.Selection doc file: SELECT
[Enter selection document file name containing the numbers
of the input images in the first column.]
.Expected size of the object: 25
[Expected size of the object in pixels should not exceed image size.]
.First and last ring: 5,15
[In the rotational alignment, only rings with the radii in the range
5-15 (in pixel units) will be analyzed.]
.Enter template for output file: OUA***
[The output files will contain averages produced by the alignment
program after each iteration step.]
.Enter template for output doc file: PRM***
[The document files will contain the alignment parameters after
each iteration. They contain three parameters: rotation angle and
x- and y-shifts. These parameters can be used directly in the RT SQ
operation to produce an aligned image series from the input image
series.
When used in conjunction with the Random Conical 3D reconstruction,
the rotation angle (phi) has to have its sign changed.]
NOTES