# >>>> INPUT FILE FOR MC-GPU v1.3 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
#
#   Sample simulation using a simple geometry composed of 3x1x2=6 uniform voxels.
#   Voxels bounding box:  30x10x30 cm^3.
#
#                  @file    MC-GPU_v1.3_6voxels.in
#                  @author  Andreu Badal (Andreu.Badal-Soler{at}fda.hhs.gov)
#                  @date    2012/12/12
#

#[SECTION SIMULATION CONFIG v.2009-05-12]
1.0e9                          # TOTAL NUMBER OF HISTORIES, OR SIMULATION TIME IN SECONDS IF VALUE < 100000
271828182                       # RANDOM SEED (ranecu PRNG)
0                               # GPU NUMBER TO USE WHEN MPI IS NOT USED, OR TO BE AVOIDED IN MPI RUNS
128                             # GPU THREADS PER CUDA BLOCK (multiple of 32)
100                             # SIMULATED HISTORIES PER GPU THREAD

#[SECTION SOURCE v.2011-07-12]
120kVp_4.3mmAl.spc                       # X-RAY ENERGY SPECTRUM FILE
7.2105 -48.8565  13.252025             # SOURCE POSITION: X Y Z [cm]
0.0    1.0   0.0                # SOURCE DIRECTION COSINES: U V W
-42.0  -39.0                      # POLAR AND AZIMUTHAL APERTURES FOR THE FAN BEAM [degrees] (input negative to automatically cover the whole detector)

#[SECTION IMAGE DETECTOR v.2009-12-02]
/wrk/MCGPU/XCAT_uus/mc-gpu_XCAT_uusTenth.dat                # OUTPUT IMAGE FILE NAME
1426    1426                      # NUMBER OF PIXELS IN THE IMAGE: Nx Nz
42.5056   42.5056                    # IMAGE SIZE (width, height): Dx Dz [cm]
108.6                           # SOURCE-TO-DETECTOR DISTANCE (detector set in front of the source, perpendicular to the initial direction)

#[SECTION CT SCAN TRAJECTORY v.2011-10-25]
500                               # NUMBER OF PROJECTIONS (beam must be perpendicular to Z axis, set to 1 for a single projection)
0.72                             # ANGLE BETWEEN PROJECTIONS [degrees] (360/num_projections for full CT)
0.0  3600.0                     # ANGLES OF INTEREST (projections outside the input interval will be skipped)
60.0                            # SOURCE-TO-ROTATION AXIS DISTANCE (rotation radius, axis parallel to Z)
 0.0                            # VERTICAL TRANSLATION BETWEEN PROJECTIONS (HELICAL SCAN)

#[SECTION DOSE DEPOSITION v.2012-12-12]
NO                             # TALLY MATERIAL DOSE? [YES/NO] (electrons not transported, x-ray energy locally deposited at interaction)
NO                             # TALLY 3D VOXEL DOSE? [YES/NO] (dose measured separately for each voxel)
mc-gpu_dose.dat                 # OUTPUT VOXEL DOSE FILE NAME
1  3                            # VOXEL DOSE ROI: X-index min max (first voxel has index 1)
1  1                            # VOXEL DOSE ROI: Y-index min max
1  2                            # VOXEL DOSE ROI: Z-index min max

#[SECTION VOXELIZED GEOMETRY FILE v.2009-11-30]
XCAT4.vox                     # VOXEL GEOMETRY FILE (penEasy 2008 format; .gz accepted)

#[SECTION MATERIAL FILE LIST v.2009-11-30]
/wrk/MCGPU/materials2/muscle_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/blood_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/soft_tissue_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/breast_75-25_Hammerstein__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/lung_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/bone_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/stomach_intestines_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/cartilage_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/liver_ICRP110__5-120keV.mcgpu.gz
/wrk/MCGPU/materials2/air__5-120keV.mcgpu.gz


# >>>> END INPUT FILE >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
