ID,pH,Temperature,wt_pct_aa_c_uncharged_polar,wt_pct_aa_c_positively_charged_polar,wt_pct_aa_c_negatively_charged_polar,wt_pct_aa_c_nonpolar,wt_pct_aa_c_aromatic,wt_pct_aa_c_aliphatic,wt_pct_aa_c_heterocyclic,wt_pct_aa_c_sulfur_containing,layer1_wt_pct_aa_c_uncharged_polar,layer1_wt_pct_aa_c_positively_charged_polar,layer1_wt_pct_aa_c_negatively_charged_polar,layer1_wt_pct_aa_c_nonpolar,layer1_wt_pct_aa_c_aromatic,layer1_wt_pct_aa_c_aliphatic,layer1_wt_pct_aa_c_heterocyclic,layer1_wt_pct_aa_c_sulfur_containing,layer2_wt_pct_aa_c_uncharged_polar,layer2_wt_pct_aa_c_positively_charged_polar,layer2_wt_pct_aa_c_negatively_charged_polar,layer2_wt_pct_aa_c_nonpolar,layer2_wt_pct_aa_c_aromatic,layer2_wt_pct_aa_c_aliphatic,layer2_wt_pct_aa_c_heterocyclic,layer2_wt_pct_aa_c_sulfur_containing,layer3_wt_pct_aa_c_uncharged_polar,layer3_wt_pct_aa_c_positively_charged_polar,layer3_wt_pct_aa_c_negatively_charged_polar,layer3_wt_pct_aa_c_nonpolar,layer3_wt_pct_aa_c_aromatic,layer3_wt_pct_aa_c_aliphatic,layer3_wt_pct_aa_c_heterocyclic,layer3_wt_pct_aa_c_sulfur_containing,WT_Pct_Buried_Residue,WT_Pct_Exposed_Residue,WT_Pct_Buried_Residue_Layer1,WT_Pct_Exposed_Residue_Layer1,WT_Pct_Buried_Residue_Layer2,WT_Pct_Exposed_Residue_Layer2,WT_Pct_Buried_Residue_Layer3,WT_Pct_Exposed_Residue_Layer3,wt_pct_ss_H,wt_pct_ss_B,wt_pct_ss_E,wt_pct_ss_G,wt_pct_ss_I,wt_pct_ss_T,wt_pct_ss_S,wt_pct_ss_-,layer1_wt_pct_ss_H,layer1_wt_pct_ss_B,layer1_wt_pct_ss_E,layer1_wt_pct_ss_G,layer1_wt_pct_ss_I,layer1_wt_pct_ss_T,layer1_wt_pct_ss_S,layer1_wt_pct_ss_-,layer2_wt_pct_ss_H,layer2_wt_pct_ss_B,layer2_wt_pct_ss_E,layer2_wt_pct_ss_G,layer2_wt_pct_ss_I,layer2_wt_pct_ss_T,layer2_wt_pct_ss_S,layer2_wt_pct_ss_-,layer3_wt_pct_ss_H,layer3_wt_pct_ss_B,layer3_wt_pct_ss_E,layer3_wt_pct_ss_G,layer3_wt_pct_ss_I,layer3_wt_pct_ss_T,layer3_wt_pct_ss_S,layer3_wt_pct_ss_-,WT_Pct_coils,WT_Pct_rem465,WT_Pct_hotloop,WT_NMA_Fluctuation,wt_foldx_total energy,wt_foldx_Backbone Hbond,wt_foldx_Sidechain Hbond,wt_foldx_Van der Waals,wt_foldx_Electrostatics,wt_foldx_Solvation Polar,wt_foldx_Solvation Hydrophobic,wt_foldx_Van der Waals clashes,wt_foldx_entropy sidechain,wt_foldx_entropy mainchain,wt_foldx_sloop_entropy,wt_foldx_mloop_entropy,wt_foldx_cis_bond,wt_foldx_torsional clash,wt_foldx_backbone clash,wt_foldx_helix dipole,wt_foldx_water bridge,wt_foldx_disulfide,wt_foldx_electrostatic kon,wt_foldx_partial covalent bonds,wt_foldx_energy Ionisation,wt_foldx_Entropy Complex,WT_Num_HBOND_Ring,WT_Num_SSBOND_Ring,WT_Num_IONIC_Ring,WT_Num_VDW_Ring,WT_Num_PICATION_Ring,WT_Num_PIPISTACK_Ring,WT_Num_HBOND_Ring_Layer1,WT_Num_SSBOND_Ring_Layer1,WT_Num_IONIC_Ring_Layer1,WT_Num_VDW_Ring_Layer1,WT_Num_PICATION_Ring_Layer1,WT_Num_PIPISTACK_Ring_Layer1,WT_Num_HBOND_Ring_Layer2,WT_Num_SSBOND_Ring_Layer2,WT_Num_IONIC_Ring_Layer2,WT_Num_VDW_Ring_Layer2,WT_Num_PICATION_Ring_Layer2,WT_Num_PIPISTACK_Ring_Layer2,WT_Num_HBOND_Ring_Layer3,WT_Num_SSBOND_Ring_Layer3,WT_Num_IONIC_Ring_Layer3,WT_Num_VDW_Ring_Layer3,WT_Num_PICATION_Ring_Layer3,WT_Num_PIPISTACK_Ring_Layer3,WT_Num_HD_Cluster_Protlego,WT_Num_HD_Cluster_Protlego_Layer1,WT_Num_HD_Cluster_Protlego_Layer2,WT_Num_HD_Cluster_Protlego_Layer3,WT_Max_HD_Cluster_Area,wt_num_pharm_c_hb_acceptors,wt_num_pharm_c_hb_donors,wt_num_pharm_c_positives,wt_num_pharm_c_negatives,wt_num_pharm_c_aromatics,wt_num_pharm_c_aliphatics,wt_num_pharm_c_hydrophobics,wt_num_pharm_c_ring,layer1_wt_num_pharm_c_hb_acceptors,layer1_wt_num_pharm_c_hb_donors,layer1_wt_num_pharm_c_positives,layer1_wt_num_pharm_c_negatives,layer1_wt_num_pharm_c_aromatics,layer1_wt_num_pharm_c_aliphatics,layer1_wt_num_pharm_c_hydrophobics,layer1_wt_num_pharm_c_ring,layer2_wt_num_pharm_c_hb_acceptors,layer2_wt_num_pharm_c_hb_donors,layer2_wt_num_pharm_c_positives,layer2_wt_num_pharm_c_negatives,layer2_wt_num_pharm_c_aromatics,layer2_wt_num_pharm_c_aliphatics,layer2_wt_num_pharm_c_hydrophobics,layer2_wt_num_pharm_c_ring,layer3_wt_num_pharm_c_hb_acceptors,layer3_wt_num_pharm_c_hb_donors,layer3_wt_num_pharm_c_positives,layer3_wt_num_pharm_c_negatives,layer3_wt_num_pharm_c_aromatics,layer3_wt_num_pharm_c_aliphatics,layer3_wt_num_pharm_c_hydrophobics,layer3_wt_num_pharm_c_ring,WT_HD_Cluster_Area,WT_B_Factor,WT_Psi,WT_Phi,WT_RSA,"wt_aaindex1_alpha-CH chemical shifts (Andersen et al., 1992)","wt_aaindex1_Hydrophobicity index (Argos et al., 1982)","wt_aaindex1_Signal sequence helical potential (Argos et al., 1982)","wt_aaindex1_Membrane-buried preference parameters (Argos et al., 1982)","wt_aaindex1_Conformational parameter of inner helix (Beghin-Dirkx, 1975)","wt_aaindex1_Conformational parameter of beta-structure (Beghin-Dirkx, 1975)","wt_aaindex1_Conformational parameter of beta-turn (Beghin-Dirkx, 1975)","wt_aaindex1_Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)","wt_aaindex1_Residue volume (Bigelow, 1967)","wt_aaindex1_Information value for accessibility; average fraction 35% (Biou et al., 1988)","wt_aaindex1_Information value for accessibility; average fraction 23% (Biou et al., 1988)","wt_aaindex1_Retention coefficient in TFA (Browne et al., 1982)","wt_aaindex1_Retention coefficient in HFBA (Browne et al., 1982)","wt_aaindex1_Transfer free energy to surface (Bull-Breese, 1974)","wt_aaindex1_Apparent partial specific volume (Bull-Breese, 1974)","wt_aaindex1_alpha-NH chemical shifts (Bundi-Wuthrich, 1979)","wt_aaindex1_alpha-CH chemical shifts (Bundi-Wuthrich, 1979)","wt_aaindex1_Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)","wt_aaindex1_Normalized frequency of alpha-helix (Burgess et al., 1974)","wt_aaindex1_Normalized frequency of extended structure (Burgess et al., 1974)","wt_aaindex1_Steric parameter (Charton, 1981)","wt_aaindex1_Polarizability parameter (Charton-Charton, 1982)","wt_aaindex1_Free energy of solution in water, kcal/mole (Charton-Charton, 1982)","wt_aaindex1_The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)",wt_aaindex1_A parameter defined from the residuals obtained from the best correlation of,"wt_aaindex1_The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)","wt_aaindex1_The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)","wt_aaindex1_The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)","wt_aaindex1_The number of bonds in the longest chain (Charton-Charton, 1983)","wt_aaindex1_A parameter of charge transfer capability (Charton-Charton, 1983)","wt_aaindex1_A parameter of charge transfer donor capability (Charton-Charton, 1983)","wt_aaindex1_Average volume of buried residue (Chothia, 1975)","wt_aaindex1_Residue accessible surface area in tripeptide (Chothia, 1976)","wt_aaindex1_Residue accessible surface area in folded protein (Chothia, 1976)","wt_aaindex1_Proportion of residues 95% buried (Chothia, 1976)","wt_aaindex1_Proportion of residues 100% buried (Chothia, 1976)","wt_aaindex1_Normalized frequency of beta-turn (Chou-Fasman, 1978a)","wt_aaindex1_Normalized frequency of alpha-helix (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of beta-sheet (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of beta-turn (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)","wt_aaindex1_Frequency of the 1st residue in turn (Chou-Fasman, 1978b)","wt_aaindex1_Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)","wt_aaindex1_Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)","wt_aaindex1_Frequency of the 4th residue in turn (Chou-Fasman, 1978b)","wt_aaindex1_Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)","wt_aaindex1_Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)","wt_aaindex1_Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)","wt_aaindex1_Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)","wt_aaindex1_Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)","wt_aaindex1_Normalized average hydrophobicity scales (Cid et al., 1992)","wt_aaindex1_Partial specific volume (Cohn-Edsall, 1943)","wt_aaindex1_Normalized frequency of middle helix (Crawford et al., 1973)","wt_aaindex1_Normalized frequency of beta-sheet (Crawford et al., 1973)","wt_aaindex1_Normalized frequency of turn (Crawford et al., 1973)","wt_aaindex1_Size (Dawson, 1972)","wt_aaindex1_Amino acid composition (Dayhoff et al., 1978a)","wt_aaindex1_Relative mutability (Dayhoff et al., 1978b)","wt_aaindex1_Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)","wt_aaindex1_Average membrane preference: AMP07 (Degli Esposti et al., 1990)","wt_aaindex1_Consensus normalized hydrophobicity scale (Eisenberg, 1984)","wt_aaindex1_Solvation free energy (Eisenberg-McLachlan, 1986)","wt_aaindex1_Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)","wt_aaindex1_Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)","wt_aaindex1_Molecular weight (Fasman, 1976)","wt_aaindex1_Melting point (Fasman, 1976)","wt_aaindex1_Optical rotation (Fasman, 1976)","wt_aaindex1_pK-N (Fasman, 1976)","wt_aaindex1_pK-C (Fasman, 1976)","wt_aaindex1_Hydrophobic parameter pi (Fauchere-Pliska, 1983)","wt_aaindex1_Graph shape index (Fauchere et al., 1988)","wt_aaindex1_Smoothed upsilon steric parameter (Fauchere et al., 1988)","wt_aaindex1_Normalized van der Waals volume (Fauchere et al., 1988)","wt_aaindex1_STERIMOL length of the side chain (Fauchere et al., 1988)","wt_aaindex1_STERIMOL minimum width of the side chain (Fauchere et al., 1988)","wt_aaindex1_STERIMOL maximum width of the side chain (Fauchere et al., 1988)","wt_aaindex1_N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)","wt_aaindex1_Localized electrical effect (Fauchere et al., 1988)","wt_aaindex1_Number of hydrogen bond donors (Fauchere et al., 1988)","wt_aaindex1_Number of full nonbonding orbitals (Fauchere et al., 1988)","wt_aaindex1_Positive charge (Fauchere et al., 1988)","wt_aaindex1_Negative charge (Fauchere et al., 1988)","wt_aaindex1_pK-a(RCOOH) (Fauchere et al., 1988)","wt_aaindex1_Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)","wt_aaindex1_Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)","wt_aaindex1_Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)","wt_aaindex1_Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)","wt_aaindex1_Helix termination parameter at posision j+1 (Finkelstein et al., 1991)","wt_aaindex1_Partition coefficient (Garel et al., 1973)","wt_aaindex1_Alpha-helix indices (Geisow-Roberts, 1980)","wt_aaindex1_Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Beta-strand indices (Geisow-Roberts, 1980)","wt_aaindex1_Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Aperiodic indices (Geisow-Roberts, 1980)","wt_aaindex1_Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Aperiodic indices for beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)","wt_aaindex1_Hydrophobicity factor (Goldsack-Chalifoux, 1973)","wt_aaindex1_Residue volume (Goldsack-Chalifoux, 1973)","wt_aaindex1_Composition (Grantham, 1974)","wt_aaindex1_Polarity (Grantham, 1974)","wt_aaindex1_Volume (Grantham, 1974)","wt_aaindex1_Partition energy (Guy, 1985)","wt_aaindex1_Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)","wt_aaindex1_Hydrophilicity value (Hopp-Woods, 1981)","wt_aaindex1_Heat capacity (Hutchens, 1970)","wt_aaindex1_Absolute entropy (Hutchens, 1970)","wt_aaindex1_Entropy of formation (Hutchens, 1970)","wt_aaindex1_Normalized relative frequency of alpha-helix (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of extended structure (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of bend (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of bend R (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of bend S (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of helix end (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of double bend (Isogai et al., 1980)","wt_aaindex1_Normalized relative frequency of coil (Isogai et al., 1980)","wt_aaindex1_Average accessible surface area (Janin et al., 1978)","wt_aaindex1_Percentage of buried residues (Janin et al., 1978)","wt_aaindex1_Percentage of exposed residues (Janin et al., 1978)","wt_aaindex1_Ratio of buried and accessible molar fractions (Janin, 1979)","wt_aaindex1_Transfer free energy (Janin, 1979)","wt_aaindex1_Hydrophobicity (Jones, 1975)","wt_aaindex1_pK (-COOH) (Jones, 1975)","wt_aaindex1_Relative frequency of occurrence (Jones et al., 1992)","wt_aaindex1_Relative mutability (Jones et al., 1992)","wt_aaindex1_Amino acid distribution (Jukes et al., 1975)","wt_aaindex1_Sequence frequency (Jungck, 1978)","wt_aaindex1_Average relative probability of helix (Kanehisa-Tsong, 1980)","wt_aaindex1_Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)","wt_aaindex1_Average relative probability of inner helix (Kanehisa-Tsong, 1980)","wt_aaindex1_Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)","wt_aaindex1_Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)","wt_aaindex1_Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)","wt_aaindex1_Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)","wt_aaindex1_The Kerr-constant increments (Khanarian-Moore, 1980)","wt_aaindex1_Net charge (Klein et al., 1984)","wt_aaindex1_Side chain interaction parameter (Krigbaum-Rubin, 1971)","wt_aaindex1_Side chain interaction parameter (Krigbaum-Komoriya, 1979)","wt_aaindex1_Fraction of site occupied by water (Krigbaum-Komoriya, 1979)","wt_aaindex1_Side chain volume (Krigbaum-Komoriya, 1979)","wt_aaindex1_Hydropathy index (Kyte-Doolittle, 1982)","wt_aaindex1_Transfer free energy, CHP/water (Lawson et al., 1984)","wt_aaindex1_Hydrophobic parameter (Levitt, 1976)","wt_aaindex1_Distance between C-alpha and centroid of side chain (Levitt, 1976)","wt_aaindex1_Side chain angle theta(AAR) (Levitt, 1976)","wt_aaindex1_Side chain torsion angle phi(AAAR) (Levitt, 1976)","wt_aaindex1_Radius of gyration of side chain (Levitt, 1976)","wt_aaindex1_van der Waals parameter R0 (Levitt, 1976)","wt_aaindex1_van der Waals parameter epsilon (Levitt, 1976)","wt_aaindex1_Normalized frequency of alpha-helix, with weights (Levitt, 1978)","wt_aaindex1_Normalized frequency of beta-sheet, with weights (Levitt, 1978)","wt_aaindex1_Normalized frequency of reverse turn, with weights (Levitt, 1978)","wt_aaindex1_Normalized frequency of alpha-helix, unweighted (Levitt, 1978)","wt_aaindex1_Normalized frequency of beta-sheet, unweighted (Levitt, 1978)","wt_aaindex1_Normalized frequency of reverse turn, unweighted (Levitt, 1978)","wt_aaindex1_Frequency of occurrence in beta-bends (Lewis et al., 1971)","wt_aaindex1_Conformational preference for all beta-strands (Lifson-Sander, 1979)","wt_aaindex1_Conformational preference for parallel beta-strands (Lifson-Sander, 1979)","wt_aaindex1_Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979)","wt_aaindex1_Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978)","wt_aaindex1_Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)","wt_aaindex1_Normalized frequency of extended structure (Maxfield-Scheraga, 1976)","wt_aaindex1_Normalized frequency of zeta R (Maxfield-Scheraga, 1976)","wt_aaindex1_Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)","wt_aaindex1_Normalized frequency of zeta L (Maxfield-Scheraga, 1976)","wt_aaindex1_Normalized frequency of alpha region (Maxfield-Scheraga, 1976)","wt_aaindex1_Refractivity (McMeekin et al., 1964), Cited by Jones (1975)","wt_aaindex1_Retention coefficient in HPLC, pH7.4 (Meek, 1980)","wt_aaindex1_Retention coefficient in HPLC, pH2.1 (Meek, 1980)","wt_aaindex1_Retention coefficient in NaClO4 (Meek-Rossetti, 1981)","wt_aaindex1_Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981)","wt_aaindex1_Average reduced distance for C-alpha (Meirovitch et al., 1980)","wt_aaindex1_Average reduced distance for side chain (Meirovitch et al., 1980)","wt_aaindex1_Average side chain orientation angle (Meirovitch et al., 1980)","wt_aaindex1_Effective partition energy (Miyazawa-Jernigan, 1985)","wt_aaindex1_Normalized frequency of alpha-helix (Nagano, 1973)","wt_aaindex1_Normalized frequency of bata-structure (Nagano, 1973)","wt_aaindex1_Normalized frequency of coil (Nagano, 1973)","wt_aaindex1_AA composition of total proteins (Nakashima et al., 1990)","wt_aaindex1_SD of AA composition of total proteins (Nakashima et al., 1990)","wt_aaindex1_AA composition of mt-proteins (Nakashima et al., 1990)","wt_aaindex1_Normalized composition of mt-proteins (Nakashima et al., 1990)","wt_aaindex1_AA composition of mt-proteins from animal (Nakashima et al., 1990)","wt_aaindex1_Normalized composition from animal (Nakashima et al., 1990)","wt_aaindex1_AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)","wt_aaindex1_Normalized composition from fungi and plant (Nakashima et al., 1990)","wt_aaindex1_AA composition of membrane proteins (Nakashima et al., 1990)","wt_aaindex1_Normalized composition of membrane proteins (Nakashima et al., 1990)","wt_aaindex1_Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)","wt_aaindex1_Transmembrane regions of mt-proteins (Nakashima et al., 1990)","wt_aaindex1_Ratio of average and computed composition (Nakashima et al., 1990)","wt_aaindex1_AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa,","wt_aaindex1_AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa,","wt_aaindex1_AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)","wt_aaindex1_8 A contact number (Nishikawa-Ooi, 1980)","wt_aaindex1_14 A contact number (Nishikawa-Ooi, 1986)","wt_aaindex1_Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)","wt_aaindex1_Average non-bonded energy per atom (Oobatake-Ooi, 1977)","wt_aaindex1_Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)","wt_aaindex1_Long range non-bonded energy per atom (Oobatake-Ooi, 1977)","wt_aaindex1_Average non-bonded energy per residue (Oobatake-Ooi, 1977)","wt_aaindex1_Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)","wt_aaindex1_Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985)","wt_aaindex1_Optimized propensity to form reverse turn (Oobatake et al., 1985)","wt_aaindex1_Optimized transfer energy parameter (Oobatake et al., 1985)","wt_aaindex1_Optimized average non-bonded energy per atom (Oobatake et al., 1985)","wt_aaindex1_Optimized side chain interaction parameter (Oobatake et al., 1985)","wt_aaindex1_Normalized frequency of alpha-helix from LG (Palau et al., 1981)","wt_aaindex1_Normalized frequency of alpha-helix from CF (Palau et al., 1981)","wt_aaindex1_Normalized frequency of beta-sheet from LG (Palau et al., 1981)","wt_aaindex1_Normalized frequency of beta-sheet from CF (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn from LG (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn from CF (Palau et al., 1981)","wt_aaindex1_Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn in all-alpha class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn in all-beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn in alpha+beta class (Palau et al., 1981)","wt_aaindex1_Normalized frequency of turn in alpha/beta class (Palau et al., 1981)","wt_aaindex1_HPLC parameter (Parker et al., 1986)","wt_aaindex1_Partition coefficient (Pliska et al., 1981)","wt_aaindex1_Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980)","wt_aaindex1_Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980)","wt_aaindex1_Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980)","wt_aaindex1_Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980)","wt_aaindex1_Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980)","wt_aaindex1_Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980)","wt_aaindex1_Accessibility reduction ratio (Ponnuswamy et al., 1980)","wt_aaindex1_Average number of surrounding residues (Ponnuswamy et al., 1980)","wt_aaindex1_Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)","wt_aaindex1_Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)","wt_aaindex1_Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)","wt_aaindex1_Hydrophobicity (Prabhakaran, 1990)","wt_aaindex1_Relative frequency in alpha-helix (Prabhakaran, 1990)","wt_aaindex1_Relative frequency in beta-sheet (Prabhakaran, 1990)","wt_aaindex1_Relative frequency in reverse-turn (Prabhakaran, 1990)","wt_aaindex1_Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)","wt_aaindex1_Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)","wt_aaindex1_Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -6 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of -1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 0 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 4 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 5 (Qian-Sejnowski, 1988)","wt_aaindex1_Weights for coil at the window position of 6 (Qian-Sejnowski, 1988)","wt_aaindex1_Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)","wt_aaindex1_Average reduced distance for side chain (Rackovsky-Scheraga, 1977)","wt_aaindex1_Side chain orientational preference (Rackovsky-Scheraga, 1977)","wt_aaindex1_Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Value of theta(i) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Value of theta(i-1) (Rackovsky-Scheraga, 1982)","wt_aaindex1_Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)","wt_aaindex1_Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)","wt_aaindex1_Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)","wt_aaindex1_Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)","wt_aaindex1_Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)","wt_aaindex1_Accessible surface area (Radzicka-Wolfenden, 1988)","wt_aaindex1_Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)","wt_aaindex1_Mean polarity (Radzicka-Wolfenden, 1988)","wt_aaindex1_Relative preference value at N"" (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N' (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N-cap (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N1 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N2 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N3 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N4 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at N5 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at Mid (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C5 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C4 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C3 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C2 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C1 (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C-cap (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C' (Richardson-Richardson, 1988)","wt_aaindex1_Relative preference value at C"" (Richardson-Richardson, 1988)","wt_aaindex1_Information measure for alpha-helix (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for N-terminal helix (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for middle helix (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for C-terminal helix (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for extended (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for pleated-sheet (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for extended without H-bond (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for turn (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for N-terminal turn (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for middle turn (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for C-terminal turn (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for coil (Robson-Suzuki, 1976)","wt_aaindex1_Information measure for loop (Robson-Suzuki, 1976)","wt_aaindex1_Hydration free energy (Robson-Osguthorpe, 1979)","wt_aaindex1_Mean area buried on transfer (Rose et al., 1985)","wt_aaindex1_Mean fractional area loss (Rose et al., 1985)","wt_aaindex1_Side chain hydropathy, uncorrected for solvation (Roseman, 1988)","wt_aaindex1_Side chain hydropathy, corrected for solvation (Roseman, 1988)","wt_aaindex1_Loss of Side chain hydropathy by helix formation (Roseman, 1988)","wt_aaindex1_Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)","wt_aaindex1_Principal component I (Sneath, 1966)","wt_aaindex1_Principal component II (Sneath, 1966)","wt_aaindex1_Principal component III (Sneath, 1966)","wt_aaindex1_Principal component IV (Sneath, 1966)","wt_aaindex1_Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)","wt_aaindex1_Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)","wt_aaindex1_Optimal matching hydrophobicity (Sweet-Eisenberg, 1983)","wt_aaindex1_Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of extended structure (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of zeta R (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of coil (Tanaka-Scheraga, 1977)","wt_aaindex1_Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)","wt_aaindex1_Relative population of conformational state A (Vasquez et al., 1983)","wt_aaindex1_Relative population of conformational state C (Vasquez et al., 1983)","wt_aaindex1_Relative population of conformational state E (Vasquez et al., 1983)","wt_aaindex1_Electron-ion interaction potential (Veljkovic et al., 1985)","wt_aaindex1_Bitterness (Venanzi, 1984)","wt_aaindex1_Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979)","wt_aaindex1_Average interactions per side chain atom (Warme-Morgan, 1978)","wt_aaindex1_RF value in high salt chromatography (Weber-Lacey, 1978)","wt_aaindex1_Propensity to be buried inside (Wertz-Scheraga, 1978)","wt_aaindex1_Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)","wt_aaindex1_Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)","wt_aaindex1_Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)","wt_aaindex1_Polar requirement (Woese, 1973)","wt_aaindex1_Hydration potential (Wolfenden et al., 1981)","wt_aaindex1_Principal property value z1 (Wold et al., 1987)","wt_aaindex1_Principal property value z2 (Wold et al., 1987)","wt_aaindex1_Principal property value z3 (Wold et al., 1987)","wt_aaindex1_Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)","wt_aaindex1_Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)","wt_aaindex1_Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)","wt_aaindex1_Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)","wt_aaindex1_Dependence of partition coefficient on ionic strength (Zaslavsky et al.,","wt_aaindex1_Hydrophobicity (Zimmerman et al., 1968)","wt_aaindex1_Bulkiness (Zimmerman et al., 1968)","wt_aaindex1_Polarity (Zimmerman et al., 1968)","wt_aaindex1_Isoelectric point (Zimmerman et al., 1968)","wt_aaindex1_RF rank (Zimmerman et al., 1968)","wt_aaindex1_Normalized positional residue frequency at helix termini N4'(Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N""' (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N"" (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N'(Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini Nc (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N1 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N2 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N3 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N4 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini N5 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C5 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C4 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C3 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C2 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C1 (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini Cc (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C' (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C"" (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C""' (Aurora-Rose,","wt_aaindex1_Normalized positional residue frequency at helix termini C4' (Aurora-Rose,","wt_aaindex1_Delta G values for the peptides extrapolated to 0 M urea (O'Neil-DeGrado,","wt_aaindex1_Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)","wt_aaindex1_Normalized flexibility parameters (B-values), average (Vihinen et al., 1994)",wt_aaindex1_Normalized flexibility parameters (B-values) for each residue surrounded by,"wt_aaindex1_Free energy in alpha-helical conformation (Munoz-Serrano, 1994)","wt_aaindex1_Free energy in alpha-helical region (Munoz-Serrano, 1994)","wt_aaindex1_Free energy in beta-strand conformation (Munoz-Serrano, 1994)","wt_aaindex1_Free energy in beta-strand region (Munoz-Serrano, 1994)",wt_aaindex1_Free energies of transfer of AcWl-X-LL peptides from bilayer interface to,"wt_aaindex1_Thermodynamic beta sheet propensity (Kim-Berg, 1993)","wt_aaindex1_Turn propensity scale for transmembrane helices (Monne et al., 1999)","wt_aaindex1_Alpha helix propensity of position 44 in T4 lysozyme (Blaber et al., 1993)",wt_aaindex1_p-Values of mesophilic proteins based on the distributions of B values,wt_aaindex1_p-Values of thermophilic proteins based on the distributions of B values,wt_aaindex1_Distribution of amino acid residues in the 18 non-redundant families of,wt_aaindex1_Distribution of amino acid residues in the alpha-helices in thermophilic,wt_aaindex1_Distribution of amino acid residues in the alpha-helices in mesophilic,"wt_aaindex1_Side-chain contribution to protein stability (kJ/mol) (Takano-Yutani, 2001)","wt_aaindex1_Propensity of amino acids within pi-helices (Fodje-Al-Karadaghi, 2002)",wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (5%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (9%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (16%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (20%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (25%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (36%,wt_aaindex1_Hydropathy scale based on self-information values in the two-state model (50%,"wt_aaindex1_Averaged turn propensities in a transmembrane helix (Monne et al., 1999)","wt_aaindex1_Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)","wt_aaindex1_Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)",wt_aaindex1_Composition of amino acids in extracellular proteins (percent) (Cedano et,"wt_aaindex1_Composition of amino acids in anchored proteins (percent) (Cedano et al.,","wt_aaindex1_Composition of amino acids in membrane proteins (percent) (Cedano et al.,",wt_aaindex1_Composition of amino acids in intracellular proteins (percent) (Cedano et,"wt_aaindex1_Composition of amino acids in nuclear proteins (percent) (Cedano et al.,",wt_aaindex1_Surface composition of amino acids in intracellular proteins of thermophiles,wt_aaindex1_Surface composition of amino acids in intracellular proteins of mesophiles,wt_aaindex1_Surface composition of amino acids in extracellular proteins of mesophiles,wt_aaindex1_Surface composition of amino acids in nuclear proteins (percent),wt_aaindex1_Interior composition of amino acids in intracellular proteins of thermophiles,wt_aaindex1_Interior composition of amino acids in intracellular proteins of mesophiles,wt_aaindex1_Interior composition of amino acids in extracellular proteins of mesophiles,wt_aaindex1_Interior composition of amino acids in nuclear proteins (percent),wt_aaindex1_Entire chain composition of amino acids in intracellular proteins of,wt_aaindex1_Entire chain composition of amino acids in extracellular proteins of,wt_aaindex1_Entire chain compositino of amino acids in nuclear proteins (percent),"wt_aaindex1_Screening coefficients gamma, local (Avbelj, 2000)","wt_aaindex1_Screening coefficients gamma, non-local (Avbelj, 2000)","wt_aaindex1_Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)","wt_aaindex1_Slopes tripeptides, LD VFF neutral (Avbelj, 2000)","wt_aaindex1_Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)","wt_aaindex1_Slopes tripeptide FDPB VFF all (Avbelj, 2000)","wt_aaindex1_Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)","wt_aaindex1_Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)","wt_aaindex1_Slopes proteins, FDPB VFF neutral (Avbelj, 2000)","wt_aaindex1_Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)","wt_aaindex1_Amphiphilicity index (Mitaku et al., 2002)","wt_aaindex1_Volumes including the crystallographic waters using the ProtOr (Tsai et al.,",wt_aaindex1_Volumes not including the crystallographic waters using the ProtOr (Tsai et,"wt_aaindex1_Electron-ion interaction potential values (Cosic, 1994)","wt_aaindex1_Hydrophobicity scales (Ponnuswamy, 1993)","wt_aaindex1_Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et","wt_aaindex1_Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al.","wt_aaindex1_Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al.","wt_aaindex1_Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O","wt_aaindex1_Hydrophilicity scale (Kuhn et al., 1995)","wt_aaindex1_Retention coefficient at pH 2 (Guo et al., 1986)","wt_aaindex1_Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)","wt_aaindex1_Interactivity scale obtained from the contact matrix (Bastolla et al., 2005)",wt_aaindex1_Interactivity scale obtained by maximizing the mean of correlation,"wt_aaindex1_Linker propensity index (Suyama-Ohara, 2003)",wt_aaindex1_Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases,wt_aaindex1_Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo databases,"wt_aaindex1_Linker propensity from all dataset (George-Heringa, 2003)","wt_aaindex1_Linker propensity from 1-linker dataset (George-Heringa, 2003)","wt_aaindex1_Linker propensity from 2-linker dataset (George-Heringa, 2003)","wt_aaindex1_Linker propensity from 3-linker dataset (George-Heringa, 2003)",wt_aaindex1_Linker propensity from small dataset (linker length is less than six,wt_aaindex1_Linker propensity from medium dataset (linker length is between six and 14,wt_aaindex1_Linker propensity from long dataset (linker length is greater than 14,"wt_aaindex1_Linker propensity from helical (annotated by DSSP) dataset (George-Heringa,",wt_aaindex1_Linker propensity from non-helical (annotated by DSSP) dataset,"wt_aaindex1_The stability scale from the knowledge-based atom-atom potential (Zhou-Zhou,","wt_aaindex1_The relative stability scale extracted from mutation experiments (Zhou-Zhou,","wt_aaindex1_Buriability (Zhou-Zhou, 2004)","wt_aaindex1_Linker index (Bae et al., 2005)","wt_aaindex1_Mean volumes of residues buried in protein interiors (Harpaz et al., 1994)","wt_aaindex1_Average volumes of residues (Pontius et al., 1996)","wt_aaindex1_Hydrostatic pressure asymmetry index, PAI (Di Giulio, 2005)","wt_aaindex1_Hydrophobicity index (Wolfenden et al., 1979)","wt_aaindex1_Average internal preferences (Olsen, 1980)","wt_aaindex1_Hydrophobicity-related index (Kidera et al., 1985)","wt_aaindex1_Apparent partition energies calculated from Wertz-Scheraga index (Guy, 1985)","wt_aaindex1_Apparent partition energies calculated from Robson-Osguthorpe index (Guy,","wt_aaindex1_Apparent partition energies calculated from Janin index (Guy, 1985)","wt_aaindex1_Apparent partition energies calculated from Chothia index (Guy, 1985)","wt_aaindex1_Hydropathies of amino acid side chains, neutral form (Roseman, 1988)","wt_aaindex1_Hydropathies of amino acid side chains, pi-values in pH 7.0 (Roseman, 1988)","wt_aaindex1_Weights from the IFH scale (Jacobs-White, 1989)","wt_aaindex1_Hydrophobicity index, 3.0 pH (Cowan-Whittaker, 1990)","wt_aaindex1_Scaled side chain hydrophobicity values (Black-Mould, 1991)","wt_aaindex1_Hydrophobicity scale from native protein structures (Casari-Sippl, 1992)","wt_aaindex1_NNEIG index (Cornette et al., 1987)","wt_aaindex1_SWEIG index (Cornette et al., 1987)","wt_aaindex1_PRIFT index (Cornette et al., 1987)","wt_aaindex1_PRILS index (Cornette et al., 1987)","wt_aaindex1_ALTFT index (Cornette et al., 1987)","wt_aaindex1_ALTLS index (Cornette et al., 1987)","wt_aaindex1_TOTFT index (Cornette et al., 1987)","wt_aaindex1_TOTLS index (Cornette et al., 1987)",wt_aaindex1_Relative partition energies derived by the Bethe approximation,"wt_aaindex1_Optimized relative partition energies - method A (Miyazawa-Jernigan, 1999)","wt_aaindex1_Optimized relative partition energies - method B (Miyazawa-Jernigan, 1999)","wt_aaindex1_Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999)","wt_aaindex1_Optimized relative partition energies - method D (Miyazawa-Jernigan, 1999)","wt_aaindex1_Hydrophobicity index (Engelman et al., 1986)","wt_aaindex1_Hydrophobicity index (Fasman, 1989)","wt_aaindex1_Number of vertices (order of the graph) (Karkbara-Knisley, 2016)","wt_aaindex1_Number of edges (size of the graph) (Karkbara-Knisley, 2016)",wt_aaindex1_Total weighted degree of the graph (obtained by adding all the weights of,"wt_aaindex1_Weighted domination number (Karkbara-Knisley, 2016)","wt_aaindex1_Average eccentricity (Karkbara-Knisley, 2016)","wt_aaindex1_Radius (minimum eccentricity) (Karkbara-Knisley, 2016)","wt_aaindex1_Diameter (maximum eccentricity) (Karkbara-Knisley, 2016)","wt_aaindex1_Average weighted degree (total degree, divided by the number of vertices)",wt_aaindex1_Maximum eigenvalue of the weighted Laplacian matrix of the graph,wt_aaindex1_Minimum eigenvalue of the weighted Laplacian matrix of the graph,wt_aaindex1_Average eigenvalue of the Laplacian matrix of the the graph,wt_aaindex1_Second smallest eigenvalue of the Laplacian matrix of the graph,"wt_aaindex1_Weighted domination number using the atomic number (Karkbara-Knisley, 2016)",wt_aaindex1_Average weighted eccentricity based on the the atomic number,wt_aaindex1_Weighted radius based on the atomic number (minimum eccentricity),wt_aaindex1_Weighted diameter based on the atomic number (maximum eccentricity),wt_aaindex1_Total weighted atomic number of the graph (obtained by summing all the atomic,wt_aaindex1_Average weighted atomic number or degree based on atomic number in the graph,wt_aaindex1_Weighted maximum eigenvalue based on the atomic numbers,wt_aaindex1_Weighted minimum eigenvalue based on the atomic numbers,wt_aaindex1_Weighted average eigenvalue based on the atomic numbers,wt_aaindex1_Weighted second smallest eigenvalue of the weighted Laplacian matrix,Diff_NMA_Fluctuation,diff_foldx_total energy,diff_foldx_Backbone Hbond,diff_foldx_Sidechain Hbond,diff_foldx_Van der Waals,diff_foldx_Electrostatics,diff_foldx_Solvation Polar,diff_foldx_Solvation Hydrophobic,diff_foldx_Van der Waals clashes,diff_foldx_entropy sidechain,diff_foldx_entropy mainchain,diff_foldx_sloop_entropy,diff_foldx_mloop_entropy,diff_foldx_cis_bond,diff_foldx_torsional clash,diff_foldx_backbone clash,diff_foldx_helix dipole,diff_foldx_water bridge,diff_foldx_disulfide,diff_foldx_electrostatic kon,diff_foldx_partial covalent bonds,diff_foldx_energy Ionisation,diff_foldx_Entropy Complex,Diff_Num_HBOND_Ring,Diff_Num_SSBOND_Ring,Diff_Num_IONIC_Ring,Diff_Num_VDW_Ring,Diff_Num_PICATION_Ring,Diff_Num_PIPISTACK_Ring,Diff_Num_HBOND_Ring_Layer1,Diff_Num_SSBOND_Ring_Layer1,Diff_Num_IONIC_Ring_Layer1,Diff_Num_VDW_Ring_Layer1,Diff_Num_PICATION_Ring_Layer1,Diff_Num_PIPISTACK_Ring_Layer1,Diff_Num_HBOND_Ring_Layer2,Diff_Num_SSBOND_Ring_Layer2,Diff_Num_IONIC_Ring_Layer2,Diff_Num_VDW_Ring_Layer2,Diff_Num_PICATION_Ring_Layer2,Diff_Num_PIPISTACK_Ring_Layer2,Diff_Num_HBOND_Ring_Layer3,Diff_Num_SSBOND_Ring_Layer3,Diff_Num_IONIC_Ring_Layer3,Diff_Num_VDW_Ring_Layer3,Diff_Num_PICATION_Ring_Layer3,Diff_Num_PIPISTACK_Ring_Layer3,Diff_Num_HD_Cluster_Protlego,Diff_Num_HD_Cluster_Protlego_Layer1,Diff_Num_HD_Cluster_Protlego_Layer2,Diff_Num_HD_Cluster_Protlego_Layer3,Diff_Max_HD_Cluster_Area,diff_num_pharm_c_hb_acceptors,diff_num_pharm_c_hb_donors,diff_num_pharm_c_positives,diff_num_pharm_c_negatives,diff_num_pharm_c_aromatics,diff_num_pharm_c_aliphatics,diff_num_pharm_c_hydrophobics,diff_num_pharm_c_ring,layer1_diff_num_pharm_c_hb_acceptors,layer1_diff_num_pharm_c_hb_donors,layer1_diff_num_pharm_c_positives,layer1_diff_num_pharm_c_negatives,layer1_diff_num_pharm_c_aromatics,layer1_diff_num_pharm_c_aliphatics,layer1_diff_num_pharm_c_hydrophobics,layer1_diff_num_pharm_c_ring,layer2_diff_num_pharm_c_hb_acceptors,layer2_diff_num_pharm_c_hb_donors,layer2_diff_num_pharm_c_positives,layer2_diff_num_pharm_c_negatives,layer2_diff_num_pharm_c_aromatics,layer2_diff_num_pharm_c_aliphatics,layer2_diff_num_pharm_c_hydrophobics,layer2_diff_num_pharm_c_ring,layer3_diff_num_pharm_c_hb_acceptors,layer3_diff_num_pharm_c_hb_donors,layer3_diff_num_pharm_c_positives,layer3_diff_num_pharm_c_negatives,layer3_diff_num_pharm_c_aromatics,layer3_diff_num_pharm_c_aliphatics,layer3_diff_num_pharm_c_hydrophobics,layer3_diff_num_pharm_c_ring,Diff_HD_Cluster_Area,Diff_B_Factor,Diff_Psi,Diff_Phi,Diff_RSA,"diff_aaindex1_alpha-CH chemical shifts (Andersen et al., 1992)","diff_aaindex1_Hydrophobicity index (Argos et al., 1982)","diff_aaindex1_Signal sequence helical potential (Argos et al., 1982)","diff_aaindex1_Membrane-buried preference parameters (Argos et al., 1982)","diff_aaindex1_Conformational parameter of inner helix (Beghin-Dirkx, 1975)","diff_aaindex1_Conformational parameter of beta-structure (Beghin-Dirkx, 1975)","diff_aaindex1_Conformational parameter of beta-turn (Beghin-Dirkx, 1975)","diff_aaindex1_Average flexibility indices (Bhaskaran-Ponnuswamy, 1988)","diff_aaindex1_Residue volume (Bigelow, 1967)","diff_aaindex1_Information value for accessibility; average fraction 35% (Biou et al., 1988)","diff_aaindex1_Information value for accessibility; average fraction 23% (Biou et al., 1988)","diff_aaindex1_Retention coefficient in TFA (Browne et al., 1982)","diff_aaindex1_Retention coefficient in HFBA (Browne et al., 1982)","diff_aaindex1_Transfer free energy to surface (Bull-Breese, 1974)","diff_aaindex1_Apparent partial specific volume (Bull-Breese, 1974)","diff_aaindex1_alpha-NH chemical shifts (Bundi-Wuthrich, 1979)","diff_aaindex1_alpha-CH chemical shifts (Bundi-Wuthrich, 1979)","diff_aaindex1_Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979)","diff_aaindex1_Normalized frequency of alpha-helix (Burgess et al., 1974)","diff_aaindex1_Normalized frequency of extended structure (Burgess et al., 1974)","diff_aaindex1_Steric parameter (Charton, 1981)","diff_aaindex1_Polarizability parameter (Charton-Charton, 1982)","diff_aaindex1_Free energy of solution in water, kcal/mole (Charton-Charton, 1982)","diff_aaindex1_The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983)",diff_aaindex1_A parameter defined from the residuals obtained from the best correlation of,"diff_aaindex1_The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983)","diff_aaindex1_The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983)","diff_aaindex1_The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983)","diff_aaindex1_The number of bonds in the longest chain (Charton-Charton, 1983)","diff_aaindex1_A parameter of charge transfer capability (Charton-Charton, 1983)","diff_aaindex1_A parameter of charge transfer donor capability (Charton-Charton, 1983)","diff_aaindex1_Average volume of buried residue (Chothia, 1975)","diff_aaindex1_Residue accessible surface area in tripeptide (Chothia, 1976)","diff_aaindex1_Residue accessible surface area in folded protein (Chothia, 1976)","diff_aaindex1_Proportion of residues 95% buried (Chothia, 1976)","diff_aaindex1_Proportion of residues 100% buried (Chothia, 1976)","diff_aaindex1_Normalized frequency of beta-turn (Chou-Fasman, 1978a)","diff_aaindex1_Normalized frequency of alpha-helix (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of beta-sheet (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of beta-turn (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of N-terminal helix (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of C-terminal helix (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b)","diff_aaindex1_Frequency of the 1st residue in turn (Chou-Fasman, 1978b)","diff_aaindex1_Frequency of the 2nd residue in turn (Chou-Fasman, 1978b)","diff_aaindex1_Frequency of the 3rd residue in turn (Chou-Fasman, 1978b)","diff_aaindex1_Frequency of the 4th residue in turn (Chou-Fasman, 1978b)","diff_aaindex1_Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b)","diff_aaindex1_Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992)","diff_aaindex1_Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992)","diff_aaindex1_Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992)","diff_aaindex1_Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992)","diff_aaindex1_Normalized average hydrophobicity scales (Cid et al., 1992)","diff_aaindex1_Partial specific volume (Cohn-Edsall, 1943)","diff_aaindex1_Normalized frequency of middle helix (Crawford et al., 1973)","diff_aaindex1_Normalized frequency of beta-sheet (Crawford et al., 1973)","diff_aaindex1_Normalized frequency of turn (Crawford et al., 1973)","diff_aaindex1_Size (Dawson, 1972)","diff_aaindex1_Amino acid composition (Dayhoff et al., 1978a)","diff_aaindex1_Relative mutability (Dayhoff et al., 1978b)","diff_aaindex1_Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990)","diff_aaindex1_Average membrane preference: AMP07 (Degli Esposti et al., 1990)","diff_aaindex1_Consensus normalized hydrophobicity scale (Eisenberg, 1984)","diff_aaindex1_Solvation free energy (Eisenberg-McLachlan, 1986)","diff_aaindex1_Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986)","diff_aaindex1_Direction of hydrophobic moment (Eisenberg-McLachlan, 1986)","diff_aaindex1_Molecular weight (Fasman, 1976)","diff_aaindex1_Melting point (Fasman, 1976)","diff_aaindex1_Optical rotation (Fasman, 1976)","diff_aaindex1_pK-N (Fasman, 1976)","diff_aaindex1_pK-C (Fasman, 1976)","diff_aaindex1_Hydrophobic parameter pi (Fauchere-Pliska, 1983)","diff_aaindex1_Graph shape index (Fauchere et al., 1988)","diff_aaindex1_Smoothed upsilon steric parameter (Fauchere et al., 1988)","diff_aaindex1_Normalized van der Waals volume (Fauchere et al., 1988)","diff_aaindex1_STERIMOL length of the side chain (Fauchere et al., 1988)","diff_aaindex1_STERIMOL minimum width of the side chain (Fauchere et al., 1988)","diff_aaindex1_STERIMOL maximum width of the side chain (Fauchere et al., 1988)","diff_aaindex1_N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988)","diff_aaindex1_Localized electrical effect (Fauchere et al., 1988)","diff_aaindex1_Number of hydrogen bond donors (Fauchere et al., 1988)","diff_aaindex1_Number of full nonbonding orbitals (Fauchere et al., 1988)","diff_aaindex1_Positive charge (Fauchere et al., 1988)","diff_aaindex1_Negative charge (Fauchere et al., 1988)","diff_aaindex1_pK-a(RCOOH) (Fauchere et al., 1988)","diff_aaindex1_Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977)","diff_aaindex1_Helix initiation parameter at posision i-1 (Finkelstein et al., 1991)","diff_aaindex1_Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991)","diff_aaindex1_Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991)","diff_aaindex1_Helix termination parameter at posision j+1 (Finkelstein et al., 1991)","diff_aaindex1_Partition coefficient (Garel et al., 1973)","diff_aaindex1_Alpha-helix indices (Geisow-Roberts, 1980)","diff_aaindex1_Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Beta-strand indices (Geisow-Roberts, 1980)","diff_aaindex1_Beta-strand indices for beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Aperiodic indices (Geisow-Roberts, 1980)","diff_aaindex1_Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Aperiodic indices for beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980)","diff_aaindex1_Hydrophobicity factor (Goldsack-Chalifoux, 1973)","diff_aaindex1_Residue volume (Goldsack-Chalifoux, 1973)","diff_aaindex1_Composition (Grantham, 1974)","diff_aaindex1_Polarity (Grantham, 1974)","diff_aaindex1_Volume (Grantham, 1974)","diff_aaindex1_Partition energy (Guy, 1985)","diff_aaindex1_Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982)","diff_aaindex1_Hydrophilicity value (Hopp-Woods, 1981)","diff_aaindex1_Heat capacity (Hutchens, 1970)","diff_aaindex1_Absolute entropy (Hutchens, 1970)","diff_aaindex1_Entropy of formation (Hutchens, 1970)","diff_aaindex1_Normalized relative frequency of alpha-helix (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of extended structure (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of bend (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of bend R (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of bend S (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of helix end (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of double bend (Isogai et al., 1980)","diff_aaindex1_Normalized relative frequency of coil (Isogai et al., 1980)","diff_aaindex1_Average accessible surface area (Janin et al., 1978)","diff_aaindex1_Percentage of buried residues (Janin et al., 1978)","diff_aaindex1_Percentage of exposed residues (Janin et al., 1978)","diff_aaindex1_Ratio of buried and accessible molar fractions (Janin, 1979)","diff_aaindex1_Transfer free energy (Janin, 1979)","diff_aaindex1_Hydrophobicity (Jones, 1975)","diff_aaindex1_pK (-COOH) (Jones, 1975)","diff_aaindex1_Relative frequency of occurrence (Jones et al., 1992)","diff_aaindex1_Relative mutability (Jones et al., 1992)","diff_aaindex1_Amino acid distribution (Jukes et al., 1975)","diff_aaindex1_Sequence frequency (Jungck, 1978)","diff_aaindex1_Average relative probability of helix (Kanehisa-Tsong, 1980)","diff_aaindex1_Average relative probability of beta-sheet (Kanehisa-Tsong, 1980)","diff_aaindex1_Average relative probability of inner helix (Kanehisa-Tsong, 1980)","diff_aaindex1_Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980)","diff_aaindex1_Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985)","diff_aaindex1_Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985)","diff_aaindex1_Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985)","diff_aaindex1_The Kerr-constant increments (Khanarian-Moore, 1980)","diff_aaindex1_Net charge (Klein et al., 1984)","diff_aaindex1_Side chain interaction parameter (Krigbaum-Rubin, 1971)","diff_aaindex1_Side chain interaction parameter (Krigbaum-Komoriya, 1979)","diff_aaindex1_Fraction of site occupied by water (Krigbaum-Komoriya, 1979)","diff_aaindex1_Side chain volume (Krigbaum-Komoriya, 1979)","diff_aaindex1_Hydropathy index (Kyte-Doolittle, 1982)","diff_aaindex1_Transfer free energy, CHP/water (Lawson et al., 1984)","diff_aaindex1_Hydrophobic parameter (Levitt, 1976)","diff_aaindex1_Distance between C-alpha and centroid of side chain (Levitt, 1976)","diff_aaindex1_Side chain angle theta(AAR) (Levitt, 1976)","diff_aaindex1_Side chain torsion angle phi(AAAR) (Levitt, 1976)","diff_aaindex1_Radius of gyration of side chain (Levitt, 1976)","diff_aaindex1_van der Waals parameter R0 (Levitt, 1976)","diff_aaindex1_van der Waals parameter epsilon (Levitt, 1976)","diff_aaindex1_Normalized frequency of alpha-helix, with weights (Levitt, 1978)","diff_aaindex1_Normalized frequency of beta-sheet, with weights (Levitt, 1978)","diff_aaindex1_Normalized frequency of reverse turn, with weights (Levitt, 1978)","diff_aaindex1_Normalized frequency of alpha-helix, unweighted (Levitt, 1978)","diff_aaindex1_Normalized frequency of beta-sheet, unweighted (Levitt, 1978)","diff_aaindex1_Normalized frequency of reverse turn, unweighted (Levitt, 1978)","diff_aaindex1_Frequency of occurrence in beta-bends (Lewis et al., 1971)","diff_aaindex1_Conformational preference for all beta-strands (Lifson-Sander, 1979)","diff_aaindex1_Conformational preference for parallel beta-strands (Lifson-Sander, 1979)","diff_aaindex1_Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979)","diff_aaindex1_Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978)","diff_aaindex1_Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976)","diff_aaindex1_Normalized frequency of extended structure (Maxfield-Scheraga, 1976)","diff_aaindex1_Normalized frequency of zeta R (Maxfield-Scheraga, 1976)","diff_aaindex1_Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976)","diff_aaindex1_Normalized frequency of zeta L (Maxfield-Scheraga, 1976)","diff_aaindex1_Normalized frequency of alpha region (Maxfield-Scheraga, 1976)","diff_aaindex1_Refractivity (McMeekin et al., 1964), Cited by Jones (1975)","diff_aaindex1_Retention coefficient in HPLC, pH7.4 (Meek, 1980)","diff_aaindex1_Retention coefficient in HPLC, pH2.1 (Meek, 1980)","diff_aaindex1_Retention coefficient in NaClO4 (Meek-Rossetti, 1981)","diff_aaindex1_Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981)","diff_aaindex1_Average reduced distance for C-alpha (Meirovitch et al., 1980)","diff_aaindex1_Average reduced distance for side chain (Meirovitch et al., 1980)","diff_aaindex1_Average side chain orientation angle (Meirovitch et al., 1980)","diff_aaindex1_Effective partition energy (Miyazawa-Jernigan, 1985)","diff_aaindex1_Normalized frequency of alpha-helix (Nagano, 1973)","diff_aaindex1_Normalized frequency of bata-structure (Nagano, 1973)","diff_aaindex1_Normalized frequency of coil (Nagano, 1973)","diff_aaindex1_AA composition of total proteins (Nakashima et al., 1990)","diff_aaindex1_SD of AA composition of total proteins (Nakashima et al., 1990)","diff_aaindex1_AA composition of mt-proteins (Nakashima et al., 1990)","diff_aaindex1_Normalized composition of mt-proteins (Nakashima et al., 1990)","diff_aaindex1_AA composition of mt-proteins from animal (Nakashima et al., 1990)","diff_aaindex1_Normalized composition from animal (Nakashima et al., 1990)","diff_aaindex1_AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990)","diff_aaindex1_Normalized composition from fungi and plant (Nakashima et al., 1990)","diff_aaindex1_AA composition of membrane proteins (Nakashima et al., 1990)","diff_aaindex1_Normalized composition of membrane proteins (Nakashima et al., 1990)","diff_aaindex1_Transmembrane regions of non-mt-proteins (Nakashima et al., 1990)","diff_aaindex1_Transmembrane regions of mt-proteins (Nakashima et al., 1990)","diff_aaindex1_Ratio of average and computed composition (Nakashima et al., 1990)","diff_aaindex1_AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa,","diff_aaindex1_AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa,","diff_aaindex1_AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992)","diff_aaindex1_8 A contact number (Nishikawa-Ooi, 1980)","diff_aaindex1_14 A contact number (Nishikawa-Ooi, 1986)","diff_aaindex1_Transfer energy, organic solvent/water (Nozaki-Tanford, 1971)","diff_aaindex1_Average non-bonded energy per atom (Oobatake-Ooi, 1977)","diff_aaindex1_Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977)","diff_aaindex1_Long range non-bonded energy per atom (Oobatake-Ooi, 1977)","diff_aaindex1_Average non-bonded energy per residue (Oobatake-Ooi, 1977)","diff_aaindex1_Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977)","diff_aaindex1_Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985)","diff_aaindex1_Optimized propensity to form reverse turn (Oobatake et al., 1985)","diff_aaindex1_Optimized transfer energy parameter (Oobatake et al., 1985)","diff_aaindex1_Optimized average non-bonded energy per atom (Oobatake et al., 1985)","diff_aaindex1_Optimized side chain interaction parameter (Oobatake et al., 1985)","diff_aaindex1_Normalized frequency of alpha-helix from LG (Palau et al., 1981)","diff_aaindex1_Normalized frequency of alpha-helix from CF (Palau et al., 1981)","diff_aaindex1_Normalized frequency of beta-sheet from LG (Palau et al., 1981)","diff_aaindex1_Normalized frequency of beta-sheet from CF (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn from LG (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn from CF (Palau et al., 1981)","diff_aaindex1_Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn in all-alpha class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn in all-beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn in alpha+beta class (Palau et al., 1981)","diff_aaindex1_Normalized frequency of turn in alpha/beta class (Palau et al., 1981)","diff_aaindex1_HPLC parameter (Parker et al., 1986)","diff_aaindex1_Partition coefficient (Pliska et al., 1981)","diff_aaindex1_Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980)","diff_aaindex1_Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980)","diff_aaindex1_Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980)","diff_aaindex1_Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980)","diff_aaindex1_Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980)","diff_aaindex1_Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980)","diff_aaindex1_Accessibility reduction ratio (Ponnuswamy et al., 1980)","diff_aaindex1_Average number of surrounding residues (Ponnuswamy et al., 1980)","diff_aaindex1_Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982)","diff_aaindex1_Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982)","diff_aaindex1_Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982)","diff_aaindex1_Hydrophobicity (Prabhakaran, 1990)","diff_aaindex1_Relative frequency in alpha-helix (Prabhakaran, 1990)","diff_aaindex1_Relative frequency in beta-sheet (Prabhakaran, 1990)","diff_aaindex1_Relative frequency in reverse-turn (Prabhakaran, 1990)","diff_aaindex1_Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)","diff_aaindex1_Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983)","diff_aaindex1_Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -6 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of -1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 0 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 1 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 2 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 3 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 4 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 5 (Qian-Sejnowski, 1988)","diff_aaindex1_Weights for coil at the window position of 6 (Qian-Sejnowski, 1988)","diff_aaindex1_Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977)","diff_aaindex1_Average reduced distance for side chain (Rackovsky-Scheraga, 1977)","diff_aaindex1_Side chain orientational preference (Rackovsky-Scheraga, 1977)","diff_aaindex1_Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Value of theta(i) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Value of theta(i-1) (Rackovsky-Scheraga, 1982)","diff_aaindex1_Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988)","diff_aaindex1_Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988)","diff_aaindex1_Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988)","diff_aaindex1_Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988)","diff_aaindex1_Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988)","diff_aaindex1_Accessible surface area (Radzicka-Wolfenden, 1988)","diff_aaindex1_Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988)","diff_aaindex1_Mean polarity (Radzicka-Wolfenden, 1988)","diff_aaindex1_Relative preference value at N"" (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N' (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N-cap (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N1 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N2 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N3 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N4 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at N5 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at Mid (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C5 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C4 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C3 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C2 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C1 (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C-cap (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C' (Richardson-Richardson, 1988)","diff_aaindex1_Relative preference value at C"" (Richardson-Richardson, 1988)","diff_aaindex1_Information measure for alpha-helix (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for N-terminal helix (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for middle helix (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for C-terminal helix (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for extended (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for pleated-sheet (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for extended without H-bond (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for turn (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for N-terminal turn (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for middle turn (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for C-terminal turn (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for coil (Robson-Suzuki, 1976)","diff_aaindex1_Information measure for loop (Robson-Suzuki, 1976)","diff_aaindex1_Hydration free energy (Robson-Osguthorpe, 1979)","diff_aaindex1_Mean area buried on transfer (Rose et al., 1985)","diff_aaindex1_Mean fractional area loss (Rose et al., 1985)","diff_aaindex1_Side chain hydropathy, uncorrected for solvation (Roseman, 1988)","diff_aaindex1_Side chain hydropathy, corrected for solvation (Roseman, 1988)","diff_aaindex1_Loss of Side chain hydropathy by helix formation (Roseman, 1988)","diff_aaindex1_Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982)","diff_aaindex1_Principal component I (Sneath, 1966)","diff_aaindex1_Principal component II (Sneath, 1966)","diff_aaindex1_Principal component III (Sneath, 1966)","diff_aaindex1_Principal component IV (Sneath, 1966)","diff_aaindex1_Zimm-Bragg parameter s at 20 C (Sueki et al., 1984)","diff_aaindex1_Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984)","diff_aaindex1_Optimal matching hydrophobicity (Sweet-Eisenberg, 1983)","diff_aaindex1_Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of isolated helix (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of extended structure (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of zeta R (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of coil (Tanaka-Scheraga, 1977)","diff_aaindex1_Normalized frequency of chain reversal (Tanaka-Scheraga, 1977)","diff_aaindex1_Relative population of conformational state A (Vasquez et al., 1983)","diff_aaindex1_Relative population of conformational state C (Vasquez et al., 1983)","diff_aaindex1_Relative population of conformational state E (Vasquez et al., 1983)","diff_aaindex1_Electron-ion interaction potential (Veljkovic et al., 1985)","diff_aaindex1_Bitterness (Venanzi, 1984)","diff_aaindex1_Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979)","diff_aaindex1_Average interactions per side chain atom (Warme-Morgan, 1978)","diff_aaindex1_RF value in high salt chromatography (Weber-Lacey, 1978)","diff_aaindex1_Propensity to be buried inside (Wertz-Scheraga, 1978)","diff_aaindex1_Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978)","diff_aaindex1_Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978)","diff_aaindex1_Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978)","diff_aaindex1_Polar requirement (Woese, 1973)","diff_aaindex1_Hydration potential (Wolfenden et al., 1981)","diff_aaindex1_Principal property value z1 (Wold et al., 1987)","diff_aaindex1_Principal property value z2 (Wold et al., 1987)","diff_aaindex1_Principal property value z3 (Wold et al., 1987)","diff_aaindex1_Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987)","diff_aaindex1_Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987)","diff_aaindex1_Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987)","diff_aaindex1_Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987)","diff_aaindex1_Dependence of partition coefficient on ionic strength (Zaslavsky et al.,","diff_aaindex1_Hydrophobicity (Zimmerman et al., 1968)","diff_aaindex1_Bulkiness (Zimmerman et al., 1968)","diff_aaindex1_Polarity (Zimmerman et al., 1968)","diff_aaindex1_Isoelectric point (Zimmerman et al., 1968)","diff_aaindex1_RF rank (Zimmerman et al., 1968)","diff_aaindex1_Normalized positional residue frequency at helix termini N4'(Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N""' (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N"" (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N'(Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini Nc (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N1 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N2 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N3 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N4 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini N5 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C5 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C4 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C3 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C2 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C1 (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini Cc (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C' (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C"" (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C""' (Aurora-Rose,","diff_aaindex1_Normalized positional residue frequency at helix termini C4' (Aurora-Rose,","diff_aaindex1_Delta G values for the peptides extrapolated to 0 M urea (O'Neil-DeGrado,","diff_aaindex1_Helix formation parameters (delta delta G) (O'Neil-DeGrado, 1990)","diff_aaindex1_Normalized flexibility parameters (B-values), average (Vihinen et al., 1994)",diff_aaindex1_Normalized flexibility parameters (B-values) for each residue surrounded by,"diff_aaindex1_Free energy in alpha-helical conformation (Munoz-Serrano, 1994)","diff_aaindex1_Free energy in alpha-helical region (Munoz-Serrano, 1994)","diff_aaindex1_Free energy in beta-strand conformation (Munoz-Serrano, 1994)","diff_aaindex1_Free energy in beta-strand region (Munoz-Serrano, 1994)",diff_aaindex1_Free energies of transfer of AcWl-X-LL peptides from bilayer interface to,"diff_aaindex1_Thermodynamic beta sheet propensity (Kim-Berg, 1993)","diff_aaindex1_Turn propensity scale for transmembrane helices (Monne et al., 1999)","diff_aaindex1_Alpha helix propensity of position 44 in T4 lysozyme (Blaber et al., 1993)",diff_aaindex1_p-Values of mesophilic proteins based on the distributions of B values,diff_aaindex1_p-Values of thermophilic proteins based on the distributions of B values,diff_aaindex1_Distribution of amino acid residues in the 18 non-redundant families of,diff_aaindex1_Distribution of amino acid residues in the alpha-helices in thermophilic,diff_aaindex1_Distribution of amino acid residues in the alpha-helices in mesophilic,"diff_aaindex1_Side-chain contribution to protein stability (kJ/mol) (Takano-Yutani, 2001)","diff_aaindex1_Propensity of amino acids within pi-helices (Fodje-Al-Karadaghi, 2002)",diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (5%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (9%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (16%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (20%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (25%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (36%,diff_aaindex1_Hydropathy scale based on self-information values in the two-state model (50%,"diff_aaindex1_Averaged turn propensities in a transmembrane helix (Monne et al., 1999)","diff_aaindex1_Alpha-helix propensity derived from designed sequences (Koehl-Levitt, 1999)","diff_aaindex1_Beta-sheet propensity derived from designed sequences (Koehl-Levitt, 1999)",diff_aaindex1_Composition of amino acids in extracellular proteins (percent) (Cedano et,"diff_aaindex1_Composition of amino acids in anchored proteins (percent) (Cedano et al.,","diff_aaindex1_Composition of amino acids in membrane proteins (percent) (Cedano et al.,",diff_aaindex1_Composition of amino acids in intracellular proteins (percent) (Cedano et,"diff_aaindex1_Composition of amino acids in nuclear proteins (percent) (Cedano et al.,",diff_aaindex1_Surface composition of amino acids in intracellular proteins of thermophiles,diff_aaindex1_Surface composition of amino acids in intracellular proteins of mesophiles,diff_aaindex1_Surface composition of amino acids in extracellular proteins of mesophiles,diff_aaindex1_Surface composition of amino acids in nuclear proteins (percent),diff_aaindex1_Interior composition of amino acids in intracellular proteins of thermophiles,diff_aaindex1_Interior composition of amino acids in intracellular proteins of mesophiles,diff_aaindex1_Interior composition of amino acids in extracellular proteins of mesophiles,diff_aaindex1_Interior composition of amino acids in nuclear proteins (percent),diff_aaindex1_Entire chain composition of amino acids in intracellular proteins of,diff_aaindex1_Entire chain composition of amino acids in extracellular proteins of,diff_aaindex1_Entire chain compositino of amino acids in nuclear proteins (percent),"diff_aaindex1_Screening coefficients gamma, local (Avbelj, 2000)","diff_aaindex1_Screening coefficients gamma, non-local (Avbelj, 2000)","diff_aaindex1_Slopes tripeptide, FDPB VFF neutral (Avbelj, 2000)","diff_aaindex1_Slopes tripeptides, LD VFF neutral (Avbelj, 2000)","diff_aaindex1_Slopes tripeptide, FDPB VFF noside (Avbelj, 2000)","diff_aaindex1_Slopes tripeptide FDPB VFF all (Avbelj, 2000)","diff_aaindex1_Slopes tripeptide FDPB PARSE neutral (Avbelj, 2000)","diff_aaindex1_Slopes dekapeptide, FDPB VFF neutral (Avbelj, 2000)","diff_aaindex1_Slopes proteins, FDPB VFF neutral (Avbelj, 2000)","diff_aaindex1_Side-chain conformation by gaussian evolutionary method (Yang et al., 2002)","diff_aaindex1_Amphiphilicity index (Mitaku et al., 2002)","diff_aaindex1_Volumes including the crystallographic waters using the ProtOr (Tsai et al.,",diff_aaindex1_Volumes not including the crystallographic waters using the ProtOr (Tsai et,"diff_aaindex1_Electron-ion interaction potential values (Cosic, 1994)","diff_aaindex1_Hydrophobicity scales (Ponnuswamy, 1993)","diff_aaindex1_Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/MeCN/H2O (Wilce et","diff_aaindex1_Hydrophobicity coefficient in RP-HPLC, C8 with 0.1%TFA/MeCN/H2O (Wilce et al.","diff_aaindex1_Hydrophobicity coefficient in RP-HPLC, C4 with 0.1%TFA/MeCN/H2O (Wilce et al.","diff_aaindex1_Hydrophobicity coefficient in RP-HPLC, C18 with 0.1%TFA/2-PrOH/MeCN/H2O","diff_aaindex1_Hydrophilicity scale (Kuhn et al., 1995)","diff_aaindex1_Retention coefficient at pH 2 (Guo et al., 1986)","diff_aaindex1_Modified Kyte-Doolittle hydrophobicity scale (Juretic et al., 1998)","diff_aaindex1_Interactivity scale obtained from the contact matrix (Bastolla et al., 2005)",diff_aaindex1_Interactivity scale obtained by maximizing the mean of correlation,"diff_aaindex1_Linker propensity index (Suyama-Ohara, 2003)",diff_aaindex1_Knowledge-based membrane-propensity scale from 1D_Helix in MPtopo databases,diff_aaindex1_Knowledge-based membrane-propensity scale from 3D_Helix in MPtopo databases,"diff_aaindex1_Linker propensity from all dataset (George-Heringa, 2003)","diff_aaindex1_Linker propensity from 1-linker dataset (George-Heringa, 2003)","diff_aaindex1_Linker propensity from 2-linker dataset (George-Heringa, 2003)","diff_aaindex1_Linker propensity from 3-linker dataset (George-Heringa, 2003)",diff_aaindex1_Linker propensity from small dataset (linker length is less than six,diff_aaindex1_Linker propensity from medium dataset (linker length is between six and 14,diff_aaindex1_Linker propensity from long dataset (linker length is greater than 14,"diff_aaindex1_Linker propensity from helical (annotated by DSSP) dataset (George-Heringa,",diff_aaindex1_Linker propensity from non-helical (annotated by DSSP) dataset,"diff_aaindex1_The stability scale from the knowledge-based atom-atom potential (Zhou-Zhou,","diff_aaindex1_The relative stability scale extracted from mutation experiments (Zhou-Zhou,","diff_aaindex1_Buriability (Zhou-Zhou, 2004)","diff_aaindex1_Linker index (Bae et al., 2005)","diff_aaindex1_Mean volumes of residues buried in protein interiors (Harpaz et al., 1994)","diff_aaindex1_Average volumes of residues (Pontius et al., 1996)","diff_aaindex1_Hydrostatic pressure asymmetry index, PAI (Di Giulio, 2005)","diff_aaindex1_Hydrophobicity index (Wolfenden et al., 1979)","diff_aaindex1_Average internal preferences (Olsen, 1980)","diff_aaindex1_Hydrophobicity-related index (Kidera et al., 1985)","diff_aaindex1_Apparent partition energies calculated from Wertz-Scheraga index (Guy, 1985)","diff_aaindex1_Apparent partition energies calculated from Robson-Osguthorpe index (Guy,","diff_aaindex1_Apparent partition energies calculated from Janin index (Guy, 1985)","diff_aaindex1_Apparent partition energies calculated from Chothia index (Guy, 1985)","diff_aaindex1_Hydropathies of amino acid side chains, neutral form (Roseman, 1988)","diff_aaindex1_Hydropathies of amino acid side chains, pi-values in pH 7.0 (Roseman, 1988)","diff_aaindex1_Weights from the IFH scale (Jacobs-White, 1989)","diff_aaindex1_Hydrophobicity index, 3.0 pH (Cowan-Whittaker, 1990)","diff_aaindex1_Scaled side chain hydrophobicity values (Black-Mould, 1991)","diff_aaindex1_Hydrophobicity scale from native protein structures (Casari-Sippl, 1992)","diff_aaindex1_NNEIG index (Cornette et al., 1987)","diff_aaindex1_SWEIG index (Cornette et al., 1987)","diff_aaindex1_PRIFT index (Cornette et al., 1987)","diff_aaindex1_PRILS index (Cornette et al., 1987)","diff_aaindex1_ALTFT index (Cornette et al., 1987)","diff_aaindex1_ALTLS index (Cornette et al., 1987)","diff_aaindex1_TOTFT index (Cornette et al., 1987)","diff_aaindex1_TOTLS index (Cornette et al., 1987)",diff_aaindex1_Relative partition energies derived by the Bethe approximation,"diff_aaindex1_Optimized relative partition energies - method A (Miyazawa-Jernigan, 1999)","diff_aaindex1_Optimized relative partition energies - method B (Miyazawa-Jernigan, 1999)","diff_aaindex1_Optimized relative partition energies - method C (Miyazawa-Jernigan, 1999)","diff_aaindex1_Optimized relative partition energies - method D (Miyazawa-Jernigan, 1999)","diff_aaindex1_Hydrophobicity index (Engelman et al., 1986)","diff_aaindex1_Hydrophobicity index (Fasman, 1989)","diff_aaindex1_Number of vertices (order of the graph) (Karkbara-Knisley, 2016)","diff_aaindex1_Number of edges (size of the graph) (Karkbara-Knisley, 2016)",diff_aaindex1_Total weighted degree of the graph (obtained by adding all the weights of,"diff_aaindex1_Weighted domination number (Karkbara-Knisley, 2016)","diff_aaindex1_Average eccentricity (Karkbara-Knisley, 2016)","diff_aaindex1_Radius (minimum eccentricity) (Karkbara-Knisley, 2016)","diff_aaindex1_Diameter (maximum eccentricity) (Karkbara-Knisley, 2016)","diff_aaindex1_Average weighted degree (total degree, divided by the number of vertices)",diff_aaindex1_Maximum eigenvalue of the weighted Laplacian matrix of the graph,diff_aaindex1_Minimum eigenvalue of the weighted Laplacian matrix of the graph,diff_aaindex1_Average eigenvalue of the Laplacian matrix of the the graph,diff_aaindex1_Second smallest eigenvalue of the Laplacian matrix of the graph,"diff_aaindex1_Weighted domination number using the atomic number (Karkbara-Knisley, 2016)",diff_aaindex1_Average weighted eccentricity based on the the atomic number,diff_aaindex1_Weighted radius based on the atomic number (minimum eccentricity),diff_aaindex1_Weighted diameter based on the atomic number (maximum eccentricity),diff_aaindex1_Total weighted atomic number of the graph (obtained by summing all the atomic,diff_aaindex1_Average weighted atomic number or degree based on atomic number in the graph,diff_aaindex1_Weighted maximum eigenvalue based on the atomic numbers,diff_aaindex1_Weighted minimum eigenvalue based on the atomic numbers,diff_aaindex1_Weighted average eigenvalue based on the atomic numbers,diff_aaindex1_Weighted second smallest eigenvalue of the weighted Laplacian matrix,Descri_HBOND,Descri_SSBOND,Descri_IONIC,Descri_VDW,Descri_PICATION,Descri_PIPISTACK,Descri_HD_Cluster,SIFT_Score,Descri_Buried_or_Exposed,Descri_SS,Descri_AA,Descri_Uncharged_Polar,Descri_Positively_Charged_Polar,Descri_Negatively_Charged_Polar,Descri_Nonpolar,Descri_Aliphatic,Descri_Aromatic,Descri_Heterocyclic,Descri_Sulfur_Containing,"descri_aaindex2_The PAM-120 matrix (Altschul, 1991)","descri_aaindex2_Log-odds scoring matrix collected in 6.4-8.7 PAM (Benner et al., 1994)","descri_aaindex2_Log-odds scoring matrix collected in 22-29 PAM (Benner et al., 1994)","descri_aaindex2_Log-odds scoring matrix collected in 74-100 PAM (Benner et al., 1994)","descri_aaindex2_Genetic code matrix (Benner et al., 1994)","descri_aaindex2_Residue replace ability matrix (Cserzo et al., 1994)","descri_aaindex2_Log odds matrix for 250 PAMs (Dayhoff et al., 1978)","descri_aaindex2_Structure-Genetic matrix (Feng et al., 1985)","descri_aaindex2_Mutation values for the interconversion of amino acid pairs (Fitch, 1966)","descri_aaindex2_Hydrophobicity scoring matrix (George et al., 1990)","descri_aaindex2_The mutation matrix for initially aligning (Gonnet et al., 1992)","descri_aaindex2_Chemical distance (Grantham, 1974)","descri_aaindex2_BLOSUM45 substitution matrix (Henikoff-Henikoff, 1992)","descri_aaindex2_BLOSUM62 substitution matrix (Henikoff-Henikoff, 1992)","descri_aaindex2_BLOSUM80 substitution matrix (Henikoff-Henikoff, 1992)","descri_aaindex2_Structure-based amino acid scoring table (Johnson-Overington, 1993)","descri_aaindex2_The 250 PAM PET91 matrix (Jones et al., 1992)","descri_aaindex2_The 250 PAM transmembrane protein exchange matrix (Jones et al., 1994)","descri_aaindex2_Conformational similarity weight matrix (Kolaskar-Kulkarni-Kale, 1992)","descri_aaindex2_The secondary structure similarity matrix (Levin et al., 1986)","descri_aaindex2_Structure-based comparison table for outside other class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for inside other class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for outside alpha class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for inside alpha class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for outside beta class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for inside beta class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for other class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for alpha helix class (Luthy et al., 1991)","descri_aaindex2_Structure-based comparison table for beta strand class (Luthy et al., 1991)","descri_aaindex2_The similarity of pairs of amino acids (McLachlan, 1971)","descri_aaindex2_Chemical similarity scores (McLachlan, 1972)","descri_aaindex2_Base-substitution-protein-stability matrix (Miyazawa-Jernigan, 1993)","descri_aaindex2_Amino acid pair distance (Miyata et al., 1979)","descri_aaindex2_EMPAR matrix (Mohana Rao, 1987)","descri_aaindex2_Structure-derived correlation matrix 1 (Niefind-Schomburg, 1991)","descri_aaindex2_Structure-derived correlation matrix 2 (Niefind-Schomburg, 1991)","descri_aaindex2_STR matrix from structure-based alignments (Overington et al., 1992)",descri_aaindex2_Cross-correlation coefficients of preference factors,"descri_aaindex2_The mutant distance based on spatial preference factor (Qu et al., 1993)","descri_aaindex2_Scoring matrix (Risler et al., 1988)","descri_aaindex2_isomorphicity of replacements (Tudos et al., 1990)",descri_aaindex2_The single residue substitution matrix from interchanges of,descri_aaindex2_The substitution matrix derived from spatially conserved motifs,"descri_aaindex2_Hydrophobicity scoring matrix (Riek et al., 1995)","descri_aaindex2_WAC matrix constructed from amino acid comparative profiles (Wei et al., 1997)",descri_aaindex2_Difference matrix obtained by subtracting the BLOSUM62 from the WAC,"descri_aaindex2_(Mehta et al., 1995)","descri_aaindex2_(Kapp et al., 1995)","descri_aaindex2_(Vogt et al., 1995)",descri_aaindex2_Context-dependent optimal substitution matrices for exposed helix,descri_aaindex2_Context-dependent optimal substitution matrices for exposed beta,descri_aaindex2_Context-dependent optimal substitution matrices for exposed turn,descri_aaindex2_Context-dependent optimal substitution matrices for exposed coil,descri_aaindex2_Context-dependent optimal substitution matrices for buried helix,descri_aaindex2_Context-dependent optimal substitution matrices for buried beta,descri_aaindex2_Context-dependent optimal substitution matrices for buried turn,descri_aaindex2_Context-dependent optimal substitution matrices for buried coil,descri_aaindex2_Context-dependent optimal substitution matrices for alpha helix,descri_aaindex2_Context-dependent optimal substitution matrices for beta sheet,descri_aaindex2_Context-dependent optimal substitution matrices for turn,descri_aaindex2_Context-dependent optimal substitution matrices for coil,descri_aaindex2_Context-dependent optimal substitution matrices for exposed residues,descri_aaindex2_Context-dependent optimal substitution matrices for buried residues,descri_aaindex2_Context-dependent optimal substitution matrices for all residues,"descri_aaindex2_Substitution matrices from an neural network model (Lin et al., 2001)",descri_aaindex2_Matrix built from structural superposition data for identifying potential,descri_aaindex2_Structure derived matrix (SDM) for alignment of distantly related sequences,descri_aaindex2_Homologous structure dereived matrix (HSDM) for alignment of distantly,descri_aaindex2_Amino acid similarity matrix based on the sausage force,"descri_aaindex2_Normalised version of SM_SAUSAGE (Dosztanyi-Torda, 2001)",descri_aaindex2_An amino acid similarity matrix based on the THREADER force field,"descri_aaindex2_Normalised version of SM_THREADER (Dosztanyi-Torda, 2001)",descri_aaindex2_Residue substitutions matrix from thermo/mesophilic to psychrophilic,"descri_aaindex2_Log odds matrix for 40 PAMs (Dayhoff et al., 1978)","descri_aaindex2_BLOSUM50 substitution matrix (Henikoff-Henikoff, 1992)",descri_aaindex2_STROMA score matrix for the alignment of known distant homologs,descri_aaindex2_Substitution matrix derived from the single residue interchanges at spatially,descri_aaindex2_Substitution matrix based on structural alignments of analogous proteins,descri_aaindex2_Substitution matrix based on structural alignments of remote homolous proteins,descri_aaindex2_Substitution matrix based on structural alignments of analogous and remote homolous,descri_aaindex2_Substitution matrix derived from structural alignments by maximizing entropy,descri_aaindex2_Substitution matrix (OPTIMA) derived by maximizing discrimination between,descri_aaindex2_Substitution matrix (PHAT) built from hydrophobic and transmembrane regions,descri_aaindex2_Non-symmetric substitution matrix (SLIM) for detection of homologous,descri_aaindex2_Substitution matrix (VTML160) obtained by maximum likelihood estimation,descri_aaindex2_Substitution matrix (VTML250) obtained by maximum likelihood estimation,descri_aaindex2_Substitution matrix computed from the Dirichlet Mixture Model,descri_aaindex3_Statistical contact potential derived from 25 x-ray protein structures,descri_aaindex3_Number of contacts between side chains derived from 25 x-ray protein structures,descri_aaindex3_Interaction energies derived from side chain contacts in the interiors of,descri_aaindex3_Distance-dependent statistical potential (only energies of contacts within,descri_aaindex3_Mixed quasichemical and optimization-based protein contact potential,descri_aaindex3_Statistical potential derived by the maximization of the harmonic mean of Z,descri_aaindex3_Statistical potential derived by the maximization of the perceptron criterion,descri_aaindex3_Optimization-based potential derived by the modified perceptron criterion,descri_aaindex3_Quasichemical energy of transfer of amino acids from water to the protein,descri_aaindex3_Quasichemical energy of interactions in an average buried environment,descri_aaindex3_Number of contacts between side chains derived from 1168 x-ray protein,descri_aaindex3_Modified version of the Miyazawa-Jernigan transfer energy,descri_aaindex3_Quasichemical transfer energy derived from interfacial regions of,descri_aaindex3_Quasichemical energy in an average protein environment derived from interfacial,descri_aaindex3_Quasichemical potential derived from interfacial regions of protein-protein,descri_aaindex3_Optimization-derived potential obtained for small set of decoys,descri_aaindex3_Optimization-derived potential obtained for large set of decoys,descri_aaindex3_Statistical contact potential derived by the quasichemical approximation,descri_aaindex3_Statistical potential derived by the quasichemical approximation,descri_aaindex3_Quasichemical statistical potential derived from buried contacts,descri_aaindex3_Statistical quasichemical potential with the partially composition-corrected,descri_aaindex3_Statistical quasichemical potential with the composition-corrected pair scale,descri_aaindex3_Quasichemical statistical potential for the antiparallel orientation of,descri_aaindex3_Quasichemical statistical potential for the intermediate orientation of,descri_aaindex3_Quasichemical statistical potential for the parallel orientation of interacting,descri_aaindex3_Distances between centers of interacting side chains in the antiparallel,descri_aaindex3_Distances between centers of interacting side chains in the intermediate,descri_aaindex3_Distances between centers of interacting side chains in the parallel,descri_aaindex3_Optimization-derived potential,descri_aaindex3_Distance-dependent statistical potential (contacts within 0-5 Angstrooms),descri_aaindex3_Distance-dependent statistical potential (contacts within 5-7.5 Angstrooms),descri_aaindex3_Distance-dependent statistical potential (contacts within 7.5-10 Angstrooms),descri_aaindex3_Distance-dependent statistical potential (contacts within 10-12 Angstrooms),descri_aaindex3_Distance-dependent statistical potential (contacts longer than 12 Angstrooms),"descri_aaindex3_Environment-dependent residue contact energies (rows = helix, cols = helix)","descri_aaindex3_Environment-dependent residue contact energies (rows = helix, cols = strand)","descri_aaindex3_Environment-dependent residue contact energies (rows = helix, cols = coil)","descri_aaindex3_Environment-dependent residue contact energies (rows = strand, cols = strand)","descri_aaindex3_Environment-dependent residue contact energies (rows = strand, cols = coil)","descri_aaindex3_Environment-dependent residue contact energies (rows = coil, cols = coil)",WT_PSSM_Score,MUT_PSSM_Score,WT_PSSM_Score_F1,WT_PSSM_Score_F2,WT_PSSM_Score_F3,WT_PSSM_Score_F4,WT_PSSM_Score_F5,WT_PSSM_Score_B1,WT_PSSM_Score_B2,WT_PSSM_Score_B3,WT_PSSM_Score_B4,WT_PSSM_Score_B5,WT_PSSM_Score_Aver,MUT_PSSM_Score_F1,MUT_PSSM_Score_F2,MUT_PSSM_Score_F3,MUT_PSSM_Score_F4,MUT_PSSM_Score_F5,MUT_PSSM_Score_B1,MUT_PSSM_Score_B2,MUT_PSSM_Score_B3,MUT_PSSM_Score_B4,MUT_PSSM_Score_B5,MUT_PSSM_Score_Aver,Diff_PSSM_Score,Diff_PSSM_Score_Aver,Experimental_DDG,Experimental_DDG_Classification
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