Published September 28, 2020 | Version v1.8.1
Software Open

Funannotate v1.8.1: Eukaryotic genome annotation

Creators

  • 1. USDA Forest Service
  • 2. University of California-Riverside

Description

  • highly recommend all users upgrade
  • Code now python 2/3 compatible (only 9 months late....)
  • EVM now uses interlap for slicing input files, significant speed increase for larger genomes
  • if --organism other is passed, codingquarry is now disabled by default -- you can turn it on by specifying a valid weight, ie --weights codingquarry:2
  • support for signalp version 5
  • move resources to JSON download via GitHub, will allow for updating/changing resources without re-installing a new version of funannotate
  • several fixes for more robust GFF3 parsing
  • fix for cazyme assignments where results were duplicated; also upgraded to database version 8
  • fix bug where PASA results not properly passed to EVM if funannotate predict was re-run
  • many other bug fixes

Files

nextgenusfs/funannotate-v1.8.1.zip

Files (540.8 kB)

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md5:8da5aaa7a196d29afd364f6a49c1fbd7
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Additional details

Related works

Is supplement to
https://github.com/nextgenusfs/funannotate/tree/v1.8.1 (URL)