sourmash-bio/sourmash-v4.8.14.zip
sourmash-bio-sourmash-bc3c0f8
.cargo
config.toml
170 Bytes
.envrc
83 Bytes
.git-blame-ignore-revs
70 Bytes
.git_archival.txt
40 Bytes
.gitattributes
282 Bytes
.github
PULL_REQUEST_TEMPLATE.md
675 Bytes
dependabot.yml
578 Bytes
workflows
asv.yml
717 Bytes
build_wheel.yml
2.4 kB
build_wheel_all_archs.yml
2.1 kB
codspeed.yml
867 Bytes
dev_envs.yml
1.9 kB
draft-pdf.yml
658 Bytes
hypothesis.yml
765 Bytes
metadata.yml
485 Bytes
python.yml
2.2 kB
rust.yml
6.3 kB
.gitignore
369 Bytes
.pre-commit-config.yaml
711 Bytes
.readthedocs.yml
463 Bytes
.sonarcloud.properties
1 Byte
.zenodo.json
2.2 kB
CITATION.cff
6.5 kB
CODE_OF_CONDUCT.rst
1.7 kB
CONTRIBUTING.md
349 Bytes
Cargo.lock
57.4 kB
Cargo.toml
116 Bytes
LICENSE
1.9 kB
MANIFEST.in
238 Bytes
Makefile
1.2 kB
README.md
6.0 kB
asv.conf.json
549 Bytes
benchmarks
README.md
230 Bytes
__init__.py
1 Byte
benchmarks.py
6.4 kB
binder
README.md
78 Bytes
environment.yml
190 Bytes
codecov.yml
311 Bytes
codemeta.json
516 Bytes
data
GCF_000005845.2_ASM584v2_genomic.fna.gz
1.4 MB
GCF_000006945.1_ASM694v1_genomic.fna.gz
1.5 MB
GCF_000783305.1_ASM78330v1_genomic.fna.gz
1.6 MB
README.md
316 Bytes
eschericia-sigs.tar.gz
1.2 MB
default.nix
259 Bytes
deny.toml
1.0 kB
dev.yml
243 Bytes
doc
Makefile
8.1 kB
README.md
547 Bytes
_static
Sourmash_flow_diagrams_QC.png
40.5 kB
Sourmash_flow_diagrams_compute.png
17.2 kB
Sourmash_flow_diagrams_search.png
30.6 kB
cmp.matrix.png
23.0 kB
custom.css
163 Bytes
ecoli-cmp.Rmd
1.2 kB
ecoli-cmp.html
1.4 MB
ecoli.cmp.csv
51.5 kB
ecoli_cmp.matrix.png
142.0 kB
kmers-metapalette.png
203.2 kB
logo.png
140.7 kB
logo.svg
1.1 MB
schurch_comp.matrix.png
323.5 kB
shakya-unaligned-contigs.sig
192.7 kB
_templates
.empty
0 Bytes
api-example.md
27.7 kB
api.md
757 Bytes
classifying-signatures.md
33.0 kB
command-line.md
106.7 kB
conf.py
10.5 kB
databases-advanced.md
11.7 kB
databases.md
17.8 kB
dev_plugins.md
3.9 kB
developer.md
11.8 kB
faq.md
16.5 kB
funding.md
623 Bytes
genomes
akkermansia.fa
500.1 kB
shew_os185.fa
500.1 kB
shew_os223.fa
500.1 kB
index.md
6.2 kB
kmers-and-minhash.ipynb
81.0 kB
legacy-databases.md
4.4 kB
more-info.md
5.8 kB
other-languages.md
1.4 kB
plotting-compare.ipynb
108.0 kB
podar-lineage.csv
9.7 kB
publications.md
2.8 kB
release-notes
releases.md
231 Bytes
sourmash-2.0.md
2.9 kB
sourmash-3.0.md
2.3 kB
sourmash-4.0.md
3.8 kB
release.md
9.6 kB
requirements.md
761 Bytes
runtime.txt
5 Bytes
sidebar.md
1.8 kB
sourmash-collections.ipynb
90.1 kB
sourmash-examples.ipynb
33.4 kB
sourmash-internals.md
37.8 kB
sourmash-sketch.md
17.7 kB
storage.md
1.9 kB
support.md
11.3 kB
toc.md
660 Bytes
tutorial-basic.md
9.1 kB
tutorial-install.md
1.0 kB
tutorial-lemonade.md
21.1 kB
tutorial-lin-taxonomy.md
24.3 kB
tutorial-long.md
23.3 kB
tutorials-lca.md
6.6 kB
tutorials.md
2.0 kB
using-LCA-database-API.ipynb
23.9 kB
using-sourmash-a-guide.md
9.5 kB
flake.lock
2.0 kB
flake.nix
4.3 kB
include
sourmash.h
18.4 kB
matplotlibrc
14 Bytes
paper.bib
3.6 kB
paper.md
6.5 kB
pixi.lock
598.3 kB
pyproject.toml
9.4 kB
requirements.txt
10 Bytes
shell.nix
257 Bytes
src
core
CHANGELOG.md
17.0 kB
Cargo.toml
3.1 kB
README.md
1.6 kB
benches
compute.rs
5.0 kB
gather.rs
2.5 kB
minhash.rs
3.0 kB
nodegraph.rs
1.5 kB
build.rs
2.2 kB
cbindgen.toml
350 Bytes
examples
generate_mqfs.rs
2.6 kB
src
ani_utils.rs
11.5 kB
cmd.rs
7.0 kB
collection.rs
20.2 kB
encodings.rs
18.7 kB
errors.rs
7.4 kB
ffi
cmd
compute.rs
4.6 kB
mod.rs
17 Bytes
hyperloglog.rs
5.5 kB
index
mod.rs
1.1 kB
revindex.rs
7.8 kB
minhash.rs
13.3 kB
mod.rs
2.3 kB
nodegraph.rs
6.2 kB
signature.rs
9.6 kB
storage.rs
3.5 kB
utils.rs
8.4 kB
from.rs
3.8 kB
index
linear.rs
10.6 kB
mod.rs
14.6 kB
revindex
disk_revindex.rs
20.9 kB
mem_revindex.rs
14.7 kB
mod.rs
33.3 kB
search.rs
856 Bytes
lib.rs
1.8 kB
manifest.rs
19.0 kB
prelude.rs
737 Bytes
selection.rs
3.0 kB
signature.rs
65.7 kB
sketch
hyperloglog
estimators.rs
7.1 kB
mod.rs
14.8 kB
minhash.rs
55.7 kB
mod.rs
482 Bytes
nodegraph.rs
33.0 kB
storage
mod.rs
19.4 kB
rocksdb.rs
4.2 kB
wasm.rs
8.1 kB
tests
dedicated_worker.rs
169 Bytes
finch.rs
1 Byte
minhash.rs
31.2 kB
node.rs
145 Bytes
service_worker.rs
167 Bytes
shared_worker.rs
166 Bytes
storage.rs
5.0 kB
test.rs
101 Bytes
web.rs
160 Bytes
sourmash
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4.3 kB
__main__.py
572 Bytes
cli
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13 Bytes
__init__.py
5.6 kB
categorize.py
1.2 kB
compare.py
4.1 kB
compute.py
4.9 kB
gather.py
6.6 kB
import_csv.py
667 Bytes
index.py
2.8 kB
info.py
926 Bytes
lca
__init__.py
1.2 kB
classify.py
1.4 kB
compare_csv.py
1.4 kB
index.py
2.6 kB
rankinfo.py
722 Bytes
summarize.py
1.5 kB
migrate.py
299 Bytes
multigather.py
3.7 kB
plot.py
2.4 kB
prefetch.py
2.5 kB
sbt_combine.py
453 Bytes
scripts
__init__.py
1.7 kB
search.py
4.5 kB
sig
__init__.py
1.6 kB
cat.py
1.7 kB
check.py
3.1 kB
collect.py
2.6 kB
describe.py
1.6 kB
downsample.py
2.0 kB
export.py
1.0 kB
extract.py
2.5 kB
fileinfo.py
1.2 kB
filter.py
1.9 kB
flatten.py
1.7 kB
grep.py
3.1 kB
inflate.py
925 Bytes
ingest.py
1.3 kB
intersect.py
1.9 kB
kmers.py
3.8 kB
manifest.py
1.6 kB
merge.py
1.9 kB
overlap.py
1.4 kB
rename.py
1.7 kB
split.py
2.4 kB
subtract.py
1.7 kB
sketch
__init__.py
1.2 kB
dna.py
3.2 kB
fromfile.py
2.9 kB
protein.py
3.4 kB
translate.py
3.4 kB
storage
__init__.py
1.1 kB
convert.py
402 Bytes
tax
__init__.py
1.3 kB
annotate.py
3.1 kB
genome.py
5.1 kB
grep.py
2.6 kB
metagenome.py
4.8 kB
prepare.py
2.1 kB
summarize.py
2.2 kB
utils.py
9.3 kB
watch.py
1.2 kB
command_compute.py
18.3 kB
command_sketch.py
35.5 kB
commands.py
59.3 kB
compare.py
13.4 kB
distance_utils.py
13.9 kB
exceptions.py
2.0 kB
fig.py
2.4 kB
hll.py
3.8 kB
index
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43.4 kB
revindex.py
8.1 kB
sqlite_index.py
40.2 kB
lca
__init__.py
422 Bytes
__main__.py
1.1 kB
command_classify.py
5.3 kB
command_compare_csv.py
3.3 kB
command_index.py
13.3 kB
command_rankinfo.py
2.4 kB
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6.6 kB
lca_db.py
24.6 kB
lca_utils.py
7.3 kB
logging.py
3.9 kB
manifest.py
11.6 kB
minhash.py
42.1 kB
nodegraph.py
5.5 kB
np_utils.py
826 Bytes
picklist.py
10.9 kB
plugins.py
6.3 kB
save_load.py
15.7 kB
sbt.py
51.1 kB
sbt_storage.py
15.8 kB
sbtmh.py
2.2 kB
search.py
34.0 kB
sig
__init__.py
81 Bytes
__main__.py
53.2 kB
grep.py
4.6 kB
signature.py
15.0 kB
sketchcomparison.py
9.7 kB
sourmash_args.py
26.6 kB
sqlite_utils.py
2.4 kB
tax
__init__.py
27 Bytes
__main__.py
23.7 kB
tax_utils.py
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utils.py
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tests
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sourmash_tst_utils.py
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.sbt.v2
v2.0107d767a345eff67ecdaed2ee5cd7ba.sbt
19.0 kB
v2.4e94e60265e04f0763142e20b52c0da1.sbt
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v2.60f7e23c24a8d94791cc7a8680c493f9.sbt
18.9 kB
v2.6d6e87e1154e95b279e5e7db414bc37b.sbt
18.7 kB
v2.b59473c94ff2889eca5d7165936e64b3.sbt
19.0 kB
v2.f0c834bc306651d2b9321fb21d3e8d8f.sbt
19.0 kB
v2.f71e78178af9e45e6f1d87a0c53c465c.sbt
18.9 kB
v2.internal.0.sbt
50.0 kB
v2.internal.1.sbt
50.0 kB
v2.internal.2.sbt
50.0 kB
v2.internal.3.sbt
50.0 kB
v2.internal.4.sbt
50.0 kB
v2.internal.5.sbt
50.0 kB
.sbt.v3
0107d767a345eff67ecdaed2ee5cd7ba
19.0 kB
4e94e60265e04f0763142e20b52c0da1
18.9 kB
60f7e23c24a8d94791cc7a8680c493f9
18.9 kB
6d6e87e1154e95b279e5e7db414bc37b
18.7 kB
b59473c94ff2889eca5d7165936e64b3
19.0 kB
f0c834bc306651d2b9321fb21d3e8d8f
19.0 kB
f71e78178af9e45e6f1d87a0c53c465c
18.9 kB
internal.0
50.0 kB
internal.1
50.0 kB
internal.2
50.0 kB
internal.3
50.0 kB
internal.4
50.0 kB
internal.5
50.0 kB
.sbt.v5_mhmt
0107d767a345eff67ecdaed2ee5cd7ba
19.0 kB
4e94e60265e04f0763142e20b52c0da1
18.9 kB
60f7e23c24a8d94791cc7a8680c493f9
18.9 kB
6d6e87e1154e95b279e5e7db414bc37b
18.7 kB
b59473c94ff2889eca5d7165936e64b3
19.0 kB
f0c834bc306651d2b9321fb21d3e8d8f
19.0 kB
f71e78178af9e45e6f1d87a0c53c465c
18.9 kB
internal.0
371.9 kB
internal.1
371.9 kB
internal.2
371.9 kB
internal.3
371.9 kB
internal.4
371.9 kB
internal.5
371.9 kB
10x-example
barcodes.tsv
190 Bytes
barcodes_renamer.tsv
617 Bytes
possorted_genome_bam.bam
93.6 kB
possorted_genome_bam.bam.bai
68.9 kB
possorted_genome_bam_filtered.bam
150.8 kB
2+63.fa.sig
138.4 kB
2.fa.sig
137.9 kB
47+63-intersect.fa.sig
44.3 kB
47+63-multisig.sig
205.5 kB
47+63.fa.sig
137.5 kB
47-63-merge.sig
137.6 kB
47.fa.sig
90.4 kB
47.fa.sig.zip
43.6 kB
63.fa.sig
91.5 kB
63.fa.sig.zip
44.1 kB
GCF_000005845.2_ASM584v2_genomic.fna.gz.sig
240.5 kB
GCF_000006945.2-s500.sig
175.3 kB
bad-license.sig
20.9 kB
benchmark.dna.sig
20.9 kB
benchmark.input_prot.sig
21.1 kB
benchmark.prot.sig
20.8 kB
compare
genome-s10.fa.gz.sig
77.7 kB
genome-s11.fa.gz.sig
77.6 kB
labels_from-test.csv
608 Bytes
demo
SRR2060939_1.sig
18.9 kB
SRR2060939_2.sig
18.9 kB
SRR2241509_1.sig
18.9 kB
SRR2255622_1.sig
18.7 kB
SRR453566_1.sig
19.0 kB
SRR453569_1.sig
19.0 kB
SRR453570_1.sig
19.0 kB
doctest-data
GCF_000005845.2_ASM584v2_genomic.fna.gz.sig
22.8 kB
GCF_000006945.1_ASM694v1_genomic.fna.gz.sig
24.6 kB
GCF_000783305.1_ASM78330v1_genomic.fna.gz.sig
26.6 kB
duplicate-sigs
README.md
104 Bytes
fb2c4c88.k=31.scaled=1000.DNA.dup=0.63.sig
31.1 kB
fb2c4c88.k=31.scaled=1000.DNA.dup=100.63.sig
31.1 kB
fb2c4c88.k=31.scaled=1000.DNA.dup=2.63.sig
31.1 kB
fb2c4c88.k=31.scaled=1000.DNA.dup=3.63.sig
31.1 kB
ecoli.faa
1.3 kB
ecoli.genes.fna
3.6 kB
fake-abund
README.md
347 Bytes
matches.lca.json.gz
6.9 kB
query.sig.gz
56.9 kB
gather
GCF_000006945.2_ASM694v2_genomic.fna.gz.sig
43.3 kB
GCF_000007545.1_ASM754v1_genomic.fna.gz.sig
41.5 kB
GCF_000008105.1_ASM810v1_genomic.fna.gz.sig
42.0 kB
GCF_000008545.1_ASM854v1_genomic.fna.gz.sig
18.6 kB
GCF_000009085.1_ASM908v1_genomic.fna.gz.sig
15.7 kB
GCF_000009505.1_ASM950v1_genomic.fna.gz.sig
41.7 kB
GCF_000009525.1_ASM952v1_genomic.fna.gz.sig
41.1 kB
GCF_000011885.1_ASM1188v1_genomic.fna.gz.sig
40.2 kB
GCF_000016045.1_ASM1604v1_genomic.fna.gz.sig
42.6 kB
GCF_000016785.1_ASM1678v1_genomic.fna.gz.sig
18.4 kB
GCF_000018945.1_ASM1894v1_genomic.fna.gz.sig
19.1 kB
GCF_000195995.1_ASM19599v1_genomic.fna.gz.sig
44.7 kB
all-picklist.csv
8.9 kB
campy-picklist.csv
862 Bytes
combined.sig
55.4 kB
salmonella-picklist-diffcolumn.csv
2.3 kB
salmonella-picklist.csv
6.1 kB
thermotoga-picklist.csv
2.1 kB
gather-abund
genome-s10.fa.gz.sig
19.8 kB
genome-s11.fa.gz.sig
18.6 kB
genome-s12.fa.gz.sig
19.5 kB
reads-s10-s11.sig
47.9 kB
reads-s10x10-s11.sig
55.0 kB
genome-s10+s11.fa.gz
292.8 kB
genome-s10+s11.sig
77.8 kB
genome-s10+s11.sig.gz
19.6 kB
genome-s10-small.fa.gz
29.6 kB
genome-s10.fa.gz
146.5 kB
genome-s10.fa.gz.sig
35.4 kB
genome-s11.fa.gz
144.0 kB
genome-s11.fa.gz.msh.json_dump
11.5 kB
genome-s11.fa.gz.sig
35.4 kB
genome-s12.fa.gz
144.0 kB
genome-s12.fa.gz.sig
35.4 kB
hmp-sigs
G36354-matches.lca.json.gz
40.2 kB
G36354-matches.lineages.csv
2.0 kB
G36354-matches.sig.gz
351.5 kB
G36354.sig.gz
225.9 kB
README.md
120 Bytes
img
2706795855.sig
398 Bytes
638277004.sig
711 Bytes
lca
47+63.lca.json
22.1 kB
TARA_ANW_MAG_00005.sig
26.8 kB
TARA_ASE_MAG_00007.sig
20.1 kB
TARA_ASE_MAG_00031.fa.gz
644.7 kB
TARA_ASE_MAG_00031.sig
27.2 kB
TARA_PSW_MAG_00136.sig
65.2 kB
bad-spreadsheet-2.csv
333 Bytes
bad-spreadsheet-3.csv
52 Bytes
bad-spreadsheet.csv
205 Bytes
both.lca.json
98.9 kB
classify-by-both.csv
1.8 kB
delmont-1.csv
182 Bytes
delmont-1.lca.json
35.4 kB
delmont-1.tsv
130 Bytes
delmont-2.csv
144 Bytes
delmont-2.lca.json
35.4 kB
delmont-3.csv
154 Bytes
delmont-4.csv
160 Bytes
delmont-5.csv
150 Bytes
delmont-6.csv
190 Bytes
dir1
TARA_ANE_MAG_00011.fa.gz.sig
27.6 kB
TARA_ANE_MAG_00015.fa.gz.sig
16.5 kB
TARA_ANE_MAG_00041.fa.gz.sig
18.8 kB
TARA_ANE_MAG_00044.fa.gz.sig
12.9 kB
TARA_ANE_MAG_00063.fa.gz.sig
13.8 kB
TARA_ANE_MAG_00068.fa.gz.sig
13.2 kB
TARA_ANE_MAG_00069.fa.gz.sig
26.4 kB
TARA_ANW_MAG_00005.fa.gz.sig
26.8 kB
TARA_ANW_MAG_00020.fa.gz.sig
45.2 kB
TARA_ANW_MAG_00034.fa.gz.sig
18.1 kB
dir1.lca.json
50.8 kB
dir2
TARA_ANW_MAG_00051.fa.gz.sig
8.5 kB
TARA_ANW_MAG_00083.fa.gz.sig
24.6 kB
TARA_ANW_MAG_00084.fa.gz.sig
30.2 kB
TARA_ANW_MAG_00085.fa.gz.sig
25.8 kB
TARA_ASE_MAG_00007.fa.gz.sig
20.1 kB
TARA_ASE_MAG_00009.fa.gz.sig
12.9 kB
TARA_ASE_MAG_00015.fa.gz.sig
22.3 kB
TARA_ASE_MAG_00018.fa.gz.sig
17.9 kB
TARA_ASE_MAG_00028.fa.gz.sig
27.6 kB
TARA_ASE_MAG_00031.fa.gz.sig
27.2 kB
dir2.lca.json
48.6 kB
old-db-format-1.json
47.7 kB
podar-lineage.csv
9.7 kB
separate.csv
1.8 kB
tara-delmont-SuppTable3.csv
78.1 kB
tully-genome-sigs.classify.csv
216.0 kB
tully-query.delmont-db.sigs.classify.csv
125.5 kB
lca-root
TARA_MED_MAG_00029.fa.sig
214.0 kB
TOBG_MED-875.fna.gz.sig
116.7 kB
tax.csv
196 Bytes
leaves.sbt.json
1.2 kB
n10000
GCF_000005845.2_ASM584v2_genomic.fna.gz.sig.gz
93.3 kB
GCF_000006945.1_ASM694v1_genomic.fna.gz.sig.gz
93.3 kB
GCF_000783305.1_ASM78330v1_genomic.fna.gz.sig.gz
93.2 kB
num
47.fa.sig
25.1 kB
63.fa.sig
25.1 kB
picklist
empty.csv
1 Byte
prot
all.zip
281.1 kB
build.sh
326 Bytes
dayhoff
GCA_001593925.1_ASM159392v1_protein.faa.gz.sig
61.1 kB
GCA_001593935.1_ASM159393v1_protein.faa.gz.sig
85.7 kB
dayhoff.lca.json.gz
67.5 kB
dayhoff.sbt.zip
95.6 kB
dayhoff.zip
72.0 kB
dna-sig.noext
90.4 kB
dna-sig.sig.gz
43.5 kB
gtdb-subset-lineages.csv
280 Bytes
hp
GCA_001593925.1_ASM159392v1_protein.faa.gz.sig
42.8 kB
GCA_001593935.1_ASM159393v1_protein.faa.gz.sig
53.3 kB
hp.lca.json.gz
34.7 kB
hp.sbt.zip
65.7 kB
hp.zip
48.3 kB
protein
GCA_001593925.1_ASM159392v1_protein.faa.gz.sig
63.0 kB
GCA_001593935.1_ASM159393v1_protein.faa.gz.sig
88.7 kB
protein.lca.json.gz
74.7 kB
protein.sbt.zip
98.7 kB
protein.zip
74.1 kB
sbt-search-bug
bacteroides.sig
324.6 kB
empty.sig
290 Bytes
nano.sig
25.4 kB
scaled
all.lca.json
4.2 kB
all.sbt.zip
13.8 kB
empty-lineage.csv
77 Bytes
genome-s10+s11.fa.gz.sig
1.8 kB
genome-s10-small.fa.gz.sig
415 Bytes
genome-s10.fa.gz.sig
1.1 kB
genome-s11.fa.gz.sig
1.0 kB
genome-s12.fa.gz.sig
1.0 kB
mf.csv
1.6 kB
pathlist.txt
140 Bytes
scaled100
GCF_000005845.2_ASM584v2_genomic.fna.gz.sig.gz
423.9 kB
GCF_000006945.1_ASM694v1_genomic.fna.gz.sig.gz
450.4 kB
GCF_000783305.1_ASM78330v1_genomic.fna.gz.sig.gz
489.7 kB
shewanella.faa
901 Bytes
short-protein.fa
944 Bytes
short.bad.fa
1.0 kB
short.fa
1.0 kB
short.fa.msh.dump
19.8 kB
short.sig.gz
11.0 kB
short2.fa
993 Bytes
short3.fa
1.0 kB
sketch_fromfile
GCA_903797575.1_PARATYPHIC668_genomic.fna.gz
12.7 kB
GCA_903797575.1_PARATYPHIC668_protein.faa.gz
20.0 kB
salmonella-badseq.csv
183 Bytes
salmonella-dna-protein.zip
3.1 kB
salmonella-missing.csv
183 Bytes
salmonella-mult.csv
440 Bytes
salmonella-noname.csv
210 Bytes
salmonella.csv
243 Bytes
xxGCA_903797575.1_PARATYPHIC668_genomic.fna.gz
12.7 kB
xxGCA_903797575.1_PARATYPHIC668_protein.faa.gz
20.0 kB
sqlite
README.md
792 Bytes
delmont-6.csv
197 Bytes
index.sqldb
655.4 kB
lca-2.sqldb
663.6 kB
lca.sqldb
139.3 kB
prot.sqlmf
20.5 kB
shewanella-lineage.csv
355 Bytes
test.taxonomy.db
20.5 kB
subset.sbt.json
24.2 kB
tax
47+63_x_gtdb-rs202.gather.csv
845 Bytes
bacteria_refseq_lineage.csv
541 Bytes
gtdb-tax-grep.sigs.zip
132.3 kB
lemonade-MAG3.sig.gz
18.9 kB
lemonade-MAG3.x.gtdb.csv
927 Bytes
lemonade-MAG3.x.gtdb.matches.tax.csv
483 Bytes
lemonade-MAG3.x.gtdb.matches.zip
61.6 kB
protozoa_genbank_lineage.csv
316 Bytes
test-empty-line.taxonomy.csv
881 Bytes
test-empty-ranks-2.taxonomy.csv
713 Bytes
test-empty-ranks-2.taxonomy.db
12.3 kB
test-empty-ranks-3.taxonomy.csv
709 Bytes
test-empty-ranks-3.taxonomy.db
12.3 kB
test-empty-ranks.taxonomy.csv
758 Bytes
test-empty-ranks.taxonomy.db
12.3 kB
test-missing-ranks.taxonomy.csv
865 Bytes
test-strain.taxonomy.csv
899 Bytes
test.LIN-taxonomy.csv
346 Bytes
test.ictv-taxonomy.csv
1.4 kB
test.ncbi-taxonomy.csv
1.1 kB
test.taxonomy.csv
880 Bytes
test.taxonomy.db
12.3 kB
test1.gather.csv
1.8 kB
test1.gather.v450.csv
2.4 kB
test1.gather.with-lineages.csv
2.2 kB
test1.gather_old.csv
1.6 kB
test1.sig
47.7 kB
test1_x_gtdbrs202_genbank_euks.gather.csv
2.7 kB
track_abund
47.fa.sig
100.8 kB
63.fa.sig
102.0 kB
track_abund.zip
88.3 kB
v1.sbt.json
1.5 kB
v2.sbt.json
1.6 kB
v3.sbt.json
1.5 kB
v4.sbt.json
1.6 kB
v5.sbt.json
1.7 kB
v5_mhmt.sbt.json
1.7 kB
v6.sbt.json
1.8 kB
v6.sbt.zip
102.0 kB
v6.sbt.zip.mf.csv
951 Bytes
test__minhash_hypothesis.py
1.6 kB
test_api.py
2.5 kB
test_bugs.py
428 Bytes
test_cmd_signature.py
182.4 kB
test_cmd_signature_collect.py
21.3 kB
test_cmd_signature_fileinfo.py
13.3 kB
test_cmd_signature_grep.py
12.7 kB
test_compare.py
6.0 kB
test_deprecated.py
546 Bytes
test_distance_utils.py
15.9 kB
test_hll.py
3.8 kB
test_index.py
67.7 kB
test_index_protocol.py
39.6 kB
test_jaccard.py
8.0 kB
test_lca.py
114.7 kB
test_lca_db_protocol.py
3.9 kB
test_lca_functions.py
14.1 kB
test_manifest.py
6.7 kB
test_manifest_protocol.py
6.1 kB
test_minhash.py
106.2 kB
test_nodegraph.py
2.8 kB
test_np_utils.py
529 Bytes
test_picklist.py
3.5 kB
test_plugin_framework.py
16.1 kB
test_prefetch.py
32.9 kB
test_rustobj.py
372 Bytes
test_sbt.py
40.5 kB
test_search.py
26.2 kB
test_signature.py
21.0 kB
test_sketchcomparison.py
39.6 kB
test_sourmash.py
273.8 kB
test_sourmash_args.py
26.2 kB
test_sourmash_compute.py
32.1 kB
test_sourmash_sketch.py
70.9 kB
test_sqlite_index.py
29.4 kB
test_tax.py
212.9 kB
test_tax_utils.py
163.2 kB
test_test_framework.py
223 Bytes
tox.ini
5.7 kB
utils
.gitignore
67 Bytes
README.md
836 Bytes
cardinality_estimate_confidence.py
4.3 kB
check-tree.py
684 Bytes
compute-dna-mh-another-way.py
1.9 kB
compute-input-prot-another-way.py
2.7 kB
compute-prot-mh-another-way.py
2.8 kB
toml-to-zenodo-json.py
622 Bytes
trim-noV.sh
102 Bytes