSFSU:DED 8209São ToméDesjardin and Perry (2017)
G. montagneiDQ449988AF261327JMCR 143Not givenMata et al. (2007)
G. neobrevipesMH673477MH673477TENN:F-14505USAPetersen and Hughes (2019)
G. novae-angliae nom. prov.KY026745KY026745CULTENN4975USAHughes and Petersen (2016)
G. novomundi nom. prov.KY026759KY026759SFSU-DED5097USAHughes and Petersen (2016)
G. ociorKY026678KY026678TENN:F-65135BelgiumHughes and Petersen (2016)
G. omphalinoides sp. nov.MW134044MW134730* GDGM 78318ChinaThis study
G. omphalinoides sp. nov.MW134047MW134733HMJU 00506ChinaThis study
G. omphalinoides sp. nov.MW134040MW134726GDGM 44411ChinaThis study
G. omphalinoides sp. nov.MW134045MW134731GDGM 78483ChinaThis study
G. omphalinoides sp. nov.OK087326UnavailableKUN-HKAS 107312ChinaThis study
G. pallipesMW582856OK087327GDGM 81513ChinaLi et al. (2021b) and this study
G. portoricensisKY026627KY026627TENN:F-50999Puerto RicoHughes and Petersen (2016)
G. schizophyllus sp. nov.MW134041MW134727GDGM 76287ChinaThis study
G. schizophyllus sp. nov.MW134042MW134728GDGM 77038ChinaThis study
G. schizophyllus sp. nov.MW134043MW134729* GDGM 77165ChinaThis study
G. schizophyllus sp. nov.MW134046MW134732KUN-HKAS 96494ChinaThis study
G. similisKP336690KP336697BRNM 714981South KoreaRyoo et al. (2016)
G. spongiosusKY026686KY026686TENN:F-65912USAHughes and Petersen (2016)
G. subsupinusKM975399KM975375PDD:96595New ZealandGenBank
G. talisiaeKT222655KX958401URM 87730BrazilCoimbra et al. (2015)
Ma. androsaceusJN943605JN941145Sara Landvik:NN008037SwedenAntonín et al. (2014)
Ma. androsaceusAF519893AF519891MUCL35155Not givenKlonowska et al. (2013)
Ma. otagensisMT974597MT974601PDD:106823New ZealandGenBank
Ma. otagensisMT974600MT974602PDD:113265New ZealandGenBank
Mi. foetidumKP877447UnavailableNEHU.MBSRJ.48IndiaBorthakur and Joshi (2016)
My. alliaceusKY696752KY696752TENN:F-55630RussiaPetersen and Hughes (2017)
My. scorodoniusKY696748KY696748TENN:F-53474USAPetersen and Hughes (2017)
Pa. perforansKY026625KY026625TENN:F-50319SwedenPetersen and Hughes (2017)

Notes

Published as part of Li, Ji-Peng, Antonin, Vladimir, Gates, Genevieve, Jiang, Lu, Li, Tai-Hui, Li, Yu, Song, Bin & Deng, Chun-Ying, 2022, Emending Gymnopus sect. Gymnopus (Agaricales, Omphalotaceae) by including two new species from southern China, pp. 183 in MycoKeys 87 on page 183, DOI: 10.3897/mycokeys.87.76125

Files

Files (18.5 kB)

Name Size Download all
md5:50aff11734b4649551c2b9e2cfdc7de0
18.5 kB Download

System files (58.7 kB)

Name Size Download all
md5:7eda45a6fa256d465f4002c71a3705bc
58.7 kB Download

Additional details

References

  • Petersen, RH, Hughes, KW, 2016. Micromphale sect. Perforantia (Agaricales, Basidiomycetes); expansion and phylogenetic placement. MycoKeys 18: 1 - 122, DOI: https://doi.org/10.3897/mycokeys.18.10007
  • Li, JP, Li, Y, Li, TH, Antonin, V, Hosen, MI, Song, B, Xie, ML, Feng, Z, 2021a. A preliminary report of Gymnopus sect. Impudicae (Omphalotaceae) from China. Phytotaxa 497 (3): 263 - 276, DOI: https://doi.org/10.11646/phytotaxa.497.3.5
  • Vu, D, Groenewald, M, de Vries, M, Gehrmann, T, Stielow, B, Eberhardt, U, Al-Hatmi, A, Groenewald, JZ, Cardinali, G, Houbraken, J, Boekhout, T, Crous, PW, Robert, V, Verkley, GJM, 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135 - 154, DOI: https://doi.org/10.1016/j.simyco.2018.05.001
  • Coimbra, VRM, Pinheiro, FGB, Wartchow, F, Gibertoni, TB, 2015. Studies on Gymnopus sect. Impudicae (Omphalotaceae, Agaricales) from Northern Brazil: two new species and notes on G. montagnei. Mycological Progress 14: e110. https://doi.org/10.1007/s11557-015-1131-2
  • Wilson, AW, Desjardin, DE, Horak, E, 2004. Agaricales of Indonesia. 5. The genus Gymnopus from Java and Bali. Sydowia 56 (1): 137 - 210
  • Cesar, E, Montoya, L, Bandala, VM, Ramos, A, 2020. Three new marasmioid-gymnopoid rhizomorph-forming species from Mexican mountain cloud forest relicts. Mycological Progress 19: 1017 - 1029, DOI: https://doi.org/10.1007/s11557-020-01608-1
  • Ryoo, R, Antonin, V, Ka, KH, 2020. Marasmioid and gymnopoid fungi of the Republic of Korea. 8. Gymnopus Section Levipedes. Mycobiology 48 (4): 252 - 262, DOI: https://doi.org/10.1080/12298093.2020.1769541
  • Antonin, V, Ryoo, R, Ka, KH, 2014. Marasmioid and gymnopoid fungi of the Republic of Korea. 7. Gymnopus sect. Androsacei. Mycological Progress 13: 703 - 718, DOI: https://doi.org/10.1007/s11557-013-0953-z
  • Ryoo, R, Antonin, V, Ka, KH, Tomsovsky, M, 2016. Marasmioid and gymnopoid fungi of the Republic of Korea. 8. Gymnopus section Impudicae. Phytotaxa 286 (2): 75 - 88, DOI: https://doi.org/10.11646/phytotaxa.286.2.2
  • Matheny, PB, Curtis, JM, Hofstetter, V, Aime, MC, Moncalvo, JM, Ge, ZW, Yang, ZL, Slot, JC, Ammirati, JF, Baroni, TJ, Bougher, NL, Hughes, KW, Lodge, DJ, Kerrigan, RW, Seidl, MT, Aanen, DK, DeNitis, M, Daniele, GM, Desjardin, DE, Kropp, BR, Norvell, LL, Parker, A, Vellinga, EC, Vilgalys, R, Hibbett, DS, 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982 - 995, DOI: https://doi.org/10.3852/mycologia.98.6.982
  • Mata, JL, Hughes, KW, Petersen, RH, 2004. Phylogenetic placement of Marasmiellus juniperinus. Mycoscience 45: 214 - 221, DOI: https://doi.org/10.1007/S10267-004-0170-3
  • Antonin, V, Finy, P, Tomsovsky, M, 2012. Taxonomy of the Gymnopus inusitatus group and the new G. inusitatus var. cystidiatus from Hungary. Mycotaxon 119: 291 - 299, DOI: https://doi.org/10.5248/119.291
  • Mata, JL, Hughes, KW, Petersen, RH, 2007. An investigation of Omphalotaceae (Fungi: Euagarics) with emphasis on the genus Gymnopus. Sydowia 58: 191 - 289
  • Desjardin, DE, Perry, BA, 2017. The gymnopoid fungi (Basidiomycota, Agaricales) from the Republic of Sao Tome and Principe, West Africa. Mycosphere 8 (9): 1317 - 1391, DOI: https://doi.org/10.5943/mycosphere/8/9/5
  • Petersen, RH, Hughes, KW, 2019. Two additional species of Gymnopus (Euagarics, Basidiomycotina). MycoKeys 45: 1 - 24, DOI: https://doi.org/10.3897/mycokeys.45.29350
  • Li, JP, Song, B, Feng, Z, Wang, J, Deng, CY, Yang, YH, 2021b. A new species of Gymnopus sect. Androsacei (Omphalotaceae, Agaricales) from China. Phytotaxa 52(1). https://doi.org/10.11646/phytotaxa.521.1.1
  • Borthakur, M, Joshi, SR, 2016. Micrographical analysis of growth deformities in common pathogens induced by voucher fungi from India. Journal of Microscopy and Ultrastructure 4: 203 - 210, DOI: https://doi.org/10.1016/j.jmau.2016.04.001
  • Petersen, RH, Hughes, KW, 2017. An investigation on Mycetinis (Euagarics, Basidiomycota). MycoKeys 24: 1 - 138, DOI: https://doi.org/10.3897/mycokeys.24.12846