.DEBUG OUTPUT: 0
[Answer: 0 otherwise very large amounts of output are produced]
.TEMPLATE FOR 2D RADON OUTPUT: *
[If * is answered no output is produced. Otherwise every
Radon transform (i.e. one for every combination of theta and
phi) that is extracted from the 3D Radon transform is written
to disk.]
.TEMPLATE FOR CCF OUTPUT: *
[If * is answered no ouptu is produced. Otherwise for each
combination of theta and phi one cross-correlation function
between the input and the extracted Radon transform is written
to disk.]
.3D RADON FILE: 3DRAD001
[Enter the name of the 3D Radon transform.]
.ENTER FILE TEMPLATE: RAD2D***
[Enter example name of two-dimensional input Radon transform.]
.ENTER FILE NUMBERS: 1-188
[Enter file numbers of input 2D transforms.]
.SAMPLING RANGE AND INCREMENT IN EXTRACTED RADON TRANSFORM:
.ALPHA FROM,TO (DEF=2D): -90,88
.INCREMENT (DEF=2D: 2
[Enter parameter for the Radon transforms that are extracted
from the 3D transform. The default is the same sampling as
the 2D Radon transform.]
.PEAK FILE: peak001
[Enter name of file for the 3D angular cross-coraltion function.]
.(S)HIFTALIGN,(N)O SHIFTALIGN: S
[Enter S if a simultaneous translational alignment is desired.]
.(S)UBSEARCH OR (C)OMPLETE SEARCH?(=DEF): C
[For C a search of the ranges specified below is executed.
If S is answered, the ranges specified below are centered
around angles that are read from the file header.]
.THETA RANGE OF SEARCH (FROM,TO): -90,80
.INCREMENT: 10
[Enter search range and incement for theta (second Euler angle
around y-axis.]
.PHI RANGE OF SEARCH (FROM,TO): -180,170
.INCRMENT: 10
[Enter search range and increment of first Euler Angle. (around
z-axis.]
.PSI RANGE OF SEARCH (FROM,TO): -180,170
.INCREMENT: 10
[Enter search range of third Euler angle (around z'-axis, within
the 2D projection plane.]
.DOCUMENT FILE: ALIDOC001
[Enter name of document file where the alignment parameters of each
2D-transform are stored. Key: counter, column 1:file number,
column 2: phi, column 3: theta, column 4: psi, column 5:x-shift,
column 6: y-shift.]
NOTES