There is a newer version of the record available.

Published November 8, 2024 | Version v1
Dataset Open

The single-cell spatial landscape of stage III colorectal cancers

Creators

  • 1. ROR icon Stanford Medicine

Description

The Seurat and Scanpy objects for single-cell data, along with a CSV file containing coordinates and cell types for all single cells, have been deposited. Additionally, the original IMC image data has also been uploaded.

The Seurat object is: 20220215_COAD_cancer_control_umapped_annotated.rds

The Scanpy object is: 20220215_COAD_cancer_control_umapped_annotated.h5ad

 

We added H&E images with pathologist annotations in version 2.

Files

single_cell_phenotypes_and_coordinates.csv

Files (7.5 GB)

Name Size Download all
md5:eba1b81f98a21e91a6b47b8c73af399d
817.9 MB Download
md5:13d5a8af6dc347e120bb8312a37d8b17
257.3 MB Download
md5:90521c1f2c8f96e65c76fee64ce4a0c0
6.3 GB Download
md5:669e3d63dd90add11d65044b1858ff3f
104.2 MB Preview Download

Additional details

Software

Repository URL
https://github.com/BiomedicalMachineLearning/CRC_Spatial_Landscape/tree/main