Cell specificity of human regulatory annotations and their genetic effects on gene expression

Processed data for the manuscript: Cell specificty of regulatory annotations and their genetics effects on gene expression.

The code to generate these data is included in the zip-file: regulatoryAnnotations_comparisons-master.zip

and at GitHub:  https://github.com/ParkerLab/regulatoryAnnotations_comparisons

Individual dataset information:

numberOfSegments.dat.gz: Number of segments in each annotation

lengthDistributionOfSegments.dat.gz: Length distribution of segments in each annnotation

genomeCoverage.dat.gz: Total genome coverage of regions in each annoation

overlapFraction.dat.gz: Basepair level overlap between two pairs of annotations

annotations_chromatinStateOverlap.dat.gz: Overlap of annotations with chromatin states

information.fourcells_enhancer.dat.gz: Information content of the mean enhancer chromatin posterior probability for annotation segments across four cell types

information.fourcells_promoter.dat.gz: Information content of the mean promoter chromatin posterior probability for annotation segments across four cell types

gwas_enrichment_stats.txt.gz: Enrichment of GWAS SNPs in annotations

GTEx_v7.ESI_medianTPM_min0.15.dat.gz : ESI for genes across 50 tissues

gtexv7_lcleqtl.enrichment.dat.gz: Enrichment of GTEx v7 LCL eQTL in annotations

gtexv7_lcleqtl.binned_lclESI.enrichment.dat.gz: Enrichment of GTEx v7 LCL eQTL binned by lclESI in annotations

K562.gtexv7_bloodeqtl.fdr0.1.prune0.8.maf0.2.ld0.99.annotations.dat.gz:  GTEx v7 blood eQTL effect sizes in K562 annotations    

GM12878.gtexv7_lcleqtl.fdr0.1.prune0.8.maf0.2.ld0.99.annotations.dat.gz: GTEx v7 LCL eQTL effect sizes in GM12878 annotations

GM12878.dsqtl.prune0.8.maf0.2.ld0.99.annotations.dat.gz : GM12878 DNase QTL effect sizes in GM12878 annotations

GM12878.allelicBiasResults.FracRef.downsampled30.annotations.withMAF.dat.gz: GM12878 ATAC-seq allelic bias effect sizes in GM12878 annotations