Published March 4, 2022
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Table 2 in Emending Gymnopus sect. Gymnopus (Agaricales, Omphalotaceae) by including two new species from southern China
Creators
- 1. State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510070, China & Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin 130118, China
- 2. Department of Botany, Moravian Museum, Zelny trh 6, Brno CZ- 659 37, Czech Republic
- 3. Tasmanian Institute of Agriculture, Private Bag 98, Hobart, Tasmania 7001, Australia
- 4. Shenzhen Wildlife Conservation Division, Shenzhen, Guangdong 518048, China
- 5. State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, Guangdong 510070, China
- 6. Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun, Jilin 130118, China
- 7. Guizhou institute of biology, Guizhou Academy of Sciences, Guiyang, Guizhou 550009, China
Description
Table 2. Information on DNA sequences used in the phylogenetic analyses. Newly generated sequences are highlighted in bold and type specimen is marked with an asterisk (*).
| Taxon name | ITS | LSU | Collection No. | Locality | Reference |
|---|---|---|---|---|---|
| Agaricales sp. | AB859204 | AB859204 | Sw2-1 | Japan | GenBank |
| G. adventitius nom. prov. | KY026760 | KY026760 | SFSU:DED8813 | Not given | Petersen and Hughes (2016) |
| G. alliifoetidissimus | MT023348 | MT017526 | GDGM 76695 | China | Li et al. (2021a) |
| G. androsaceus | KY026750 | KY026750 | CULTENN5609 | USA | Petersen and Hughes (2016) |
| G. androsaceus | MH857175 | MH868714 | CBS 240.53 | France | Vu et al. 2019 |
| G. androsaceus | MH857174 | MH868713 | CBS 239.53 | France | Vu et al. 2019 |
| G. androsaceus | KY026748 | KY026748 | CULTENN5021h2 | Canada | Petersen and Hughes (2016) |
| G. androsaceus | KY026663 | KY026663 | TENN:F-59594 | Russia | Petersen and Hughes (2016) |
| G. atlanticus | KT222654 | KY302698 | URM 87728 | Brazil | Coimbra et al. (2015) |
| G. aurantiipes | AY263432 | AY639410 | SFSU:AWW118 | Indonesia | Wilson et al. (2004) |
| G. brunneiniger | MT232388 | MW187069 | XAL: Cesar50 | Mexico | César et al. (2020) |
| G. brunneodiscus | MH589973 | MH589988 | BRNM 714974 | South Korea | Ryoo et al. (2020) |
| G. cremeostipitatus | KF251071 | KF251091 | BRNM 747547 | South Korea | Antonín et al. (2014) |
| G. densilamellatus | KP336685 | KP336694 | BRNM 714927 | South Korea | Ryoo et al. (2016) |
| G. dryophiloides | MH589967 | MH589985 | BRNM 781447 | South Korea | Ryoo et al. (2020) |
| G. dryophilus | DQ241781 | AY640619 | TENN:F-57012 | Not given | Matheny et al. (2006) |
| G. dysodes | KY026666 | FJ750265 | TENN:F-61125 | USA | Hughes and Petersen (2016) |
| G. foetidus | KY026739 | KY026739 | TENN:F-69323 | USA | Hughes and Petersen (2016) |
| G. frigidomarginatus nom. prov. | KY026648 | KY026648 | TENN:F-55679 | USA | Hughes and Petersen (2016) |
| G. fusipes | AY256711 | AY256711 | TENN:F-59300 | Austria | Mata et al. (2004) |
| G. fusipes | KY026727 | KY026727 | TENN:F-69254 | Slovakia | Hughes and Petersen (2016) |
| G. fusipes | AY256710 | AY256710 | TENN:F-59217 | France | Mata et al. (2004) |
| G. impudicus | LT594119 | LT594119 | BRNM 714849 | Czech Republic | Ryoo et al. (2016) |
| G. inflatotrama nom. prov. | KY026619 | KY026619 | TENN:F-48143 | USA | Hughes and Petersen (2016) |
| G. inflatotrama nom. prov. | KY026744 | KY026744 | TFB 4529 | USA | Hughes and Petersen (2016) |
| G. inflatotrama nom. prov. | KY026640 | KY026640 | TENN:F-53490 | USA | Hughes and Petersen (2016) |
| G. inflatotrama nom. prov. | KY026632 | KY026632 | TENN:F-51233 | USA | Hughes and Petersen (2016) |
| G. inusitatus | JN247553 | JN247557 | BCN:SCM B-4058 | Spain | Antonín et al. (2012) |
| G. iocephalus | DQ449984 | KY019630 | TENN:F-52970 | USA | Mata et al. (2007) |
| G. irresolutus | MF100973 | Unavailable | SFSU:DED 8209 | São Tomé | Desjardin and Perry (2017) |
| G. montagnei | DQ449988 | AF261327 | JMCR 143 | Not given | Mata et al. (2007) |
| G. neobrevipes | MH673477 | MH673477 | TENN:F-14505 | USA | Petersen and Hughes (2019) |
| G. novae-angliae nom. prov. | KY026745 | KY026745 | CULTENN4975 | USA | Hughes and Petersen (2016) |
| G. novomundi nom. prov. | KY026759 | KY026759 | SFSU-DED5097 | USA | Hughes and Petersen (2016) |
| G. ocior | KY026678 | KY026678 | TENN:F-65135 | Belgium | Hughes and Petersen (2016) |
| G. omphalinoides sp. nov. | MW134044 | MW134730 | * GDGM 78318 | China | This study |
| G. omphalinoides sp. nov. | MW134047 | MW134733 | HMJU 00506 | China | This study |
| G. omphalinoides sp. nov. | MW134040 | MW134726 | GDGM 44411 | China | This study |
| G. omphalinoides sp. nov. | MW134045 | MW134731 | GDGM 78483 | China | This study |
| G. omphalinoides sp. nov. | OK087326 | Unavailable | KUN-HKAS 107312 | China | This study |
| G. pallipes | MW582856 | OK087327 | GDGM 81513 | China | Li et al. (2021b) and this study |
| G. portoricensis | KY026627 | KY026627 | TENN:F-50999 | Puerto Rico | Hughes and Petersen (2016) |
| G. schizophyllus sp. nov. | MW134041 | MW134727 | GDGM 76287 | China | This study |
| G. schizophyllus sp. nov. | MW134042 | MW134728 | GDGM 77038 | China | This study |
| G. schizophyllus sp. nov. | MW134043 | MW134729 | * GDGM 77165 | China | This study |
| G. schizophyllus sp. nov. | MW134046 | MW134732 | KUN-HKAS 96494 | China | This study |
| G. similis | KP336690 | KP336697 | BRNM 714981 | South Korea | Ryoo et al. (2016) |
| G. spongiosus | KY026686 | KY026686 | TENN:F-65912 | USA | Hughes and Petersen (2016) |
| G. subsupinus | KM975399 | KM975375 | PDD:96595 | New Zealand | GenBank |
| G. talisiae | KT222655 | KX958401 | URM 87730 | Brazil | Coimbra et al. (2015) |
| Ma. androsaceus | JN943605 | JN941145 | Sara Landvik:NN008037 | Sweden | Antonín et al. (2014) |
| Ma. androsaceus | AF519893 | AF519891 | MUCL35155 | Not given | Klonowska et al. (2013) |
| Ma. otagensis | MT974597 | MT974601 | PDD:106823 | New Zealand | GenBank |
| Ma. otagensis | MT974600 | MT974602 | PDD:113265 | New Zealand | GenBank |
| Mi. foetidum | KP877447 | Unavailable | NEHU.MBSRJ.48 | India | Borthakur and Joshi (2016) |
| My. alliaceus | KY696752 | KY696752 | TENN:F-55630 | Russia | Petersen and Hughes (2017) |
| My. scorodonius | KY696748 | KY696748 | TENN:F-53474 | USA | Petersen and Hughes (2017) |
| Pa. perforans | KY026625 | KY026625 | TENN:F-50319 | Sweden | Petersen and Hughes (2017) |
Notes
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Additional details
Identifiers
References
- Petersen, RH, Hughes, KW, 2016. Micromphale sect. Perforantia (Agaricales, Basidiomycetes); expansion and phylogenetic placement. MycoKeys 18: 1 - 122, DOI: https://doi.org/10.3897/mycokeys.18.10007
- Li, JP, Li, Y, Li, TH, Antonin, V, Hosen, MI, Song, B, Xie, ML, Feng, Z, 2021a. A preliminary report of Gymnopus sect. Impudicae (Omphalotaceae) from China. Phytotaxa 497 (3): 263 - 276, DOI: https://doi.org/10.11646/phytotaxa.497.3.5
- Vu, D, Groenewald, M, de Vries, M, Gehrmann, T, Stielow, B, Eberhardt, U, Al-Hatmi, A, Groenewald, JZ, Cardinali, G, Houbraken, J, Boekhout, T, Crous, PW, Robert, V, Verkley, GJM, 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Studies in Mycology 92: 135 - 154, DOI: https://doi.org/10.1016/j.simyco.2018.05.001
- Coimbra, VRM, Pinheiro, FGB, Wartchow, F, Gibertoni, TB, 2015. Studies on Gymnopus sect. Impudicae (Omphalotaceae, Agaricales) from Northern Brazil: two new species and notes on G. montagnei. Mycological Progress 14: e110. https://doi.org/10.1007/s11557-015-1131-2
- Wilson, AW, Desjardin, DE, Horak, E, 2004. Agaricales of Indonesia. 5. The genus Gymnopus from Java and Bali. Sydowia 56 (1): 137 - 210
- Cesar, E, Montoya, L, Bandala, VM, Ramos, A, 2020. Three new marasmioid-gymnopoid rhizomorph-forming species from Mexican mountain cloud forest relicts. Mycological Progress 19: 1017 - 1029, DOI: https://doi.org/10.1007/s11557-020-01608-1
- Ryoo, R, Antonin, V, Ka, KH, 2020. Marasmioid and gymnopoid fungi of the Republic of Korea. 8. Gymnopus Section Levipedes. Mycobiology 48 (4): 252 - 262, DOI: https://doi.org/10.1080/12298093.2020.1769541
- Antonin, V, Ryoo, R, Ka, KH, 2014. Marasmioid and gymnopoid fungi of the Republic of Korea. 7. Gymnopus sect. Androsacei. Mycological Progress 13: 703 - 718, DOI: https://doi.org/10.1007/s11557-013-0953-z
- Ryoo, R, Antonin, V, Ka, KH, Tomsovsky, M, 2016. Marasmioid and gymnopoid fungi of the Republic of Korea. 8. Gymnopus section Impudicae. Phytotaxa 286 (2): 75 - 88, DOI: https://doi.org/10.11646/phytotaxa.286.2.2
- Matheny, PB, Curtis, JM, Hofstetter, V, Aime, MC, Moncalvo, JM, Ge, ZW, Yang, ZL, Slot, JC, Ammirati, JF, Baroni, TJ, Bougher, NL, Hughes, KW, Lodge, DJ, Kerrigan, RW, Seidl, MT, Aanen, DK, DeNitis, M, Daniele, GM, Desjardin, DE, Kropp, BR, Norvell, LL, Parker, A, Vellinga, EC, Vilgalys, R, Hibbett, DS, 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia 98: 982 - 995, DOI: https://doi.org/10.3852/mycologia.98.6.982
- Mata, JL, Hughes, KW, Petersen, RH, 2004. Phylogenetic placement of Marasmiellus juniperinus. Mycoscience 45: 214 - 221, DOI: https://doi.org/10.1007/S10267-004-0170-3
- Antonin, V, Finy, P, Tomsovsky, M, 2012. Taxonomy of the Gymnopus inusitatus group and the new G. inusitatus var. cystidiatus from Hungary. Mycotaxon 119: 291 - 299, DOI: https://doi.org/10.5248/119.291
- Mata, JL, Hughes, KW, Petersen, RH, 2007. An investigation of Omphalotaceae (Fungi: Euagarics) with emphasis on the genus Gymnopus. Sydowia 58: 191 - 289
- Desjardin, DE, Perry, BA, 2017. The gymnopoid fungi (Basidiomycota, Agaricales) from the Republic of Sao Tome and Principe, West Africa. Mycosphere 8 (9): 1317 - 1391, DOI: https://doi.org/10.5943/mycosphere/8/9/5
- Petersen, RH, Hughes, KW, 2019. Two additional species of Gymnopus (Euagarics, Basidiomycotina). MycoKeys 45: 1 - 24, DOI: https://doi.org/10.3897/mycokeys.45.29350
- Li, JP, Song, B, Feng, Z, Wang, J, Deng, CY, Yang, YH, 2021b. A new species of Gymnopus sect. Androsacei (Omphalotaceae, Agaricales) from China. Phytotaxa 52(1). https://doi.org/10.11646/phytotaxa.521.1.1
- Borthakur, M, Joshi, SR, 2016. Micrographical analysis of growth deformities in common pathogens induced by voucher fungi from India. Journal of Microscopy and Ultrastructure 4: 203 - 210, DOI: https://doi.org/10.1016/j.jmau.2016.04.001
- Petersen, RH, Hughes, KW, 2017. An investigation on Mycetinis (Euagarics, Basidiomycota). MycoKeys 24: 1 - 138, DOI: https://doi.org/10.3897/mycokeys.24.12846