"Sample" "ROI" "Type" "AOISurfaceArea" "AOINucleiCount" "RawReads" "DeduplicatedReads" "TrimmedReads" "StitchedReads" "AlignedReads" "SequencingSaturation" "technical_replicate" "Resection" "tcells"
"1" "6" "6_001" "Original" "138348.777803" "744.000000" "2022229" "434992" "2012270.0" "2000272.0" "1888850" "78.48947868910989" "No" "Recurrent" 0
"2" "6" "6_002" "Original" "58370.455161" "110.000000" "214167" "47206" "213070.0" "211757.0" "201523" "77.95832224385643" "No" "Recurrent" 10
"3" "6" "6_003" "Original" "243613.282600" "1122.000000" "2385998" "607479" "2372318.0" "2357062.0" "2231931" "74.53983616080147" "No" "Recurrent" 4
"4" "6" "6_004" "Original" "340763.182985" "701.000000" "3283807" "585488" "3157657.0" "3138893.0" "2987019" "82.1704503340178" "No" "Primary" 0
"5" "6" "6_005" "Original" "289158.723105" "745.000000" "2375812" "473045" "2363400.0" "2349366.0" "2240037" "80.08912321345292" "No" "Primary" 12
"6" "6" "6_006" "Original" "133822.442665" "507.000000" "4060842" "650475" "4042114.0" "4018411.0" "3763886" "83.98177028310879" "No" "Recurrent" 8
"7" "6" "6_007" "Original" "183459.450439" "320.000000" "405290" "68037" "403134.0" "400711.0" "379155" "83.21276123269757" "No" "Control" 2
"8" "6" "6_008" "Original" "334999.002524" "771.000000" "3194366" "559405" "3179543.0" "3162254.0" "3012088" "82.48776126467662" "No" "Primary" 3
"9" "6" "6_009" "Original" "340763.182985" "779.000000" "2610808" "528919" "2542036.0" "2525674.0" "2405543" "79.741175911825" "No" "Primary" 10
"10" "6" "6_010" "Original" "340763.182985" "612.000000" "2241517" "498790" "2231714.0" "2219651.0" "2116845" "77.74765928609955" "No" "Primary" 2
"11" "6" "6_011" "Original" "340763.182985" "850.000000" "2343699" "543593" "2322578.0" "2238428.0" "2135794" "76.80619396944745" "No" "Primary" 0
"12" "6" "6_012" "Original" "328392.379630" "789.000000" "3575731" "659912" "3558314.0" "3537868.0" "3361251" "81.5446967347376" "No" "Primary" 11
"13" "4" "4_001" "Original" "265343.548075" "1344.000000" "7041065" "1014521" "7010646.0" "6963776.0" "6632369" "85.59137005552428" "No" "Recurrent" 9
"14" "4" "4_002" "Original" "216351.360975" "976.000000" "6801478" "1078762" "6349544.0" "6308567.0" "5996743" "84.13930031090301" "No" "Recurrent" 18
"15" "4" "4_003" "Original" "334157.197581" "1718.000000" "14480888" "1757746" "1.4265193E7" "1.4175202E7" "13487998" "87.86161456396873" "Yes" "Recurrent" 28
"16" "4" "4_004" "Original" "340763.182985" "1933.000000" "9686813" "1183001" "9644470.0" "9583615.0" "9128162" "87.78751071172738" "No" "Recurrent" 16
"17" "4" "4_005" "Original" "374594.593738" "1310.000000" "13140900" "1628426" "1.3081175E7" "1.2995594E7" "12354467" "87.60795683705074" "No" "Recurrent" 21
"18" "4" "4_006" "Original" "330888.788686" "1182.000000" "10773305" "1242964" "1.0725466E7" "1.0656519E7" "10145982" "88.46255629075756" "No" "Recurrent" 19
"19" "4" "4_007" "Original" "461988.991624" "998.000000" "14099183" "1777640" "1.403285E7" "1.3942541E7" "13297682" "87.39189355865513" "No" "Primary" 0
"20" "4" "4_008" "Original" "455396.393500" "3445.000000" "12939946" "1630720" "1.2879068E7" "1.2799298E7" "12214104" "87.39778357653115" "No" "Primary" 0
"21" "4" "4_009" "Original" "486761.516577" "892.000000" "17967965" "2075436" "1.7878264E7" "1.7763897E7" "16935818" "88.44924286083594" "Yes" "Primary" 0
"22" "4" "4_010" "Original" "491221.393431" "1481.000000" "14848375" "1884622" "1.4783471E7" "1.4691019E7" "14011870" "87.30755385690352" "Yes" "Primary" 0
"23" "4" "4_011" "Original" "487747.234786" "2193.000000" "22947855" "3188414" "2.2846293E7" "2.2710004E7" "21729970" "86.10582993486756" "Yes" "Primary" 0
"24" "4" "4_012" "Original" "487824.371020" "3395.000000" "19608436" "2431988" "1.9525749E7" "1.940271E7" "18465748" "87.59723620996596" "No" "Primary" 0
"25" "1" "1_001" "Original" "340763.182985" "960.000000" "7951384" "1211625" "7916667.0" "7865072.0" "7490376" "84.76208670088126" "Yes" "Recurrent" 3
"26" "1" "1_002" "Original" "290386.846712" "1069.000000" "9489624" "1271946" "9452407.0" "9394815.0" "8936416" "86.59645524416985" "No" "Recurrent" 5
"27" "1" "1_003" "Original" "340763.182985" "1014.000000" "11595394" "1537234" "1.1543886E7" "1.1468419E7" "10915281" "86.74271870365078" "Yes" "Recurrent" 21
"28" "1" "1_004" "Original" "231634.535315" "896.000000" "8662384" "1089480" "8623632.0" "8568578.0" "8148815" "87.42286188190226" "Yes" "Recurrent" 8
"29" "1" "1_005" "Original" "244328.227124" "1029.000000" "10312503" "1265958" "1.015558E7" "1.0091288E7" "9594786" "87.7240472075499" "Yes" "Recurrent" 5
"30" "1" "1_006" "Original" "320965.785809" "1196.000000" "7549312" "987351" "7516693.0" "7468067.0" "7103059" "86.92131150494244" "Yes" "Recurrent" 4
"31" "1" "1_007" "Original" "330888.788686" "843.000000" "7709329" "968143" "7676643.0" "7628299.0" "7275987" "87.44192912249562" "Yes" "Primary" 1
"32" "1" "1_008" "Original" "330888.788686" "1284.000000" "9035683" "1058603" "8999075.0" "8943669.0" "8515147" "88.28419500772658" "Yes" "Primary" 5
"33" "1" "1_009" "Original" "330888.788686" "892.000000" "4884506" "570036" "4864630.0" "4835628.0" "4609224" "88.32971031256794" "Yes" "Primary" 2
"34" "1" "1_010" "Original" "189035.890229" "565.000000" "4809092" "621609" "4789768.0" "4759156.0" "4535491" "87.07429593777786" "No" "Primary" 3
"35" "1" "1_011" "Original" "163438.135060" "647.000000" "3228651" "434562" "3215853.0" "3195567.0" "3044927" "86.54044676863495" "No" "Primary" 1
"36" "1" "1_012" "Original" "330888.788686" "910.000000" "5026739" "699627" "5004634.0" "4973082.0" "4728191" "86.08189126190956" "Yes" "Primary" 0
"37" "3" "3_001" "Original" "211152.952485" "501.000000" "3640460" "570597" "3623192.0" "3599167.0" "3374987" "84.32623899177575" "No" "Recurrent" 13
"38" "3" "3_002" "Original" "285856.367892" "1082.000000" "7966372" "1093310" "7918154.0" "7869323.0" "7380860" "86.27593589654111" "Yes" "Recurrent" 60
"39" "3" "3_003" "Original" "340763.182985" "820.000000" "9700176" "1259735" "9660423.0" "9598618.0" "9008834" "87.0132768725021" "No" "Recurrent" 66
"40" "3" "3_004" "Original" "309227.212710" "1160.000000" "8157702" "1031799" "8121762.0" "8064035.0" "7556712" "87.35184246740074" "No" "Recurrent" 94
"41" "3" "3_005" "Original" "220249.131423" "700.000000" "6868889" "868279" "6840436.0" "6800717.0" "6358186" "87.35925125591635" "No" "Recurrent" 8
"42" "3" "3_006" "Original" "224126.661577" "856.000000" "7355477" "1009892" "7326517.0" "7281656.0" "6819820" "86.2702038222674" "No" "Recurrent" 78
"43" "3" "3_007" "Original" "384230.885692" "314.000000" "4012393" "562954" "3991591.0" "3965543.0" "3770445" "85.96961962599377" "Yes" "Primary" 5
"44" "3" "3_008" "Original" "222824.907927" "174.000000" "3061432" "367524" "3048852.0" "3030742.0" "2882064" "87.99502977691486" "Yes" "Primary" 2
"45" "3" "3_009" "Original" "273394.881649" "204.000000" "3846167" "555713" "3785746.0" "3762496.0" "3573277" "85.55151141383097" "Yes" "Primary" 4
"46" "3" "3_010" "Original" "325679.224129" "265.000000" "6050912" "792631" "6024317.0" "5983300.0" "5694257" "86.90063580498278" "Yes" "Primary" 11
"47" "3" "3_011" "Original" "256484.993365" "228.000000" "5137238" "685233" "4891825.0" "4860582.0" "4623075" "86.66145115332402" "Yes" "Primary" 18
"48" "3" "3_012" "Original" "340763.182985" "462.000000" "7840292" "1087965" "7807788.0" "7760523.0" "7357683" "86.1234122402584" "No" "Primary" 6
"49" "5" "5_001" "Original" "515097.926829" "1085.000000" "2690058" "576562" "2675890.0" "2659229.0" "2530075" "78.56693052714849" "No" "Primary" 2
"50" "5" "5_002" "Original" "335834.751317" "847.000000" "3022942" "570110" "3008169.0" "2991056.0" "2839567" "81.14055777451237" "No" "Primary" 4
"51" "5" "5_003" "Original" "230137.709864" "408.000000" "2032730" "353515" "2023268.0" "2011994.0" "1912917" "82.60885607040778" "No" "Primary" 3
"52" "5" "5_004" "Original" "515097.926829" "878.000000" "4262383" "915836" "4237524.0" "4209228.0" "4006924" "78.51352166147434" "No" "Primary" 0
"53" "5" "5_005" "Original" "515097.926829" "817.000000" "2938812" "532060" "2772382.0" "2756282.0" "2622816" "81.89540535427241" "No" "Primary" 0
"54" "5" "5_006" "Original" "515097.926829" "1026.000000" "2667917" "518894" "2652506.0" "2636166.0" "2510246" "80.5505943400788" "No" "Primary" 1
"55" "5" "5_007" "Original" "340763.182985" "565.000000" "2081486" "370599" "2071447.0" "2059292.0" "1949912" "82.19546035860918" "No" "Recurrent" 1
"56" "5" "5_008" "Original" "340763.182985" "715.000000" "3317927" "585471" "3301628.0" "3281170.0" "3102834" "82.35431340110858" "No" "Recurrent" 10
"57" "5" "5_009" "Original" "515623.536959" "848.000000" "3275996" "630545" "3259948.0" "3240406.0" "3070504" "80.75257112646047" "No" "Recurrent" 2
"58" "5" "5_010" "Original" "78316.387400" "245.000000" "799243" "170584" "795220.0" "790452.0" "749861" "78.65680400078574" "No" "Recurrent" 0
"59" "5" "5_011" "Original" "118466.435146" "503.000000" "2167711" "432223" "2153527.0" "2131565.0" "2022388" "80.0608568208585" "No" "Recurrent" 4
"60" "5" "5_012" "Original" "515623.536959" "1058.000000" "4070958" "814520" "3859143.0" "3837147.0" "3650470" "79.99193310272422" "No" "Primary" 12
"61" "2" "2_001" "Original" "261149.982479" "677.000000" "9228020" "1136972" "9186862.0" "9116565.0" "8544611" "87.6791337686741" "Yes" "Primary" 13
"62" "2" "2_002" "Original" "344295.512551" "767.000000" "7135054" "962039" "7103986.0" "7058294.0" "6652875" "86.51672433032742" "Yes" "Primary" 46
"63" "2" "2_003" "Original" "269170.397810" "546.000000" "5003240" "691830" "4961432.0" "4927676.0" "4657040" "86.17236031051878" "Yes" "Primary" 20
"64" "2" "2_004" "Original" "330888.788686" "808.000000" "7915314" "1085355" "7789892.0" "7735934.0" "7304054" "86.28790974053588" "No" "Primary" 15
"65" "2" "2_005" "Original" "330888.788686" "863.000000" "6309915" "932667" "6262616.0" "6224197.0" "5870794" "85.21902434501891" "Yes" "Primary" 22
"66" "2" "2_006" "Original" "330888.788686" "753.000000" "9457916" "1145758" "9416852.0" "9354148.0" "8828329" "87.8857245084435" "Yes" "Primary" 23
"67" "2" "2_007" "Original" "330888.788686" "1373.000000" "8691643" "1160064" "8656276.0" "8601262.0" "8151000" "86.65311034979233" "Yes" "Recurrent" 33
"68" "2" "2_008" "Original" "349654.727779" "2107.000000" "13146769" "1821857" "1.3091433E7" "1.3009343E7" "12286362" "86.14216922804378" "Yes" "Recurrent" 29
"69" "2" "2_009" "Original" "340763.182985" "1136.000000" "5225554" "651745" "5147636.0" "5111368.0" "4805537" "87.52773390151552" "No" "Recurrent" 54
"70" "2" "2_010" "Original" "205276.255119" "1013.000000" "4082294" "524406" "3830277.0" "3803319.0" "3613080" "87.15413441560064" "Yes" "Recurrent" 14
"71" "2" "2_011" "Original" "408167.343108" "2056.000000" "3385467" "940027" "3298999.0" "3277175.0" "3087888" "72.23346143973637" "Yes" "Recurrent" 60
"72" "2" "2_012" "Original" "336851.069023" "1478.000000" "11180881" "1672005" "1.1136725E7" "1.1067778E7" "10444844" "85.04585640433879" "Yes" "Recurrent" 28
"73" "2" "2_001" "Replicate" "240472.212242" "627.000000" "5919949" "897869" "5888470.0" "5850492.0" "3785585" "84.83316325866997" "Yes" "Primary" NA
"74" "2" "2_002" "Replicate" "312872.696670" "681.000000" "7079082" "898555" "7040863.0" "6995013.0" "4543908" "87.30689939740775" "Yes" "Primary" NA
"75" "2" "2_003" "Replicate" "258207.649486" "530.000000" "5274762" "716818" "4951723.0" "4922899.0" "3104417" "86.41042003411718" "Yes" "Primary" NA
"76" "2" "2_004" "Replicate" "330888.788686" "903.000000" "5292243" "630641" "5261557.0" "5229860.0" "3571473" "88.08367265070784" "No" "Primary" NA
"77" "2" "2_005" "Replicate" "330888.788686" "836.000000" "5409199" "794292" "5102257.0" "5071219.0" "3436354" "85.31590351917168" "Yes" "Primary" NA
"78" "2" "2_006" "Replicate" "330888.788686" "746.000000" "8250571" "1074583" "8204927.0" "8151583.0" "5645419" "86.97565295783771" "Yes" "Primary" NA
"79" "2" "2_007" "Replicate" "330888.788686" "1572.000000" "8454353" "1111793" "8386388.0" "8333932.0" "5571380" "86.84946086353385" "Yes" "Recurrent" NA
"80" "2" "2_008" "Replicate" "198703.737916" "1231.000000" "4392273" "677186" "4236227.0" "4210247.0" "2835212" "84.58233356624235" "Yes" "Recurrent" NA
"81" "2" "2_009" "Replicate" "205908.326003" "1061.000000" "3247752" "444990" "3231462.0" "3212451.0" "2302919" "86.29852279361232" "No" "Recurrent" NA
"82" "2" "2_010" "Replicate" "323582.521017" "1465.000000" "4077484" "516526" "4056371.0" "4032039.0" "2905565" "87.33223723256793" "Yes" "Recurrent" NA
"83" "2" "2_011" "Replicate" "301809.543743" "1508.000000" "4323331" "711285" "4301333.0" "4275738.0" "2944781" "83.54775519154096" "Yes" "Recurrent" NA
"84" "2" "2_012" "Replicate" "359977.436600" "1895.000000" "9781437" "1510607" "9400124.0" "9340319.0" "6464926" "84.55638982288593" "Yes" "Recurrent" NA
"85" "3" "3_001" "Replicate" "206657.854335" "638.000000" "3404707" "801998" "3388254.0" "3367094.0" "3038792" "76.44443413192383" "No" "Recurrent" NA
"86" "3" "3_002" "Replicate" "250731.809598" "846.000000" "5657614" "1153570" "5629473.0" "5596026.0" "4873145" "79.61030922222689" "Yes" "Recurrent" NA
"87" "3" "3_003" "Replicate" "340763.182985" "1160.000000" "7867067" "1440727" "7827600.0" "7778598.0" "6491246" "81.6866056943458" "No" "Recurrent" NA
"88" "3" "3_004" "Replicate" "209462.170841" "916.000000" "4188152" "841302" "4166700.0" "4140750.0" "3721833" "79.91233364978157" "No" "Recurrent" NA
"89" "3" "3_005" "Replicate" "80320.813901" "339.000000" "2183180" "405793" "2171798.0" "2158738.0" "1943897" "81.41275570498081" "No" "Recurrent" NA
"90" "3" "3_006" "Replicate" "213240.571371" "834.000000" "6806118" "1219844" "6771969.0" "6729843.0" "5883762" "82.07724285708828" "No" "Recurrent" NA
"91" "3" "3_007" "Replicate" "363427.530015" "351.000000" "3233335" "530114" "3212328.0" "3191388.0" "2620779" "83.60473010065459" "Yes" "Primary" NA
"92" "3" "3_008" "Replicate" "185612.730748" "139.000000" "1564283" "269573" "1555879.0" "1546112.0" "1285614" "82.76699292902883" "Yes" "Primary" NA
"93" "3" "3_009" "Replicate" "273394.881649" "237.000000" "3253970" "545759" "3234448.0" "3215047.0" "2617723" "83.22790314600319" "Yes" "Primary" NA
"94" "3" "3_010" "Replicate" "230772.171333" "241.000000" "3210310" "567795" "3039930.0" "3021474.0" "2467060" "82.31339029564123" "Yes" "Primary" NA
"95" "3" "3_011" "Replicate" "279428.401443" "319.000000" "4255385" "786798" "4231642.0" "4205520.0" "3392396" "81.5105331244999" "Yes" "Primary" NA
"96" "3" "3_012" "Replicate" "198857.054151" "425.000000" "1634367" "263749" "1626512.0" "1616654.0" "1484308" "83.8623148901073" "No" "Control" NA
"97" "4" "4_001" "Replicate" "400766.089497" "849.000000" "5714529" "1095550" "5657773.0" "5622484.0" "4216617" "80.82869121847138" "No" "Recurrent" NA
"98" "4" "4_002" "Replicate" "284841.484537" "1295.000000" "11515648" "1493318" "1.1459256E7" "1.1388566E7" "7876366" "87.03227121912722" "No" "Recurrent" NA
"99" "4" "4_003" "Replicate" "334157.197581" "1660.000000" "8601069" "1552105" "8116897.0" "8064630.0" "5533598" "81.95451053816683" "Yes" "Recurrent" NA
"100" "4" "4_004" "Replicate" "223215.370273" "1119.000000" "8419002" "1230100" "8371614.0" "8318646.0" "5713644" "85.38900453996804" "No" "Recurrent" NA
"101" "4" "4_005" "Replicate" "275421.301539" "1297.000000" "6078313" "1033254" "6046112.0" "6006282.0" "4282971" "83.00097411897018" "No" "Recurrent" NA
"102" "4" "4_006" "Replicate" "330888.788686" "1100.000000" "7694131" "1078425" "7410154.0" "7364761.0" "5298314" "85.98379726053534" "No" "Recurrent" NA
"103" "4" "4_007" "Replicate" "399558.046810" "1352.000000" "9453504" "1640431" "9403656.0" "9341305.0" "7877864" "82.64737604173014" "No" "Primary" NA
"104" "4" "4_008" "Replicate" "455396.393500" "1058.000000" "12071290" "2254480" "1.1989305E7" "1.1914849E7" "10219396" "81.32361992794473" "No" "Primary" NA
"105" "4" "4_009" "Replicate" "486761.516577" "703.000000" "10196482" "1601129" "1.0144615E7" "1.0082336E7" "8287383" "84.29724095035915" "Yes" "Primary" NA
"106" "4" "4_010" "Replicate" "491221.393431" "896.000000" "8694439" "1852647" "8651873.0" "8599550.0" "7105799" "78.6915866567124" "Yes" "Primary" NA
"107" "4" "4_011" "Replicate" "487747.234786" "759.000000" "10736083" "2481200" "1.0681805E7" "1.0616683E7" "8672759" "76.88915035399782" "Yes" "Primary" NA
"108" "4" "4_012" "Replicate" "487824.371020" "816.000000" "11324631" "2013419" "1.1267204E7" "1.1195746E7" "9293232" "82.22088649069448" "No" "Primary" NA
"109" "1" "1_001" "Replicate" "340763.182985" "1010.000000" "6727580" "894605" "6694195.0" "6651193.0" "3945997" "86.70242494329314" "Yes" "Recurrent" NA
"110" "1" "1_002" "Replicate" "260035.172638" "313.000000" "1472538" "244854" "1464557.0" "1452947.0" "931456" "83.3719741018568" "No" "Recurrent" NA
"111" "1" "1_003" "Replicate" "340763.182985" "1107.000000" "11103230" "1301328" "1.1049162E7" "1.0983842E7" "5855508" "88.27973481590492" "Yes" "Recurrent" NA
"112" "1" "1_004" "Replicate" "270827.392509" "1113.000000" "8973863" "1082179" "8928650.0" "8876759.0" "4505330" "87.94076753790424" "Yes" "Recurrent" NA
"113" "1" "1_005" "Replicate" "296214.457383" "1272.000000" "12796902" "1286597" "1.2732984E7" "1.2659625E7" "6325901" "89.94602756198337" "Yes" "Recurrent" NA
"114" "1" "1_006" "Replicate" "377614.381710" "1374.000000" "12811854" "1177593" "1.2747863E7" "1.2671679E7" "6163798" "90.80856681632494" "Yes" "Recurrent" NA
"115" "1" "1_007" "Replicate" "330888.788686" "839.000000" "8868040" "1035013" "8605677.0" "8552472.0" "5326370" "88.32872878336137" "Yes" "Primary" NA
"116" "1" "1_008" "Replicate" "330888.788686" "1215.000000" "7501010" "1184907" "7455562.0" "7411681.0" "5300373" "84.20336727987298" "Yes" "Primary" NA
"117" "1" "1_009" "Replicate" "330888.788686" "950.000000" "6750907" "967138" "6718206.0" "6680432.0" "4820160" "85.67395462565253" "Yes" "Primary" NA
"118" "1" "1_010" "Replicate" "330888.788686" "540.000000" "7890022" "972992" "7839853.0" "7783875.0" "4851885" "87.66806987356944" "No" "Primary" NA
"119" "1" "1_011" "Replicate" "330888.788686" "989.000000" "5653217" "814479" "5623746.0" "5587193.0" "3460830" "85.5926457448918" "No" "Primary" NA
"120" "1" "1_012" "Replicate" "330888.788686" "874.000000" "5806747" "793099" "5729267.0" "5696704.0" "3273583" "86.34176760241147" "Yes" "Primary" NA