Preview

bhklab-med-imagetools-3054cfe
- .coderabbit.yaml
  
  3.8 kB
- .gitattributes
  
  324 Bytes
- .github
  - workflows
    - build-pkg-manual.yml
      
      912 Bytes
    - main.yml
      
      7.5 kB
- .gitignore
  
  3.1 kB
- CHANGELOG.md
  
  26.1 kB
- Dockerfile
  
  882 Bytes
- LICENSE
  
  1.1 kB
- README.md
  
  6.9 kB
- config
  - coverage.toml
    
    207 Bytes
  - mypy.ini
    
    2.3 kB
  - pytest.ini
    
    2.3 kB
  - ruff.toml
    
    3.8 kB
- devnotes
  - testing.md
    
    1.1 kB
- docs
  - .pages
    
    75 Bytes
  - cli
    - .pages
      
      63 Bytes
    - AutoPipeline.md
      
      7.3 kB
    - imgtools.md
      
      159 Bytes
    - nnUNet.md
      
      8.4 kB
  - database_report.md
    
    11.4 kB
  - index.md
    
    217 Bytes
  - reference
    - dicom-utils
      - find-dicoms.md
        
        52 Bytes
      - tag-helpers.md
        
        127 Bytes
    - dicomsort
      - dicomsorter.md
        
        157 Bytes
      - patternparser.md
        
        175 Bytes
- images
  - autopipeline.png
    
    75.4 kB
  - dicomsort_help.png
    
    210.5 kB
  - graph.png
    
    464.5 kB
  - imgtools_help.png
    
    178.4 kB
- mkdocs.yml
  
  3.4 kB
- pixi.lock
  
  934.3 kB
- pixi.toml
  
  4.8 kB
- pyproject.toml
  
  2.6 kB
- src
  - imgtools
    - __init__.py
      
      225 Bytes
    - autopipeline.py
      
      41.3 kB
    - cli
      - __init__.py
        
        2.2 kB
      - __main__.py
        
        800 Bytes
      - dicomfind.py
        
        2.8 kB
      - dicomsort.py
        
        2.2 kB
      - testdatasets.py
        
        1.7 kB
    - datasets
      - __init__.py
        
        182 Bytes
      - github_helper.py
        
        13.2 kB
    - dicom
      - __init__.py
        
        159 Bytes
      - index
        
        __init__.py
        
        227 Bytes
        
        __main__.py
        
        2.4 kB
        
        database
        
        __init__.py
        
        243 Bytes
        
        database.py
        
        7.4 kB
        
        database_handler.py
        
        1.7 kB
        
        models
        
        __init__.py
        
        160 Bytes
        
        models.py
        
        12.5 kB
      - sort
        
        __init__.py
        
        2.9 kB
        
        dicomsorter.py
        
        14.6 kB
        
        exceptions.py
        
        1.0 kB
        
        highlighter.py
        
        1.0 kB
        
        parser.py
        
        5.7 kB
        
        path_limits.py
        
        3.4 kB
        
        sort_method.py
        
        5.0 kB
        
        sorter_base.py
        
        10.3 kB
        
        utils.py
        
        6.4 kB
      - utils.py
        
        8.0 kB
    - exceptions.py
      
      50 Bytes
    - io
      - __init__.py
        
        909 Bytes
      - loaders
        
        __init__.py
        
        610 Bytes
        
        old_loaders.py
        
        14.2 kB
      - writers
        
        __init__.py
        
        322 Bytes
        
        old_writers.py
        
        11.5 kB
    - logging
      - __init__.py
        
        1.7 kB
      - json_logging.py
        
        2.4 kB
      - logging_config.py
        
        6.0 kB
      - processors.py
        
        5.0 kB
    - modules
      - __init__.py
        
        430 Bytes
      - datagraph.py
        
        33.2 kB
      - dose.py
        
        5.2 kB
      - pet.py
        
        7.9 kB
      - scan.py
        
        226 Bytes
      - segmentation.py
        
        15.3 kB
      - sparsemask.py
        
        245 Bytes
      - structureset.py
        
        27.9 kB
      - utils.py
        
        419 Bytes
    - ops
      - README.md
        
        2.1 kB
      - __init__.py
        
        19 Bytes
      - base_classes.py
        
        3.9 kB
      - functional.py
        
        22.2 kB
      - input_classes.py
        
        8.0 kB
      - ops.py
        
        60.8 kB
    - pattern_parser
      - __init__.py
        
        202 Bytes
      - pattern_resolver.py
        
        5.2 kB
    - pipeline.py
      
      4.8 kB
    - py.typed
      
      0 Bytes
    - types.py
      
      7.0 kB
    - utils
      - __init__.py
        
        922 Bytes
      - args.py
        
        4.4 kB
      - autopipeutils.py
        
        4.7 kB
      - crawl.py
        
        12.1 kB
      - dicomutils.py
        
        3.1 kB
      - imageutils.py
        
        5.9 kB
      - nifti_to_dicom.py
        
        1.8 kB
      - nnunet.py
        
        4.7 kB
- tests
  - __init__.py
    
    0 Bytes
  - conf_helpers.py
    
    758 Bytes
  - conftest.py
    
    4.4 kB
  - datasets
    - test_github_helper.py
      
      1.2 kB
  - dicom
    - sort
      - test_parser.py
        
        3.8 kB
      - test_sort_method.py
        
        5.3 kB
      - test_sort_utils.py
        
        6.7 kB
      - test_sorter_base.py
        
        4.1 kB
    - test_dicom_utils.py
      
      4.6 kB
  - legacy_tests
    - dataset_check.py.deprecated
      
      6.8 kB
    - test_components.py
      
      4.0 kB
    - test_modalities.py
      
      1.9 kB
    - test_ops.py
      
      3.5 kB
    - test_pipeline.py
      
      4.7 kB
  - modules
    - test_structureset.py
      
      6.4 kB
  - pattern_resolver
    - test_pattern_resolver.py
      
      3.1 kB
  - test_conftest.py
    
    104 Bytes

bhklab/med-imagetools-v1.17.0.zip