Bradipho Registration Utils

Registration Utils for visualization in the specimen space (https://bradipho.eu/). This is the early version used for data generation during the pilot phase of the project around OHBM 2023.

Requires Scilpy (https://github.com/scilus/scilpy), Bradiphopy (https://github.com/minilabus/bradiphopy) and AntsRegistration (https://github.com/ANTsX/ANTs)

From a folder with .trk or .tck, and a .nii or .nii.gz (optional) launch using :

The folders in the ZIP file should be merged with this GitHub repository
(specimen's folders have the same name so there are no conflicts)
We recommend using the Dockerfile on the GitHub repository.

bash ../bdp_registration_utils/launch_registration.sh $PWD "sub-01"