ome/bioformats-v8.0.1.zip
ome-bioformats-b886325
.classpath-template
1.1 kB
.gitattributes
171 Bytes
.github
workflows
ant.yml
766 Bytes
maven.yml
3.2 kB
release.yml
851 Bytes
.gitignore
230 Bytes
.mailmap
5.0 kB
CONTRIBUTING.md
2.5 kB
Dockerfile
667 Bytes
LICENSE.txt
18.0 kB
README.md
2.6 kB
SUPPORT.md
872 Bytes
ant
common.properties
1.1 kB
common.xml
863 Bytes
global.properties
482 Bytes
global.xml
5.2 kB
java.properties
204 Bytes
java.xml
12.1 kB
logback.xml
299 Bytes
package-list
121 Bytes
toplevel.xml
15.6 kB
build.xml
6.8 kB
checkstyle.xml
6.6 kB
components
bio-formats-plugins
LICENSE.txt
18.0 kB
build.properties
601 Bytes
build.xml
1.2 kB
pom.xml
5.7 kB
src
loci
plugins
About.java
3.3 kB
BF.java
3.7 kB
LociExporter.java
2.5 kB
LociImporter.java
2.7 kB
Slicer.java
9.9 kB
Updater.java
4.5 kB
config
CellSensWidgets.java
2.5 kB
ConfigWindow.java
21.6 kB
FormatEntry.java
3.6 kB
IFormatWidgets.java
1.4 kB
InstallWizard.java
5.1 kB
LIFWidgets.java
2.5 kB
LibraryEntry.java
4.9 kB
LociConfig.java
1.7 kB
LociInstaller.java
1.6 kB
ND2Widgets.java
2.4 kB
SDTWidgets.java
2.3 kB
SpringUtilities.java
9.4 kB
TextAreaWriter.java
2.1 kB
TiffDelegateWidgets.java
2.3 kB
ZeissCZIWidgets.java
2.8 kB
libraries.txt
7.7 kB
package.html
1.1 kB
in
Calibrator.java
6.3 kB
ColorDialog.java
5.8 kB
Colorizer.java
15.6 kB
Concatenator.java
4.5 kB
CropDialog.java
3.6 kB
DisplayHandler.java
7.9 kB
FilePatternDialog.java
9.6 kB
IdDialog.java
5.8 kB
ImagePlusReader.java
22.9 kB
ImportProcess.java
23.7 kB
ImportStep.java
2.3 kB
Importer.java
6.0 kB
ImporterDialog.java
2.4 kB
ImporterMetadata.java
4.5 kB
ImporterOptions.java
22.2 kB
ImporterPrompter.java
5.8 kB
LocationDialog.java
2.0 kB
MainDialog.java
25.1 kB
MemoryDialog.java
3.0 kB
RangeDialog.java
6.2 kB
SeriesDialog.java
9.2 kB
SwapDialog.java
5.5 kB
ThumbLoader.java
5.3 kB
UpgradeDialog.java
3.8 kB
importer-options.txt
14.5 kB
package.html
1.1 kB
macro
LociFunctions.java
31.1 kB
MacroFunctions.java
3.8 kB
package.html
1.1 kB
out
Exporter.java
37.2 kB
package.html
1.1 kB
package.html
1.3 kB
prefs
BooleanOption.java
3.1 kB
DoubleOption.java
3.0 kB
Option.java
3.4 kB
OptionsDialog.java
2.8 kB
OptionsList.java
7.9 kB
StringOption.java
4.4 kB
package.html
1.1 kB
shortcut
ShortcutPanel.java
7.3 kB
ShortcutTransferHandler.java
5.0 kB
package.html
1.1 kB
util
BFVirtualStack.java
8.3 kB
BrowserOptionsWindow.java
1.8 kB
DataBrowser.java
15.7 kB
IJStatusEchoer.java
1.7 kB
ImageProcessorReader.java
12.7 kB
ImageProcessorSource.java
2.4 kB
LibraryChecker.java
5.8 kB
LociPrefs.java
6.7 kB
ROIHandler.java
37.4 kB
RecordedImageProcessor.java
33.0 kB
SearchableWindow.java
6.6 kB
VirtualImagePlus.java
3.7 kB
VirtualReader.java
1.8 kB
WindowTools.java
6.4 kB
package.html
1.1 kB
plugins.config
2.7 kB
test
loci
plugins
in
AutoscaleTest.java
12.7 kB
ImporterTest.java
87.6 kB
MacroTest.java
4.9 kB
testng.xml
1.5 kB
utils
Mass_Importer.java
4.1 kB
Read_Image.java
3.6 kB
Simple_Read.java
1.9 kB
macros
basicMetadata.txt
655 Bytes
batchTiffConvert.txt
1.3 kB
bfOpenAsHyperstack.txt
1.1 kB
dvSplitTimePoints.txt
2.7 kB
planePositions.txt
769 Bytes
planeTimings.txt
970 Bytes
recursiveTiffConvert.txt
1.7 kB
zvi2HyperStack.txt
1.8 kB
bio-formats-tools
LICENSE.txt
1.4 kB
build.properties
488 Bytes
build.xml
952 Bytes
pom.xml
5.7 kB
src
loci
formats
tools
CommandLineTools.java
2.9 kB
GenerateCache.java
4.1 kB
ImageConverter.java
50.5 kB
ImageFaker.java
5.2 kB
ImageInfo.java
40.5 kB
PrintDomains.java
2.9 kB
PrintFormatTable.java
7.8 kB
TiffComment.java
5.3 kB
XMLIndent.java
3.1 kB
XMLValidate.java
4.6 kB
test
loci
formats
tools
ImageConverterTest.java
14.9 kB
testng.xml
1.7 kB
bundles
bioformats_package
LICENSE.txt
18.0 kB
assembly.xml
1.6 kB
build.properties
1.9 kB
build.xml
2.8 kB
pom.xml
3.5 kB
forks
readme.txt
70 Bytes
turbojpeg
LICENSE.txt
18.0 kB
build.properties
427 Bytes
build.xml
423 Bytes
lib
linux_32
libturbojpeg.so
449.5 kB
linux_64
libturbojpeg.so
352.7 kB
osx_32
libturbojpeg.dylib
786.3 kB
osx_64
libturbojpeg.dylib
325.9 kB
osx_ppc
libturbojpeg.dylib
786.3 kB
windows_32
turbojpeg.dll
349.2 kB
windows_64
turbojpeg.dll
381.4 kB
pom.xml
1.3 kB
src
TJExample.java
15.3 kB
TJUnitTest.java
31.2 kB
org
libjpegturbo
turbojpeg
TJ.java
14.7 kB
TJCompressor.java
19.2 kB
TJCustomFilter.java
4.5 kB
TJDecompressor.java
21.9 kB
TJLoader.java
2.6 kB
TJScalingFactor.java
4.1 kB
TJTransform.java
8.4 kB
TJTransformer.java
7.6 kB
formats-api
LICENSE.txt
1.4 kB
build.properties
577 Bytes
build.xml
1.2 kB
pom.xml
7.5 kB
src
loci
formats
ClassList.java
11.6 kB
CoreMetadata.java
7.8 kB
CoreMetadataList.java
6.2 kB
DelegateReader.java
10.5 kB
FileInfo.java
2.2 kB
FormatException.java
2.0 kB
FormatHandler.java
5.3 kB
FormatReader.java
59.5 kB
FormatTools.java
73.6 kB
FormatWriter.java
19.2 kB
ICompressedTileReader.java
4.4 kB
ICompressedTileWriter.java
2.9 kB
IFormatHandler.java
2.5 kB
IFormatReader.java
23.2 kB
IFormatWriter.java
9.7 kB
IMetadataConfigurable.java
1.9 kB
IPyramidHandler.java
2.1 kB
ImageReader.java
26.7 kB
ImageWriter.java
14.6 kB
MetadataList.java
7.0 kB
MetadataTools.java
32.7 kB
MissingLibraryException.java
2.1 kB
Modulo.java
4.1 kB
ReaderWrapper.java
19.2 kB
Resolution.java
2.2 kB
SubResolutionFormatReader.java
6.7 kB
UnknownFormatException.java
2.0 kB
UnsupportedCompressionException.java
2.1 kB
WrappedReader.java
11.8 kB
WriterWrapper.java
13.3 kB
codec
Codec.java
4.9 kB
CodecOptions.java
5.4 kB
in
DefaultMetadataOptions.java
2.7 kB
DynamicMetadataOptions.java
15.2 kB
MetadataLevel.java
1.7 kB
MetadataOptions.java
2.4 kB
meta
BaseMetadata.java
1.7 kB
DummyMetadata.java
1.7 kB
FilterMetadata.java
1.8 kB
IMetadata.java
1.7 kB
IMinMaxStore.java
2.1 kB
IPyramidStore.java
3.9 kB
MetadataConverter.java
2.8 kB
MetadataRetrieve.java
1.7 kB
MetadataStore.java
1.7 kB
ModuloAnnotation.java
4.2 kB
OriginalMetadataAnnotation.java
3.6 kB
package.html
1.6 kB
ome
AbstractOMEXMLMetadata.java
1.8 kB
OMEPyramidStore.java
8.7 kB
OMEXMLMetadata.java
1.8 kB
OMEXMLMetadataImpl.java
1.7 kB
package.html
1.8 kB
readers.txt
9.5 kB
services
OMEXMLService.java
11.9 kB
OMEXMLServiceImpl.java
46.1 kB
writers.txt
866 Bytes
test
loci
formats
utests
ClassListTest.java
10.1 kB
CoreMetadataListTest.java
11.9 kB
DefaultMetadataOptionsTest.java
2.7 kB
DynamicMetadataOptionsTest.java
12.5 kB
FormatToolsTest.java
11.6 kB
MetadataListTest.java
6.4 kB
iterables.txt
43 Bytes
testng-template.xml
2.3 kB
formats-bsd
.gitignore
6 Bytes
LICENSE.txt
1.4 kB
build.properties
674 Bytes
build.xml
5.7 kB
matlab
bfCheckJavaMemory.m
2.5 kB
bfCheckJavaPath.m
3.5 kB
bfGetFileExtensions.m
2.9 kB
bfGetPlane.m
4.4 kB
bfGetPlaneAtZCT.m
3.0 kB
bfGetReader.m
3.2 kB
bfInitLogging.m
2.2 kB
bfOpen3DVolume.m
2.5 kB
bfTestInRange.m
2.5 kB
bfUpgradeCheck.m
3.0 kB
bfopen.m
8.2 kB
bfsave.m
6.4 kB
createMinimalOMEXMLMetadata.m
4.6 kB
private
is_octave.m
1.6 kB
octave
DESCRIPTION.in
333 Bytes
PKG_ADD
1.3 kB
pom.xml
11.4 kB
src
loci
formats
AxisGuesser.java
13.2 kB
ChannelFiller.java
9.3 kB
ChannelMerger.java
7.6 kB
ChannelSeparator.java
11.8 kB
DimensionSwapper.java
11.2 kB
FilePattern.java
28.4 kB
FilePatternBlock.java
6.9 kB
FileStitcher.java
46.4 kB
IllegalBlockException.java
2.0 kB
ImageTools.java
23.9 kB
Memoizer.java
37.1 kB
MinMaxCalculator.java
14.1 kB
NumberFilter.java
3.0 kB
ResourceNamer.java
4.9 kB
SwappableMetadata.java
3.1 kB
UpgradeChecker.java
11.9 kB
cache
ByteArraySource.java
2.5 kB
Cache.java
9.5 kB
CacheEvent.java
4.1 kB
CacheException.java
2.0 kB
CacheListener.java
1.8 kB
CacheReporter.java
2.0 kB
CacheSource.java
2.8 kB
CacheStrategy.java
10.0 kB
CacheUpdater.java
2.9 kB
CrosshairStrategy.java
3.4 kB
ICacheSource.java
2.2 kB
ICacheStrategy.java
3.5 kB
RectangleStrategy.java
3.3 kB
package.html
1.7 kB
codec
Base64Codec.java
2.0 kB
BaseCodec.java
7.5 kB
BitBuffer.java
3.8 kB
BitWriter.java
2.9 kB
ByteVector.java
2.6 kB
CompressionType.java
4.2 kB
HuffmanCodec.java
2.7 kB
HuffmanCodecOptions.java
1.8 kB
JPEG2000BoxType.java
4.2 kB
JPEG2000Codec.java
2.6 kB
JPEG2000CodecOptions.java
4.3 kB
JPEG2000SegmentMarker.java
4.2 kB
JPEGCodec.java
2.2 kB
JPEGTileDecoder.java
2.9 kB
JPEGXRCodec.java
4.6 kB
LZOCodec.java
2.0 kB
LZWCodec.java
3.5 kB
LosslessJPEGCodec.java
2.1 kB
MJPBCodec.java
2.0 kB
MJPBCodecOptions.java
1.8 kB
MSRLECodec.java
2.0 kB
MSVideoCodec.java
2.1 kB
NikonCodec.java
10.1 kB
NikonCodecOptions.java
1.8 kB
PackbitsCodec.java
2.1 kB
PassthroughCodec.java
2.0 kB
QTRLECodec.java
2.0 kB
RPZACodec.java
2.0 kB
TargaRLECodec.java
3.7 kB
WrappedCodec.java
7.1 kB
ZlibCodec.java
2.0 kB
ZstdCodec.java
2.0 kB
dicom
DicomAttribute.java
33.9 kB
DicomFileInfo.java
5.1 kB
DicomJSONProvider.java
6.7 kB
DicomTag.java
22.4 kB
DicomTile.java
2.1 kB
DicomVR.java
3.0 kB
ITagProvider.java
2.2 kB
ResolutionStrategy.java
1.7 kB
dicom-dictionary.txt
206.6 kB
gui
AWTImageTools.java
72.1 kB
BufferedImageReader.java
3.9 kB
BufferedImageSource.java
2.9 kB
BufferedImageWriter.java
5.3 kB
CacheComponent.java
15.2 kB
CacheIndicator.java
5.9 kB
ComboFileFilter.java
5.2 kB
DataConverter.java
23.6 kB
ExtensionFileFilter.java
4.0 kB
FormatFileFilter.java
4.0 kB
GUITools.java
9.3 kB
ImageViewer.java
27.2 kB
Index16ColorModel.java
4.9 kB
NoExtensionFileFilter.java
2.6 kB
PreviewPane.java
10.9 kB
SignedByteBuffer.java
3.1 kB
SignedColorModel.java
7.8 kB
SignedShortBuffer.java
3.7 kB
TwoChannelColorSpace.java
3.1 kB
UnsignedIntBuffer.java
4.5 kB
UnsignedIntColorModel.java
5.9 kB
XMLCellRenderer.java
7.3 kB
XMLWindow.java
5.2 kB
package.html
1.6 kB
in
APNGReader.java
25.9 kB
AVIReader.java
32.2 kB
BDVReader.java
34.0 kB
BIFormatReader.java
3.6 kB
BMPReader.java
12.9 kB
BaseTiffReader.java
19.8 kB
CellH5Reader.java
24.3 kB
DicomReader.java
73.1 kB
EPSReader.java
11.0 kB
FakeReader.java
55.0 kB
FilePatternReader.java
7.5 kB
FitsReader.java
5.6 kB
FlowSightReader.java
16.9 kB
GIFReader.java
14.7 kB
ICSReader.java
67.7 kB
IM3Reader.java
30.5 kB
ImageIOReader.java
4.9 kB
JPEG2000MetadataParser.java
15.5 kB
JPEG2000Reader.java
8.7 kB
JPEGReader.java
9.0 kB
KLBReader.java
24.9 kB
MNGReader.java
8.7 kB
MicromanagerReader.java
42.4 kB
MinimalTiffReader.java
25.8 kB
NRRDReader.java
15.8 kB
OBFReader.java
33.2 kB
OMETiffReader.java
53.7 kB
OMEXMLReader.java
14.3 kB
PCXReader.java
6.1 kB
PGMReader.java
6.8 kB
PictReader.java
19.0 kB
QTReader.java
21.5 kB
SlideBook7Reader.java
110.9 kB
TextReader.java
14.0 kB
TiffDelegateReader.java
3.5 kB
TiffJAIReader.java
6.7 kB
TiffReader.java
14.9 kB
TileJPEGReader.java
4.7 kB
ZipReader.java
6.4 kB
out
APNGWriter.java
11.1 kB
AVIWriter.java
21.0 kB
CellH5Writer.java
9.2 kB
DicomWriter.java
81.6 kB
EPSWriter.java
5.5 kB
ICSWriter.java
13.0 kB
IExtraMetadataWriter.java
2.2 kB
ImageIOWriter.java
4.1 kB
JPEG2000Writer.java
5.5 kB
JPEGWriter.java
2.1 kB
JavaWriter.java
8.8 kB
OMETiffWriter.java
16.0 kB
OMEXMLWriter.java
11.2 kB
PyramidOMETiffWriter.java
5.6 kB
QTWriter.java
17.3 kB
TiffWriter.java
24.5 kB
V3DrawWriter.java
8.1 kB
package.html
1.6 kB
services
EXIFService.java
2.0 kB
EXIFServiceImpl.java
3.4 kB
JAIIIOService.java
4.9 kB
JAIIIOServiceImpl.java
7.7 kB
JHDFService.java
7.6 kB
JHDFServiceImpl.java
9.7 kB
JPEGTurboService.java
4.6 kB
JPEGTurboServiceImpl.java
14.0 kB
JPEGXRService.java
2.2 kB
JPEGXRServiceImpl.java
4.2 kB
tiff
IFD.java
36.7 kB
IFDList.java
1.8 kB
IFDType.java
3.5 kB
OnDemandLongArray.java
3.0 kB
PhotoInterp.java
4.5 kB
TiffCompression.java
13.7 kB
TiffConstants.java
2.6 kB
TiffIFDEntry.java
3.5 kB
TiffParser.java
48.1 kB
TiffRational.java
4.7 kB
TiffSaver.java
43.6 kB
package.html
1.6 kB
tools
AmiraParameters.java
15.3 kB
AsciiImage.java
2.8 kB
BioFormatsExtensionPrinter.java
2.8 kB
CacheConsole.java
14.1 kB
EditTiffG.java
6.9 kB
FakeImage.java
6.0 kB
MakeTestOmeTiff.java
15.0 kB
UpgradeCheck.java
3.3 kB
package.html
1.7 kB
test
loci
formats
utests
AxisGuesserTest.java
8.3 kB
BaseModelMock.java
6.9 kB
BaseModelNoBinDataReaderTest.java
3.1 kB
BaseModelReaderTest.java
3.2 kB
CompressDecompressTest.java
5.8 kB
ConversionTest.java
14.2 kB
DimensionSwapperTest.java
4.6 kB
EightBitLosslessJPEG2000Test.java
4.3 kB
FakeReaderTest.java
27.3 kB
FilePatternBlockTest.java
5.9 kB
FilePatternTest.java
11.9 kB
FileStitcherTest.java
10.0 kB
GenericExcitationMapTest.java
5.8 kB
ImageReaderTest.java
3.2 kB
ImagingEnvironmentMapTest.java
5.1 kB
IsThisTypeTests.java
3.1 kB
JHDFServiceTest.java
3.9 kB
LosslessJPEG2000Test.java
5.1 kB
MapAnnotationTest.java
5.4 kB
MemoizerTest.java
8.9 kB
MinMaxCalculatorTest.java
11.5 kB
MissingEXIFTest.java
2.3 kB
MissingJHDFServiceTest.java
2.3 kB
MissingOMEXMLServiceTest.java
2.3 kB
ModelMock.java
1.8 kB
OMEXMLServiceTest.java
5.4 kB
PumpWithLightSourceSettingsTest.java
3.9 kB
ReaderEqualityTest.java
5.0 kB
SPWModelMock.java
18.0 kB
SPWModelReaderTest.java
7.8 kB
ServiceFactoryTest.java
2.3 kB
SixteenBitLosslessJPEG2000LongRunningTest.java
1.9 kB
SixteenBitLosslessJPEG2000Test.java
4.7 kB
WrapperTest.java
4.2 kB
dicom
ProvidedMetadataTest.java
14.0 kB
out
ICSWriterTest.java
8.8 kB
OMETiffWriterTest.java
9.0 kB
Plane.java
5.3 kB
TiffWriterTest.java
15.7 kB
WriterUtilities.java
12.5 kB
test_jhdf.h5
8.8 kB
testng-long-running.xml
1.8 kB
testng-no-exif.xml
1.8 kB
testng-no-jhdf.xml
1.8 kB
testng-no-ome-xml.xml
1.8 kB
testng.xml
6.6 kB
tiff
BaseTiffMock.java
4.4 kB
BaseTiffReaderMock.java
2.2 kB
BaseTiffReaderTest.java
4.1 kB
BitsPerSampleSamplesPerPixelMismatchMock.java
2.0 kB
ByteArrayHandleMock.java
2.5 kB
IFDTypeTest.java
2.1 kB
NonUniformRowsPerStripMock.java
2.0 kB
OMETiffWriterBigTiffLargeImageWidthTest.java
4.1 kB
OMETiffWriterLargeImageWidthTest.java
4.0 kB
OMETiffWriterUnicodeTest.java
4.6 kB
PhotoInterpTest.java
2.1 kB
PyramidTest.java
12.7 kB
RGBTiffMock.java
2.0 kB
TiffCompressionCompressTest.java
10.4 kB
TiffCompressionDecompressTest.java
6.7 kB
TiffCompressionTest.java
2.1 kB
TiffParserTest.java
7.0 kB
TiffPixelsTest.java
6.1 kB
TiffRationalTest.java
2.8 kB
TiffSaverTest.java
6.0 kB
TiffTileReadingTest.java
5.6 kB
TiffWriterMock.java
3.0 kB
spec
AbstractTest.java
7.6 kB
schema
Schema2011_06_File_Upgrade_Test.java
50.1 kB
Schema2011_06_Instrument_Upgrade_Test.java
24.8 kB
Schema2011_06_TO_2012_06_Test.java
4.0 kB
SchemaCurrent_TO_2003_FC_Test.java
13.3 kB
SchemaCurrent_TO_2008_02_Test.java
14.2 kB
SchemaCurrent_TO_2010_06_Test.java
14.8 kB
SchemaResolverTest.java
3.3 kB
Schema_Transform_Test.java
29.1 kB
samples
2011-06
6x4y1z1t1c8b-swatch-instrument.ome
3.5 kB
6x4y1z1t1c8b-swatch.ome
1.0 kB
6x4y1z1t3c8b-swatch-upgrade.ome
9.7 kB
Instrument2011_06.java
11.3 kB
Upgrade2011_06.java
19.1 kB
testng.xml
1.9 kB
utils
mipav
PlugInBioFormatsImporter.java
12.2 kB
readme.txt
1.9 kB
formats-gpl
LICENSE.txt
18.0 kB
build.properties
594 Bytes
build.xml
4.2 kB
doc
sorttable.js
17.8 kB
logo
loci-logo.eps
4.5 MB
loci.ai.pdf
1.1 MB
loci_flat.psd
92.1 kB
loci_trans.psd
174.2 kB
pom.xml
13.7 kB
src
loci
formats
TileStitcher.java
10.5 kB
bio-formats-logo.png
5.8 kB
in
AFIReader.java
12.7 kB
AIMReader.java
6.4 kB
APLReader.java
16.1 kB
ARFReader.java
4.8 kB
AliconaReader.java
9.2 kB
AmiraReader.java
15.8 kB
AnalyzeReader.java
11.3 kB
BDReader.java
27.4 kB
BaseZeissReader.java
88.8 kB
BioRadGelReader.java
7.7 kB
BioRadReader.java
41.1 kB
BioRadSCNReader.java
9.7 kB
BrukerReader.java
14.4 kB
BurleighReader.java
5.8 kB
CV7000Reader.java
37.8 kB
CanonRawReader.java
5.0 kB
CellSensReader.java
91.6 kB
CellVoyagerReader.java
40.1 kB
CellWorxReader.java
30.6 kB
CellomicsReader.java
21.0 kB
ColumbusReader.java
24.0 kB
DNGReader.java
11.9 kB
DeltavisionReader.java
109.9 kB
Ecat7Reader.java
15.1 kB
FEIReader.java
4.7 kB
FEITiffReader.java
14.5 kB
FV1000Reader.java
61.5 kB
FlexReader.java
70.8 kB
FluoviewReader.java
31.8 kB
FujiReader.java
6.2 kB
GatanDM2Reader.java
11.9 kB
GatanReader.java
29.7 kB
GelReader.java
7.1 kB
HISReader.java
8.0 kB
HRDGDFReader.java
6.7 kB
HamamatsuVMSReader.java
12.4 kB
HitachiReader.java
11.0 kB
I2IReader.java
5.4 kB
IMODReader.java
15.2 kB
INRReader.java
5.5 kB
IPLabReader.java
12.7 kB
IPWReader.java
10.8 kB
ImaconReader.java
7.2 kB
ImagicReader.java
10.6 kB
ImarisHDFReader.java
19.8 kB
ImarisReader.java
7.6 kB
ImarisTiffReader.java
6.0 kB
ImprovisionTiffReader.java
13.4 kB
ImspectorReader.java
18.2 kB
InCell3000Reader.java
4.6 kB
InCellReader.java
40.4 kB
InveonReader.java
23.3 kB
IonpathMIBITiffReader.java
8.8 kB
IvisionReader.java
11.8 kB
JEOLReader.java
5.8 kB
JPKReader.java
4.3 kB
JPXReader.java
8.0 kB
KhorosReader.java
5.1 kB
KodakReader.java
8.5 kB
L2DReader.java
13.4 kB
LEOReader.java
5.4 kB
LIFReader.java
88.6 kB
LIMReader.java
3.8 kB
LIPixelFormat.java
6.2 kB
LOFReader.java
16.3 kB
LeicaHandler.java
42.1 kB
LeicaMicrosystemsMetadata
Channel.java
2.4 kB
Dimension.java
3.2 kB
LMSCollectionXmlDocument.java
3.7 kB
LMSFileReader.java
4.8 kB
LMSImageXmlDocument.java
1.8 kB
LMSMetadataExtractor.java
49.4 kB
LMSXmlDocument.java
9.1 kB
LofXmlDocument.java
2.1 kB
MetadataStoreInitializer.java
21.8 kB
MetadataTempBuffer.java
10.9 kB
MultipleImagesReader.java
8.1 kB
ROI.java
6.3 kB
XlcfDocument.java
1.4 kB
XlefDocument.java
2.1 kB
XlifDocument.java
4.7 kB
LeicaReader.java
55.4 kB
LeicaSCNReader.java
25.7 kB
LiFlimReader.java
26.6 kB
MIASReader.java
42.1 kB
MINCReader.java
11.4 kB
MRCReader.java
12.0 kB
MRWReader.java
7.5 kB
MetamorphHandler.java
10.4 kB
MetamorphReader.java
75.2 kB
MetamorphTiffReader.java
22.5 kB
MetaxpressTiffReader.java
8.6 kB
MicroCTReader.java
10.8 kB
MikroscanTiffReader.java
3.5 kB
MolecularImagingReader.java
5.2 kB
NAFReader.java
5.7 kB
ND2Handler.java
29.9 kB
ND2Reader.java
95.3 kB
NDPIReader.java
30.8 kB
NDPISReader.java
8.8 kB
NiftiReader.java
16.2 kB
NikonElementsTiffReader.java
9.2 kB
NikonReader.java
15.3 kB
NikonTiffReader.java
10.8 kB
OIRReader.java
57.1 kB
OlympusTileReader.java
12.8 kB
OpenlabRawReader.java
5.8 kB
OpenlabReader.java
28.2 kB
OperettaReader.java
42.0 kB
OxfordInstrumentsReader.java
6.4 kB
PCIReader.java
17.1 kB
PCORAWReader.java
7.6 kB
PDSReader.java
9.1 kB
PQBinReader.java
8.5 kB
PSDReader.java
9.2 kB
PerkinElmerReader.java
27.7 kB
PhotoshopTiffReader.java
9.8 kB
PovrayReader.java
3.1 kB
PrairieMetadata.java
36.5 kB
PrairieReader.java
31.2 kB
PyramidTiffReader.java
5.4 kB
QuesantReader.java
5.9 kB
RCPNLReader.java
4.0 kB
RHKReader.java
6.3 kB
SBIGReader.java
6.6 kB
SDTInfo.java
33.0 kB
SDTReader.java
14.8 kB
SEQReader.java
9.6 kB
SIFReader.java
5.3 kB
SISReader.java
9.5 kB
SMCameraReader.java
3.5 kB
SPCReader.java
21.2 kB
SPEReader.java
36.2 kB
SVSReader.java
25.4 kB
ScanrReader.java
28.7 kB
SeikoReader.java
3.6 kB
SimplePCITiffReader.java
8.9 kB
SlidebookReader.java
44.4 kB
SlidebookTiffReader.java
9.7 kB
SpiderReader.java
8.6 kB
TCSReader.java
18.6 kB
TargaReader.java
7.6 kB
TecanReader.java
33.3 kB
TillVisionReader.java
23.2 kB
TopometrixReader.java
6.1 kB
TrestleReader.java
11.6 kB
UBMReader.java
3.1 kB
UnisokuReader.java
7.3 kB
VGSAMReader.java
3.3 kB
VarianFDFReader.java
10.8 kB
VectraReader.java
23.0 kB
VeecoReader.java
5.9 kB
VentanaReader.java
31.5 kB
VisitechReader.java
11.1 kB
VolocityClippingReader.java
4.8 kB
VolocityReader.java
28.9 kB
WATOPReader.java
5.1 kB
XLEFReader.java
14.9 kB
ZeissCZIReader.java
157.9 kB
ZeissLMSReader.java
5.7 kB
ZeissLSMReader.java
85.6 kB
ZeissTIFFHandler.java
25.8 kB
ZeissTIFFReader.java
21.2 kB
ZeissZVIReader.java
23.6 kB
package.html
1.0 kB
package.html
1.1 kB
services
MDBService.java
2.8 kB
MDBServiceImpl.java
5.7 kB
MetakitService.java
2.8 kB
MetakitServiceImpl.java
4.0 kB
NetCDFService.java
4.2 kB
NetCDFServiceImpl.java
9.7 kB
POIService.java
3.9 kB
POIServiceImpl.java
5.5 kB
test
loci
formats
utests
DeltavisionMetadataConfigurableTest.java
4.3 kB
GetLightSourceTypeTest.java
2.4 kB
IMetadataBasedOMEModelMock.java
13.3 kB
InOutCurrentTest.java
34.0 kB
MDBServiceTest.java
3.0 kB
MissingMDBServiceTest.java
1.7 kB
MissingNetCDFServiceTest.java
1.7 kB
MissingPOIServiceTest.java
1.7 kB
ND2HandlerTest.java
2.2 kB
NetCDFServiceTest.java
7.2 kB
OMEModelMock.java
1.1 kB
ObjectBasedOMEModelMock.java
15.0 kB
POIServiceTest.java
3.0 kB
XMLAnnotationTest.java
3.1 kB
XMLAnnotationTest.ome
6.1 kB
codec
CompressionTypeTest.java
1.5 kB
in
PrairieMetadataTest.java
7.0 kB
test.h5
74.6 kB
test.mdb
409.6 kB
test.xls
17.9 kB
testng-no-mdb.xml
1.2 kB
testng-no-netcdf.xml
1.2 kB
testng-no-poi.xml
1.2 kB
testng.xml
2.3 kB
xml
2008-09.ome
10.1 kB
2009-09.ome
1.4 kB
2010-04.ome
2.8 kB
2010-06.ome
1.0 kB
2011-06.ome
1.2 kB
BackReferenceTest.java
2.3 kB
OMEXMLServiceTest.java
3.4 kB
Upgrade200809Test.java
3.1 kB
Upgrade200909Test.java
2.9 kB
Upgrade201004Test.java
3.0 kB
Upgrade201006Test.java
3.0 kB
Upgrade201106Test.java
2.9 kB
matlab
ReaderTest.m
2.3 kB
TestBfCheckJavaMemory.m
2.5 kB
TestBfCheckJavaPath.m
3.5 kB
TestBfGetPlane.m
9.7 kB
TestBfGetReader.m
9.4 kB
TestBfInitLogging.m
4.7 kB
TestBfMatlab.m
2.3 kB
TestBfUpgradeCheck.m
1.9 kB
TestBfopen.m
5.6 kB
TestBfsave.m
9.3 kB
TestMemoizer.m
4.3 kB
utils
AlternativeMinimumPyramidWriter.java
3.3 kB
CommentSurgery.java
2.3 kB
ConvertToOmeTiff.java
2.7 kB
DumpOMEXML.java
2.2 kB
EditImageName.java
2.5 kB
EditTiffComment.java
2.5 kB
ExtractFlexMetadata.java
2.2 kB
ExtractSDTData.java
2.3 kB
FileWriteSPW.java
14.1 kB
GetPhysicalMetadata.java
4.1 kB
MakeLZW.java
2.2 kB
MinimumPyramidWriter.java
3.3 kB
MinimumWriter.java
2.6 kB
MultiFileExample.java
2.2 kB
MultiFileExportExample.java
3.3 kB
ParallelRead.java
2.3 kB
PrecompressedConversionExample.java
4.7 kB
PrecompressedExample.java
3.6 kB
PrintLensNA.java
2.8 kB
PrintROIs.java
7.0 kB
PrintTimestamps.java
6.4 kB
ReadWriteInMemory.java
5.2 kB
SewTiffs.java
3.7 kB
SubResolutionExample.java
2.3 kB
SumPlanes.java
2.8 kB
TiffDumper.java
2.6 kB
TiledExportExample.java
2.9 kB
WritePrecompressedPlanes.java
4.4 kB
WritePyramid.java
3.9 kB
WriteRGBMovie.java
3.0 kB
showinfJNI.cpp
5.0 kB
writeMapAnnotationsExample.java
4.6 kB
test-suite
LICENSE.txt
18.0 kB
bftest
781 Bytes
build.properties
652 Bytes
build.xml
24.7 kB
logback-target-test-runner.xml
832 Bytes
logback-trace.xml
1.2 kB
logback.xml
1.1 kB
pom.xml
6.1 kB
src
loci
tests
IOTester.java
5.7 kB
ImageTester.java
7.6 kB
SingularityTest.java
2.4 kB
ZipTester.java
3.9 kB
package.html
1.0 kB
testng
Configuration.java
29.0 kB
ConfigurationTree.java
7.8 kB
DotTestListener.java
2.0 kB
EquivalentPixelsTest.java
5.2 kB
FileHandleTest.java
3.2 kB
FormatReaderTest.java
113.0 kB
FormatReaderTestFactory.java
13.1 kB
FormatWriterTest.java
11.0 kB
FormatWriterTestFactory.java
4.7 kB
Jpeg2000GrindTest.java
11.5 kB
MetadataConfigurableTest.java
7.5 kB
OpenBytesPerformanceTest.java
14.9 kB
OrderingListener.java
2.4 kB
ReportEnabledStatus.java
5.1 kB
SubResolutionTest.java
2.3 kB
TestTools.java
18.6 kB
ThreadNameBasedDiscriminator.java
1.7 kB
TiffWriterTest.java
14.0 kB
TimestampedLogFileAppender.java
2.0 kB
package.html
1.0 kB
target-test-runner
5.2 kB
test
loci
tests
testng
ConfigurationTreeTest.java
2.9 kB
config
BFSourceCleanup.xml
3.7 kB
BFSourceFormat.xml
29.6 kB
excludebugs.xml
721 Bytes
jar
ant-contrib-1.0b3.jar
224.3 kB
checkstyle-all-5.0.jar
1.8 MB
loci-checks.jar
2.2 kB
maven-resolver-ant-tasks-1.4.0-uber.jar
4.4 MB
testng-6.8.jar
1.4 MB
pom.xml
22.6 kB
tools
bf-unconfigured
417 Bytes
bf-unconfigured.bat
341 Bytes
bf.bat
2.1 kB
bf.sh
2.1 kB
bfconvert
356 Bytes
bfconvert.bat
280 Bytes
bump_maven_version.py
3.0 kB
cachegen
203 Bytes
cachegen.bat
269 Bytes
config.bat
1.1 kB
config.sh
1.1 kB
domainlist
357 Bytes
domainlist.bat
281 Bytes
formatlist
361 Bytes
formatlist.bat
285 Bytes
ijview
1.4 kB
ijview.bat
1.3 kB
logback.xml
281 Bytes
mkfake
383 Bytes
mkfake.bat
301 Bytes
mkplate.py
1.2 kB
showinf
410 Bytes
showinf.bat
340 Bytes
source-archive.py
6.5 kB
test-build
779 Bytes
test-build.bat
827 Bytes
tiffcomment
400 Bytes
tiffcomment.bat
330 Bytes
update_copyright
1.2 kB
xmlindent
338 Bytes
xmlindent.bat
262 Bytes
xmlvalid
334 Bytes
xmlvalid.bat
258 Bytes