For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).
For RNA-seq, the cleaned reads were aligned to the human hg19 reference using Tophat (v2.0.12) with default settings (Trapnell et al., 2009). And for WGBS, bisulfite-converted reads were aligned to the human refference genome (hg19) using Bismark software (v0.7.6).