TABLE 2. Phylogenetic matrix partitioning schemes resulting from PartitionFinder 2 analysis.
Partition Model Gene regions included in partition
Analysis 1: nDNA
1 K80+Γ ARD1 and EF1α CDS1st codon positions
2 F81 ARD1 and EF1α CDS 2nd codon positions
3 GTR+Γ EF1α CDS 3rd codon position and introns, CAM introns
4 HKY+I ARD1 CDS 3rd codon position and UTR
Analysis 2: mtDNA
1 HKY+I+Γ 16S
2 HKY+I+Γ COI and COII 1st codon positions, COII 2nd codon position
3 GTR+I+Γ COI 2nd codon position
4 HKY+I+Γ COI and COII 3rd codon positions
Analysis 3: concatenated matrix
1 F81+I ARD1 and EF1α CDS 1st codon positions
2 GTR+Γ EF1α CDS 3rd codon position and introns, CAM introns
3 HKY+I+Γ ARD1 UTR and CDS 3rd codon position, and COI 2nd codon position
4 HKY+I+Γ 16S
5 HKY+I+Γ COI 1st codon position, COII 1st and 2nd codon positions
6 HKY+I+Γ COI and COII 3rd codon positions