Published November 21, 2024 | Version v1.0.0
Presentation Open

BioSCape Data Skills Workshop - From the Field to the Image. October 9 - 11, 2024, Cape Town, South Africa

  • 1. Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC)
  • 2. Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
  • 3. Department of Geography, University at Buffalo, Buffalo, NY, USA
  • 4. Department of Civil and Environmental Engineering, University of California Merced, Merced, CA, USA
  • 5. Centre for Statistics in Ecology, Environment, and Conservation, University of Cape Town, Cape Town, South Africa
  • 6. Fynbos Node, South African Environmental Observation Network, Centre for Biodiversity Conservation, Cape Town, South Africa
  • 7. The Nature Conservancy, Cape Town, South Africa
  • 8. Department of Forest and Wildlife Ecology, University of Wisconsin Madison, Madison, Wisconsin, USA
  • 9. Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA

Description

BioSCape, the Biodiversity Survey of the Cape, is NASA’s first biodiversity-focused airborne and field campaign that was conducted in South Africa in 2023. BioSCape’s primary objective is to study the structure, function, and composition of the region’s ecosystems, and how and why they are changing.

BioSCape’s airborne dataset is unprecedented, with AVIRIS-NG, PRISM, and HyTES imaging spectrometers capturing spectral data across the UV, visible and infrared at high resolution and LVIS acquiring coincident full-waveform lidar. BioSCape’s field dataset is equally impressive, with 18 PI-led projects collecting data ranging from the diversity and phylogeny of plants, kelp and phytoplankton, eDNA, landscape acoustics, plant traits, blue carbon accounting, and more

This workshop will equip participants with the skills to find, subset, and visualize the various BioSCape field and airborne (imaging spectroscopy and full-waveform lidar) data sets. Participants will learn data skills through worked examples in terrestrial and aquatic ecosystems, including: wrangling lidar data, performing band math calculations, calculating spectral diversity metrics, machine learning and image classification, and mapping functional traits using partial least squares regression. The workshop format is a mix of expert talks and interactive coding notebooks and will be run through the BioSCape Cloud computing environment.

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ornldaac/bioscape_workshop_sa-v1.0.0.zip

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Software

Repository URL
https://github.com/ornldaac/bioscape_workshop_sa
Programming language
Python