The transcriptome in the file Helianthemum_marifolium_transcriptome.fa has been assembled with two assemblers (Oases v0.28 and Trinity v2.8.6) and was subjected to the tr2aacds.pl script of EvidentialGene to remove redundancy. 
Thus, the headers contain critical information about each transcript.

Oases Headers:
Example: Locus_25_2_Transcript_4/10_Confidence_0.733_Length_996
	 Locus_25_2: A specific identifier for a locus.
	 4/10: Indicates a specific transcript from a locus.
	 Confidence_0.733: A confidence level associated with the transcript.
	 Length_996: The length of the transcript.

Trinity Headers:
Example: TRINITY_DN162650_c0_g1_i1
	 DN162650: The identifier for the specific transcript.
	 c0: Cluster number.
	 g1: Gene number in that cluster.
	 i1: The isoform of that gene.

After removing redundancy, EvidentialGene adds information about that process in the headers.

Example: Locus_25_2_Transcript_4/10_Confidence_0.733_Length_996 evgclass=main,okay,match:Locus_25_2_Transcript_1/10_Confidence_0.560_Length_941,pct:100/94/.; aalen=140,42%,complete-utrbad
	 Locus_25_2_Transcript_4/10_Confidence_0.733_Length_996: Transcript identifier.
 	 evgclass=main,okay: Classification of EvidentialGene.
		main: The transcript is considered primary.
		okay: Non-redundant coding sequence transcripts.
		alt: Alternate transcripts.
		drop: Redundant fragments or non-coding transcripts.
		noclass: The transcript does not fit into any specific category.
	 match:Locus_25_2_Transcript_1/10_Confidence_0.560_Length_941: Indicates similarity to another transcript, in this case, with Locus_25_2_Transcript_1/10_Confidence_0.560_Length_941.
	 pct:100/94/: 100 is the percentage of the transcript that aligns with a reference and 94 represents the percentage of the transcript that is considered to be of high quality or confidence in its alignment.
	 aalen=140,42%: Length of the associated protein domain in amino acids.
	 complete-utrbad: UTR quality.
	 	complete: Transcript is complete.
	 	complete-utrbad: Bad UTR quality.
	 	complete-utrpoor: Poor UTR quality.