Table 2. Characteristics of rps16-trnK, rps16 intron, rpl32-trnL, and ITS, and parameters used in Bayesian analyses indicated by Akaike Information Criterion (AIC).
|
rps16-trnK |
rps16 intron |
rpl32-trnL |
Combined plastid data |
ITS |
Overall |
| Total aligned characters |
738 |
845 |
904 |
2487 |
712 |
3199 |
| Number of sequences |
41 |
40 |
47 |
128 |
48 |
176 |
| Likelihood score (-ln L) |
1259.16 |
1449.21 |
1888.70 |
|
1989.55 |
|
| Number of substitution types |
6 |
6 |
6 |
- |
6 |
- |
| Model for among-sites rate variation |
gamma |
gamma |
gamma |
- |
gamma |
- |
| Substitution rates |
| rAC |
2.44683 |
2.33760 |
1.03926 |
- |
0.78611 |
- |
| rAG |
2.12801 |
1.84060 |
0.64852 |
|
2.03233 |
|
| rAT |
0.11415 |
0.31850 |
0.20833 |
|
1.27811 |
|
| rCG |
1.41016 |
0.78529 |
0.73967 |
|
0.31482 |
|
| rCT |
2.47892 |
2.54521 |
0.97480 |
|
5.07499 |
|
| rGT |
1.00000 |
1.00000 |
1.00000 |
|
1.00000 |
|
| Character state frequencies |
| fA |
0.28602 |
0.35597 |
0.36767 |
- |
0.22141 |
- |
| fC |
0.16385 |
0.15120 |
0.14893 |
|
0.29792 |
|
| fG |
0.16537 |
0.18750 |
0.13618 |
|
0.29123 |
|
| fT |
0.38477 |
0.30534 |
0.34722 |
|
0.18944 |
|
| Proportion of invariable sites |
0.37013 |
0.1041 |
0.36504 |
- |
0.30563 |
- |
| Substitution model |
TVM+G |
GTR+I+G |
GTR+G |
- |
GTR+I+G |
- |
| Gamma shape parameter (α) |
0.90138 |
0.45913 |
0.83500 |
- |
0.38018 |
- |