FZJ-INM1-BDA/siibra-api-v0.3.19-rc-3.zip
FZJ-INM1-BDA-siibra-api-e2b5330
.coveragerc
155 Bytes
.docker
docker-compose.yaml
681 Bytes
restart.sh
297 Bytes
.github
workflows
composite-set-k8s-cred
action.yml
461 Bytes
deploy-helm.yml
2.6 kB
docker-img.yml
8.9 kB
ebrains_sync.yml
493 Bytes
github-actions.yml
2.3 kB
.gitignore
160 Bytes
.helm
README.md
659 Bytes
adhoc
certificate.yml
1.8 kB
configmaps-siibra-api-common.yml
524 Bytes
copy-cache.yaml
665 Bytes
cronjob-kubectl-top-pod.yaml
1.2 kB
deployment-redis.yaml
692 Bytes
deprecated-hostname.yaml
1.4 kB
example-secret-kubeconfig.yaml
623 Bytes
pvc-data-volume.yml
230 Bytes
pvc-log-volume.yml
373 Bytes
service-cache-redis.yml
187 Bytes
v1v2.yaml
3.6 kB
warm-cache-v4.yaml
773 Bytes
warm-cache.yaml
751 Bytes
siibra-api
.helmignore
349 Bytes
Chart.yaml
1.1 kB
templates
NOTES.txt
1.8 kB
_helpers.tpl
2.5 kB
deployment-server.yaml
2.8 kB
deployment-worker-v4.yaml
4.3 kB
deployment-worker.yaml
3.3 kB
hpa.yaml
1.1 kB
ingress.yaml
2.1 kB
service.yaml
387 Bytes
serviceaccount.yaml
395 Bytes
tests
test-connection.yaml
388 Bytes
values.yaml
3.0 kB
.openshift
README.md
7.1 kB
branch-deploy-template.yml
7.2 kB
server-deploy-template.yml
3.4 kB
worker-deploy-template.yml
3.7 kB
.readthedocs.yaml
611 Bytes
Dockerfile
471 Bytes
LICENSE
11.4 kB
README.md
2.0 kB
VERSION
6 Bytes
api
common
__init__.py
259 Bytes
data_handlers
__init__.py
214 Bytes
compounds
__init__.py
24 Bytes
download.py
6.3 kB
core
__init__.py
88 Bytes
atlas.py
780 Bytes
parcellation.py
780 Bytes
region.py
2.4 kB
space.py
771 Bytes
features
__init__.py
20 Bytes
types.py
7.0 kB
vocabularies
__init__.py
18 Bytes
gene.py
610 Bytes
decorators.py
5.9 kB
exceptions.py
729 Bytes
logger.py
2.1 kB
siibra_api_typing.py
107 Bytes
storage.py
732 Bytes
timer.py
1.3 kB
models
__init__.py
939 Bytes
_commons.py
3.8 kB
_retrieval
__init__.py
0 Bytes
datasets.py
727 Bytes
core
__init__.py
0 Bytes
_concept.py
638 Bytes
atlas.py
545 Bytes
parcellation.py
1.4 kB
region.py
1.2 kB
space.py
1.3 kB
features
__init__.py
60 Bytes
_basetypes
__init__.py
177 Bytes
cortical_profiles.py
316 Bytes
feature.py
658 Bytes
regional_connectivity.py
369 Bytes
tabular.py
426 Bytes
volume_of_interest.py
325 Bytes
anchor.py
1.2 kB
dataset
ebrains.py
194 Bytes
molecular
gene_expression.py
188 Bytes
receptor_density_fingerprint.py
298 Bytes
intents
__init__.py
0 Bytes
base.py
134 Bytes
colorization.py
342 Bytes
locations
__init__.py
0 Bytes
boundingbox.py
805 Bytes
location.py
564 Bytes
point.py
326 Bytes
openminds
SANDS
__init__.py
0 Bytes
v3
__init__.py
0 Bytes
atlas
__init__.py
0 Bytes
atlasAnnotation.py
3.3 kB
brainAtlas.py
3.3 kB
brainAtlasVersion.py
8.3 kB
commonCoordinateSpace.py
3.8 kB
parcellationEntity.py
1.6 kB
parcellationEntityVersion.py
7.3 kB
parcellationTerminology.py
1.1 kB
parcellationTerminologyVersion.py
1.1 kB
miscellaneous
__init__.py
0 Bytes
coordinatePoint.py
1.6 kB
qualitativeRelationAssessment.py
1.1 kB
quantitativeRelationAssessment.py
2.4 kB
non-atlas
__init__.py
0 Bytes
customAnatomicalEntity.py
6.6 kB
customAnnotation.py
3.5 kB
customCoordinateSpace.py
2.3 kB
__init__.py
0 Bytes
_populate_static_models.py
3.9 kB
base.py
476 Bytes
computation
__init__.py
0 Bytes
v1
__init__.py
0 Bytes
dataAnalysis.py
3.1 kB
environment.py
1.3 kB
hardwareSystem.py
961 Bytes
launchConfiguration.py
1.3 kB
optimization.py
3.1 kB
simulation.py
3.1 kB
softwareAgent.py
882 Bytes
visualization.py
3.1 kB
workflowExecution.py
668 Bytes
controlledTerms
__init__.py
0 Bytes
v1
UBERONParcellation.py
2.1 kB
__init__.py
0 Bytes
actionStatusType.py
2.1 kB
ageCategory.py
2.1 kB
anatomicalAxesOrientation.py
2.1 kB
atlasType.py
2.1 kB
biologicalOrder.py
2.1 kB
biologicalSex.py
2.1 kB
breedingType.py
2.1 kB
cellType.py
2.1 kB
contributionType.py
2.1 kB
criteriaQualityType.py
2.1 kB
dataType.py
2.1 kB
deviceType.py
2.1 kB
disease.py
2.1 kB
diseaseModel.py
2.1 kB
ethicsAssessment.py
2.1 kB
experimentalApproach.py
2.1 kB
fileBundleGrouping.py
2.1 kB
fileRepositoryType.py
2.1 kB
fileUsageRole.py
2.1 kB
geneticStrainType.py
2.1 kB
handedness.py
2.1 kB
language.py
2.1 kB
laterality.py
2.1 kB
metaDataModelType.py
2.1 kB
modelAbstractionLevel.py
2.1 kB
modelScope.py
2.1 kB
molecularEntity.py
2.1 kB
operatingDevice.py
2.1 kB
operatingSystem.py
2.1 kB
organ.py
2.1 kB
preparationType.py
2.1 kB
productAccessibility.py
2.1 kB
programmingLanguage.py
2.1 kB
qualitativeOverlap.py
2.1 kB
semanticDataType.py
2.1 kB
service.py
2.1 kB
softwareApplicationCategory.py
2.1 kB
softwareFeature.py
2.1 kB
species.py
2.1 kB
stimulationApproach.py
2.1 kB
stimulusType.py
2.1 kB
subjectAttribute.py
2.1 kB
technique.py
2.1 kB
termSuggestion.py
2.6 kB
terminology.py
2.1 kB
tissueSampleAttribute.py
2.1 kB
tissueSampleType.py
2.1 kB
typeOfUncertainty.py
2.1 kB
unitOfMeasurement.py
2.1 kB
core
__init__.py
0 Bytes
v4
__init__.py
0 Bytes
actors
__init__.py
0 Bytes
affiliation.py
1.1 kB
contactInformation.py
626 Bytes
contribution.py
910 Bytes
organization.py
1.5 kB
person.py
2.1 kB
data
__init__.py
0 Bytes
contentType.py
2.0 kB
contentTypePattern.py
767 Bytes
copyright.py
938 Bytes
file.py
3.5 kB
fileBundle.py
2.9 kB
filePathPattern.py
655 Bytes
fileRepository.py
3.5 kB
fileRepositoryStructure.py
850 Bytes
hash.py
825 Bytes
license.py
1.3 kB
serviceLink.py
979 Bytes
miscellaneous
DOI.py
694 Bytes
GRIDID.py
705 Bytes
ISBN.py
693 Bytes
ORCID.py
716 Bytes
RORID.py
695 Bytes
RRID.py
712 Bytes
SWHID.py
774 Bytes
URL.py
494 Bytes
__init__.py
0 Bytes
funding.py
1.4 kB
quantitativeValue.py
1.3 kB
quantitativeValueRange.py
1.1 kB
stockNumber.py
731 Bytes
products
__init__.py
0 Bytes
dataset.py
2.4 kB
datasetVersion.py
8.4 kB
metaDataModel.py
2.5 kB
metaDataModelVersion.py
7.6 kB
model.py
3.1 kB
modelVersion.py
7.5 kB
project.py
1.7 kB
software.py
2.5 kB
softwareVersion.py
9.1 kB
research
__init__.py
0 Bytes
behavioralProtocol.py
1.3 kB
numericalParameter.py
2.1 kB
parameterSet.py
2.7 kB
protocol.py
1.2 kB
protocolExecution.py
4.9 kB
stimulation.py
1.1 kB
strain.py
3.4 kB
stringParameter.py
759 Bytes
subject.py
2.0 kB
subjectGroup.py
2.2 kB
subjectGroupState.py
4.7 kB
subjectState.py
4.7 kB
tissueSample.py
2.8 kB
tissueSampleCollection.py
3.1 kB
tissueSampleCollectionState.py
4.3 kB
tissueSampleState.py
4.3 kB
util
__init__.py
40 Bytes
numpyarray.py
1.6 kB
vocabularies
__init__.py
0 Bytes
base.py
150 Bytes
genes.py
119 Bytes
volumes
__init__.py
51 Bytes
parcellationmap.py
427 Bytes
volume.py
872 Bytes
serialization
__init__.py
263 Bytes
_common.py
2.1 kB
_retrieval
__init__.py
22 Bytes
datasets.py
1.6 kB
core
__init__.py
98 Bytes
_concept.py
779 Bytes
atlas.py
3.1 kB
parcellation.py
3.2 kB
region.py
6.4 kB
space.py
1.3 kB
features
__init__.py
53 Bytes
_basetypes
__init__.py
117 Bytes
cortical_profiles.py
1.2 kB
feature.py
816 Bytes
regional_connectivity.py
1.4 kB
tabular.py
1.0 kB
volume_of_interest.py
990 Bytes
anchor.py
1.6 kB
dataset
__init__.py
21 Bytes
ebrains.py
750 Bytes
molecular
__init__.py
42 Bytes
gene_expression.py
295 Bytes
receptor_density_fingerprint.py
605 Bytes
locations
__init__.py
43 Bytes
boundingbox.py
803 Bytes
location.py
483 Bytes
point.py
1.1 kB
util
__init__.py
3.8 kB
siibra.py
1.6 kB
volumes
__init__.py
50 Bytes
parcellationmap.py
740 Bytes
volume.py
1.8 kB
server
__init__.py
341 Bytes
api.py
13.5 kB
cache
__init__.py
715 Bytes
redis.py
4.6 kB
code_snippet.py
3.5 kB
compounds
__init__.py
149 Bytes
download.py
3.6 kB
const.py
363 Bytes
core
__init__.py
361 Bytes
atlas.py
1.2 kB
parcellation.py
1.3 kB
region.py
2.3 kB
space.py
1.2 kB
features
__init__.py
13.6 kB
util.py
1.5 kB
metrics.py
8.1 kB
util.py
3.6 kB
volcabularies
__init__.py
861 Bytes
volumes
__init__.py
155 Bytes
parcellationmap.py
5.2 kB
siibra_api_config.py
5.0 kB
worker
__init__.py
107 Bytes
app.py
379 Bytes
codemeta.json
2.2 kB
docker-compose-dev.yml
515 Bytes
docker-compose-sw.yml
1.1 kB
docker-compose.yml
383 Bytes
docs
api.common.data_handlers.md
30 Bytes
api.common.md
73 Bytes
api.models.md
90 Bytes
api.serialization.md
23 Bytes
api.server.md
60 Bytes
api.siibra_api_config.md
28 Bytes
api.worker.md
16 Bytes
architecture.caching.md
1.6 kB
architecture.overview.md
1.7 kB
architecture.throughput.md
3.8 kB
develop.example.adding_related_regions.md
6.7 kB
develop.example.adding_serialization.md
3.7 kB
develop.example.adding_vocabulary_endpoint.md
5.6 kB
develop.md
497 Bytes
index.md
437 Bytes
installation.md
1.7 kB
requirements.md
444 Bytes
run.md
2.9 kB
siibra-api.jpeg
32 Bytes
trl-service.md
4.2 kB
trl-software.md
5.2 kB
e2e_test
__init__.py
0 Bytes
regions
__init__.py
0 Bytes
test_related.py
873 Bytes
vocabularies
__init__.py
0 Bytes
test_genes.py
503 Bytes
mkdocs.yml
2.2 kB
new_api
common
__init__.py
34 Bytes
decorators.py
1.5 kB
exceptions.py
729 Bytes
logger.py
2.1 kB
storage.py
736 Bytes
data_handlers
__init__.py
0 Bytes
maps.py
4.9 kB
run_warmup.py
118 Bytes
siibra_api_config.py
4.9 kB
v3
.gitignore
5 Bytes
__init__.py
50 Bytes
data_handlers
__init__.py
17 Bytes
map
__init__.py
5.2 kB
models
__init__.py
939 Bytes
_commons.py
3.8 kB
_retrieval
__init__.py
0 Bytes
datasets.py
735 Bytes
core
__init__.py
0 Bytes
_concept.py
652 Bytes
atlas.py
559 Bytes
parcellation.py
1.4 kB
region.py
1.3 kB
space.py
1.3 kB
features
__init__.py
60 Bytes
_basetypes
__init__.py
177 Bytes
cortical_profiles.py
323 Bytes
feature.py
679 Bytes
regional_connectivity.py
383 Bytes
tabular.py
440 Bytes
volume_of_interest.py
346 Bytes
anchor.py
1.3 kB
dataset
ebrains.py
201 Bytes
molecular
gene_expression.py
195 Bytes
receptor_density_fingerprint.py
305 Bytes
intents
__init__.py
0 Bytes
base.py
141 Bytes
colorization.py
342 Bytes
locations
__init__.py
0 Bytes
boundingbox.py
805 Bytes
location.py
571 Bytes
point.py
340 Bytes
openminds
SANDS
__init__.py
0 Bytes
v3
__init__.py
0 Bytes
atlas
__init__.py
0 Bytes
atlasAnnotation.py
3.3 kB
brainAtlas.py
3.3 kB
brainAtlasVersion.py
8.3 kB
commonCoordinateSpace.py
3.8 kB
parcellationEntity.py
1.7 kB
parcellationEntityVersion.py
7.3 kB
parcellationTerminology.py
1.1 kB
parcellationTerminologyVersion.py
1.1 kB
miscellaneous
__init__.py
0 Bytes
coordinatePoint.py
1.6 kB
qualitativeRelationAssessment.py
1.1 kB
quantitativeRelationAssessment.py
2.4 kB
non-atlas
__init__.py
0 Bytes
customAnatomicalEntity.py
6.6 kB
customAnnotation.py
3.5 kB
customCoordinateSpace.py
2.3 kB
__init__.py
0 Bytes
_populate_static_models.py
3.9 kB
base.py
476 Bytes
computation
__init__.py
0 Bytes
v1
__init__.py
0 Bytes
dataAnalysis.py
3.1 kB
environment.py
1.3 kB
hardwareSystem.py
968 Bytes
launchConfiguration.py
1.3 kB
optimization.py
3.1 kB
simulation.py
3.1 kB
softwareAgent.py
889 Bytes
visualization.py
3.1 kB
workflowExecution.py
675 Bytes
controlledTerms
__init__.py
0 Bytes
v1
UBERONParcellation.py
2.1 kB
__init__.py
0 Bytes
actionStatusType.py
2.1 kB
ageCategory.py
2.1 kB
anatomicalAxesOrientation.py
2.1 kB
atlasType.py
2.1 kB
biologicalOrder.py
2.1 kB
biologicalSex.py
2.1 kB
breedingType.py
2.1 kB
cellType.py
2.1 kB
contributionType.py
2.1 kB
criteriaQualityType.py
2.1 kB
dataType.py
2.1 kB
deviceType.py
2.1 kB
disease.py
2.1 kB
diseaseModel.py
2.1 kB
ethicsAssessment.py
2.1 kB
experimentalApproach.py
2.1 kB
fileBundleGrouping.py
2.1 kB
fileRepositoryType.py
2.1 kB
fileUsageRole.py
2.1 kB
geneticStrainType.py
2.1 kB
handedness.py
2.1 kB
language.py
2.1 kB
laterality.py
2.1 kB
metaDataModelType.py
2.1 kB
modelAbstractionLevel.py
2.1 kB
modelScope.py
2.1 kB
molecularEntity.py
2.1 kB
operatingDevice.py
2.1 kB
operatingSystem.py
2.1 kB
organ.py
2.1 kB
preparationType.py
2.1 kB
productAccessibility.py
2.1 kB
programmingLanguage.py
2.1 kB
qualitativeOverlap.py
2.1 kB
semanticDataType.py
2.1 kB
service.py
2.1 kB
softwareApplicationCategory.py
2.1 kB
softwareFeature.py
2.1 kB
species.py
2.1 kB
stimulationApproach.py
2.1 kB
stimulusType.py
2.1 kB
subjectAttribute.py
2.1 kB
technique.py
2.1 kB
termSuggestion.py
2.6 kB
terminology.py
2.1 kB
tissueSampleAttribute.py
2.1 kB
tissueSampleType.py
2.1 kB
typeOfUncertainty.py
2.1 kB
unitOfMeasurement.py
2.1 kB
core
__init__.py
0 Bytes
v4
__init__.py
0 Bytes
actors
__init__.py
0 Bytes
affiliation.py
1.1 kB
contactInformation.py
633 Bytes
contribution.py
917 Bytes
organization.py
1.5 kB
person.py
2.1 kB
data
__init__.py
0 Bytes
contentType.py
2.0 kB
contentTypePattern.py
774 Bytes
copyright.py
945 Bytes
file.py
3.5 kB
fileBundle.py
2.9 kB
filePathPattern.py
662 Bytes
fileRepository.py
3.5 kB
fileRepositoryStructure.py
857 Bytes
hash.py
832 Bytes
license.py
1.3 kB
serviceLink.py
986 Bytes
miscellaneous
DOI.py
701 Bytes
GRIDID.py
712 Bytes
ISBN.py
700 Bytes
ORCID.py
723 Bytes
RORID.py
702 Bytes
RRID.py
719 Bytes
SWHID.py
781 Bytes
URL.py
501 Bytes
__init__.py
0 Bytes
funding.py
1.4 kB
quantitativeValue.py
1.3 kB
quantitativeValueRange.py
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stockNumber.py
738 Bytes
products
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0 Bytes
dataset.py
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datasetVersion.py
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metaDataModel.py
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metaDataModelVersion.py
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model.py
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modelVersion.py
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project.py
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software.py
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softwareVersion.py
9.1 kB
research
__init__.py
0 Bytes
behavioralProtocol.py
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numericalParameter.py
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parameterSet.py
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protocol.py
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protocolExecution.py
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stimulation.py
1.1 kB
strain.py
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stringParameter.py
766 Bytes
subject.py
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subjectGroup.py
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subjectGroupState.py
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subjectState.py
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tissueSample.py
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tissueSampleCollection.py
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tissueSampleCollectionState.py
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tissueSampleState.py
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util
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40 Bytes
numpyarray.py
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vocabularies
__init__.py
0 Bytes
base.py
157 Bytes
genes.py
119 Bytes
volumes
__init__.py
51 Bytes
parcellationmap.py
455 Bytes
volume.py
886 Bytes
serialization
__init__.py
1.1 kB
_common.py
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map.py
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warmup
__init__.py
283 Bytes
worker
__init__.py
350 Bytes
pytest.ini
23 Bytes
requirements
all.txt
33 Bytes
docs.txt
73 Bytes
partial-all.txt
107 Bytes
partial-worker.txt
32 Bytes
server.txt
146 Bytes
siibra.txt
22 Bytes
v4-siibra.txt
155 Bytes
v4-worker.txt
39 Bytes
worker.txt
36 Bytes
server.dockerfile
478 Bytes
server_health.py
662 Bytes
static
HBP_Primary_RGB_BlackText.png
21.4 kB
images
siibra-api.jpeg
41.2 kB
templates
doc.html
15.1 kB
error.html
1.5 kB
index.html
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stats.html
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tos.html
1.3 kB
test
__init__.py
0 Bytes
configuration
__init__.py
0 Bytes
test_ebrains_token.py
1.2 kB
core
__init__.py
0 Bytes
test_atlas_api.py
956 Bytes
test_parcellation_api.py
4.3 kB
test_regions_api.py
8.2 kB
test_siibra_api.py
1.6 kB
test_space_api.py
5.1 kB
serialization
features
molecular
test_receptor_density_fingerprint.py
631 Bytes
test_connectivity.py
1.7 kB
test_feature.py
2.1 kB
test_tabular.py
1.6 kB
test_voi.py
617 Bytes
test_atlas.py
389 Bytes
test_datasets.py
0 Bytes
test_parcellation.py
468 Bytes
test_region.py
528 Bytes
test_space.py
586 Bytes
test_volumes.py
573 Bytes
volumes
test_volume.py
803 Bytes
service
__init__.py
0 Bytes
test_request_utils.py
5.9 kB
test_app.py
8.9 kB
worker-v4.dockerfile
429 Bytes
worker.dockerfile
408 Bytes
worker_health.py
332 Bytes
worker_health_v4.py
332 Bytes