Table 1. Model types for protein-coding gene analysis configured by IQtree ModelFinder through ultrafast bootstrap (10,000 replicates) for the phylogenetic tree with 3 codons.
Model Type Gene
ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB
GTR+F+G4 1st pos 1st pos 1st pos 1st pos 1st pos
TPM3u+F+I+G4 2nd pos 2nd pos 2nd pos 2nd pos 2nd pos 2rd pos
TIM+F+I+G4 3rd pos 3rd pos 3rd pos
TIM2+F+I+G4 1st pos 1st pos, 2nd pos 1st pos 1st pos 1st pos
TPM3u+F+I+G4 2nd pos 2nd pos 2nd pos 2nd pos 2nd pos
TIM2e+I+G4 1st pos 1st pos
TIM2+F+I+G4 3rd pos 3rd pos 3rd pos 3rd pos
TN+F+I+G4 3rd pos 3rd pos 3rd pos 3rd pos 3rd pos
HKY+F+I+G4 1st pos, 2nd pos
HKY+F+G4 3rd pos