open2c/cooler-v0.10.3.zip
open2c-cooler-0bec240
.github
codecov.yml
229 Bytes
dependabot.yml
208 Bytes
workflows
ci.yml
885 Bytes
publish.yml
734 Bytes
.gitignore
351 Bytes
.pre-commit-config.yaml
417 Bytes
.readthedocs.yml
653 Bytes
CHANGES.md
20.3 kB
CITATION.cff
2.2 kB
CONTRIBUTING.md
4.0 kB
LICENSE
1.5 kB
README.md
6.7 kB
docs
Makefile
7.4 kB
api.rst
2.1 kB
cli.rst
34.8 kB
concepts.rst
10.1 kB
conf.py
9.8 kB
cooler_logo.png
13.3 kB
datamodel.rst
13.0 kB
glossary.rst
1.2 kB
index.rst
902 Bytes
make_cli_rst.py
11.1 kB
quickstart.rst
3.7 kB
releasenotes.md
13 Bytes
requirements.txt
107 Bytes
schema.rst
163 Bytes
schema_v1.rst
2.7 kB
schema_v2.rst
3.2 kB
schema_v3.rst
14.2 kB
pyproject.toml
3.4 kB
src
cooler
__init__.py
902 Bytes
__main__.py
59 Bytes
_balance.py
13.1 kB
_logging.py
5.7 kB
_reduce.py
29.6 kB
_typing.py
525 Bytes
_version.py
336 Bytes
api.py
26.1 kB
cli
__init__.py
3.4 kB
_util.py
6.6 kB
balance.py
8.2 kB
cload.py
18.2 kB
coarsen.py
2.7 kB
csort.py
12.5 kB
digest.py
2.1 kB
dump.py
8.3 kB
fileops.py
3.2 kB
info.py
1.3 kB
load.py
11.0 kB
makebins.py
1.6 kB
merge.py
2.2 kB
show.py
8.1 kB
zoomify.py
7.7 kB
core
__init__.py
477 Bytes
_rangequery.py
17.8 kB
_selectors.py
5.4 kB
_tableops.py
6.5 kB
create
__init__.py
1.3 kB
_constants.py
480 Bytes
_create.py
42.5 kB
_ingest.py
38.2 kB
fileops.py
14.7 kB
parallel.py
9.1 kB
sandbox
__init__.py
0 Bytes
dask.py
5.8 kB
util.py
25.5 kB
tests
_common.py
1.5 kB
conftest.py
3.6 kB
data
aag2.chrom.sizes
73.0 kB
aag2.sample1.pairs
931.8 kB
dec2_20_pluslig_1pGene_grch38_UBR4_D_1nt.pairwise.sorted.cool
88.6 kB
hg19.GM12878-MboI.matrix.2000kb.bg2.gz
158.7 kB
hg19.GM12878-MboI.matrix.2000kb.coo.txt
403.2 kB
hg19.GM12878-MboI.matrix.2000kb.cool
122.5 kB
hg19.GM12878-MboI.pairs.subsample.blksrt.txt.gz
1.1 MB
hg19.GM12878-MboI.pairs.subsample.blksrt.txt.gz.px2
818.6 kB
hg19.GM12878-MboI.pairs.subsample.sorted.txt.gz
1.1 MB
hg19.GM12878-MboI.pairs.subsample.sorted.txt.gz.tbi
565.8 kB
hg19.IMR90-MboI.matrix.2000kb.npy
18.7 MB
hg19.bins.2000kb.bed.gz
4.9 kB
hg19.sample1.pairs
2.0 MB
manycontigs.1.coo
16.4 kB
manycontigs.1.cool
1.6 MB
manycontigs.chrom.sizes
160.0 kB
mm9.sample1.pairs
383.8 kB
odd.1.coo
16.4 kB
odd.1.cool
41.4 kB
odd.4.cool
39.7 kB
odd.chrom.sizes
25 Bytes
scool_test_file.scool
1.3 MB
toy.asymm.16.bg2
144 Bytes
toy.asymm.16.cool
46.5 kB
toy.asymm.2.bg2
1.1 kB
toy.asymm.2.cool
105.7 kB
toy.asymm.32.bg2
92 Bytes
toy.asymm.32.cool
60.8 kB
toy.asymm.4.bg2
546 Bytes
toy.asymm.4.cool
60.8 kB
toy.asymm.8.bg2
270 Bytes
toy.asymm.8.cool
60.8 kB
toy.bins.8.bed
82 Bytes
toy.bins.var.bed
153 Bytes
toy.chrom.sizes
16 Bytes
toy.fasta
78 Bytes
toy.fasta.fai
33 Bytes
toy.pairs
2.9 kB
toy.symm.upper.1.ob.bg2
2.2 kB
toy.symm.upper.1.ob.coo
741 Bytes
toy.symm.upper.1.zb.bg2
2.2 kB
toy.symm.upper.1.zb.coo
738 Bytes
toy.symm.upper.2.2x.cool
48.6 kB
toy.symm.upper.2.bg2
1.1 kB
toy.symm.upper.2.cool
87.2 kB
toy.symm.upper.2.mcool
200.5 kB
toy.symm.upper.4.bg2
546 Bytes
toy.symm.upper.4.cool
81.0 kB
toy.symm.upper.var.cool
42.5 kB
toy.symm.upper.var2x.cool
121.5 kB
toy_hash.pairs
3.0 kB
toy_hash.pairs.gz
625 Bytes
yeast.10kb.cool
1.8 MB
test_api.py
8.2 kB
test_balance.py
4.7 kB
test_cli.py
4.7 kB
test_cli_export.py
4.7 kB
test_cli_fileops.py
2.3 kB
test_cli_ingest.py
7.7 kB
test_cli_ops.py
6.4 kB
test_core.py
10.2 kB
test_create.py
13.9 kB
test_create_ingest.py
21.9 kB
test_create_sanitize.py
9.6 kB
test_fileops.py
5.9 kB
test_parallel.py
1.9 kB
test_reduce.py
7.7 kB
test_show.py
0 Bytes
test_util.py
9.8 kB