genome,domain,phylum,class,order,family,genus,species,source,assembly,accession,sample,substrate,country,origin,assign,database
GCF_004359375.1_ASM435937v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Acetilactobacillus,Acetilactobacillus jinshanensis,NCBI,RefSeq,GCF_004359375.1,Type material of Acetilactobacillus jinshanensis,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK040-1-L-48h-03F2_S66__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter aceti_B,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0007-002_Acetobacter_pasteurianus_subsp._ascendens_LMG_1591T,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter ascendens,Whon et al. 2021,complete,NA,vinegar,fruit,Netherlands,Netherlands,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0114-002_Acetobacter_cerevisiae_LMG_1625,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter cerevisiae,Whon et al. 2021,draft,NA,beer,grains,Belgium,Belgium,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2016__ERR1653130__bin.2,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter fabarum,Pasolli et al. 2020,MAG,NA,milk kefir 24 hours Day 2,dairy,France,France,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF14__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter ghanensis,Carlino et al. 2024,MAG,NA,milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK027-1-L-48h-02I4_S14__bin.10,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter indonesiensis,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeRoosJ_2020__B3M__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter lambici,Carlino et al. 2024,MAG,NA,lambic_beer,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK030-2-L-48h-03A9_S28__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter lovaniensis,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK067-1-L-48h-05C1_S71__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter malorum subsp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK022-1-L-48h-02F8_S113__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter malorum subsp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5652903__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter malorum_A,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_011516835.1_ASM1151683v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter musti,NCBI,RefSeq,GCF_011516835.1,Isolated organism,fruit,Belgium,Spain,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653126__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter okinawensis_A,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter orientalis,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0116-001_Acetobacter_orleanensis_LMG_1583,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter orleanensis,Whon et al. 2021,Unknown,NA,beer,grains,Belgium,Belgium,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653137__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter oryzifermentans,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF53__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter oryzoeni,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK001-2-L-48h-01F4_S28__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter papayae,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK032-1-L-48h-03B6_S34__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter pasteurianus,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF31__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter peroxydans,Carlino et al. 2024,MAG,NA,fermented_malted_sorghum,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK058-1-L-48h-04G6_S31__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter persici,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002738225.1_ASM273822v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter pomorum,NCBI,RefSeq,GCF_002738225.1,Type strain of Acetobacter pomorum,NA,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_001499615.1_Acetobacter_senegalensis_108B_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter senegalensis,NCBI,RefSeq,GCF_001499615.1,NA,NA,Belgium,Belgium,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653217__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 1,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK064-2-L-48h-05A5_S57__bin.10,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK050-1-L-48h-04C8_S126__bin.12,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 3,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK028-1-L-08h-02I7_S17__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 4,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967724__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 5,Carlino et al. 2024,MAG,NA,NA,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5652995__bin.9,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 6,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
CM_INJERA__injera_E2__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 7,Carlino et al. 2024,MAG,NA,teff,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967722__bin.9,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 8,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__D12__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp. 9,Carlino et al. 2024,MAG,NA,milk_kefir,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK040-2-L-48h-03F4_S68__bin.4,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter syzygii,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068302__bin.7,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter thailandicus,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001580945.1_ASM158094v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter tropicalis,NCBI,RefSeq,GCF_001580945.1,NA,NA,Belgium,Belgium,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.21,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Achromobacter,Achromobacter sp001270295,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R09.bin.5,Bacteria,Actinobacteriota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Acidipropionibacterium,Acidipropionibacterium acidipropionici,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.17,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Acidipropionibacterium,Acidipropionibacterium jensenii,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967734__bin.8,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Acidipropionibacterium,Acidipropionibacterium thoenii,Carlino et al. 2024,MAG,NA,ginger_sliced_in_2percent_brine,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.16,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Acidipropionibacterium,Acidipropionibacterium virtanenii,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004346035.1_ASM434603v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acidomonas,Acidomonas methanolica,NCBI,RefSeq,GCF_004346035.1,NA,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.18,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Acidovorax_A,Acidovorax_A valerianellae,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.14,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Acidovorax_A,Acidovorax_A wautersii,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-26.1__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter albensis,Carlino et al. 2024,MAG,NA,cheese_rind_2_t15,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB06-25__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter baumannii,Carlino et al. 2024,MAG,NA,fresh_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_111__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter fasciculus,Carlino et al. 2024,MAG,NA,salame_piacentino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB06-21__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter guillouiae,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__F06-31B__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter harbinensis,Carlino et al. 2024,MAG,NA,meat_batter,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB11-26__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter johnsonii,Carlino et al. 2024,MAG,NA,fresh_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM002_71775__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter junii,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-16__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter sp. 1,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C04-17__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter sp. 2,Carlino et al. 2024,MAG,NA,cured_meat_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2232_73323__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter sp. 3,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087094__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter sp. 4,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__DC18-02__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter sp002135205,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M7__bin.53,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Advenella,Advenella sp002810445,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M7__bin.19,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Advenella,Advenella sp003533245,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2232_73323__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Aerococcaceae,Aerococcus,Aerococcus urinaeequi,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920550__bin.1,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Nocardioidaceae,Aeromicrobium,Aeromicrobium camelliae,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-BD__bin.48,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Nocardioidaceae,Aeromicrobium,Aeromicrobium sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.22,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Nocardioidaceae,Aeromicrobium,Aeromicrobium sp. 2,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R01-19__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Aeromonadaceae,Aeromonas,Aeromonas bestiarum,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
Imad_S-7-b.bin.11,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Aeromonadaceae,Aeromonas,Aeromonas caviae,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-21__bin.24,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Aeromonadaceae,Aeromonas,Aeromonas rivipollensis,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436375.1_ASM143637v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Agrilactobacillus,Agrilactobacillus composti,NCBI,RefSeq,GCF_001436375.1,Composting material of distilled shochu residue,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946725.1_ASM394672v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Agrilactobacillus,Agrilactobacillus yilanensis,NCBI,RefSeq,GCF_003946725.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.41,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium cavarae,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-25.1__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium pusense,Carlino et al. 2024,MAG,NA,cheese_rind_1_t15,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068299__bin.21,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium rhizogenes_B,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-26.1__bin.11,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium sp005938205,Carlino et al. 2024,MAG,NA,cheese_rind_2_t15,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__G-18__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium tumefaciens_C subsp. 1,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__G-16__bin.4,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Agrobacterium,Agrobacterium tumefaciens_C subsp. 2,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-12D__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Agrococcus,Agrococcus casei,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q01-22__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Aidingimonas,Aidingimonas lacisalsi,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__671_Grayson__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Alcaligenes,Alcaligenes aquatilis,Carlino et al. 2024,MAG,NA,grayson,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920550__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Alcaligenes,Alcaligenes sp023425645,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2136_73322__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Alcanivoracaceae,Alcanivorax,Alcanivorax sp000155615,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0014-003_Alishewanella_jeotgali_KCTC_22429,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Alishewanella,Alishewanella jeotgali,Whon et al. 2021,draft,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-M12__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Alkalibacterium,Alkalibacterium gilvum,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-30__bin.25,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Alkalibacterium,Alkalibacterium putridalgicola,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_118__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Alkalibacterium,Alkalibacterium sp.,Carlino et al. 2024,MAG,NA,roquefort,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.26,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Alkanindiges,Alkanindiges sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF06__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Alloiococcus,Alloiococcus sp.,Carlino et al. 2024,MAG,NA,locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.16,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Bacteroidaceae,Alloprevotella,Alloprevotella sp004552155,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434555.1_ASM143455v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Amylolactobacillus,Amylolactobacillus amylophilus,NCBI,RefSeq,GCF_001434555.1,Swine waste-corn fermentation,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-30__bin.41,Bacteria,Bacillota_A,Clostridia,Tissierellales,SIT17,Anaeromonas,Anaeromonas sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_59__bin.12,Bacteria,Bacillota_A,Clostridia,Tissierellales,Peptoniphilaceae,Anaerosphaera,Anaerosphaera sp.,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.2,Bacteria,Bacillota_C,Negativicutes,Selenomonadales,Selenomonadaceae,Anaerovibrio,Anaerovibrio sp900548165,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-4D__bin.40,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,Ancrocorticia,Ancrocorticia populi,Carlino et al. 2024,MAG,NA,ripened_cheese_d3_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO011_71775__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,Ancrocorticia,Ancrocorticia sp.,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__R-32__bin.23,Bacteria,Bacillota,Bacilli,Bacillales,Anoxybacillaceae,Anoxybacillus,Anoxybacillus flavithermus_G,Carlino et al. 2024,MAG,NA,ice_cream_skim_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__P-22__bin.7,Bacteria,Bacillota,Bacilli,Bacillales,Anoxybacillaceae,Anoxybacillus,Anoxybacillus sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001281175.1_ASM128117v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus apinorum,NCBI,RefSeq,GCF_001281175.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001433825.1_ASM143382v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus kunkeei,NCBI,RefSeq,GCF_001433825.1,Commercial grape wine undergoing a sluggish/stuck alcoholic fermentation,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_006493595.1_ASM649359v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus micheneri,NCBI,RefSeq,GCF_006493595.1,Pollen provision,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435995.1_ASM143599v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus ozensis,NCBI,RefSeq,GCF_001435995.1,"Chrysanthemum, Oze National Park",vegetable,Japan,"Oze National Park, Japan",prokaryote,MiFoDB_gamma_v1_prok
GCF_002994005.1_ASM299400v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus quenuiae,NCBI,RefSeq,GCF_002994005.1,Wild bees and flowers,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
CrovadoreJ_2017__SRS1919172__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus sp.,Carlino et al. 2024,MAG,NA,royal_jelly,other,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002993965.1_ASM299396v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus timberlakei,NCBI,RefSeq,GCF_002993965.1,Wild bees and flowers,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.20,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Aquabacterium,Aquabacterium commune,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-30__bin.31,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Arachnia,Arachnia sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO007_71775__bin.38,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Arachnia,Arachnia sp. 2,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.22,Bacteria,Bacteroidota,Bacteroidia,Cytophagales,Spirosomaceae,Arcicella,Arcicella sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-16__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter,Arthrobacter oxydans,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-29__bin.29,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter,Arthrobacter sp.,Carlino et al. 2024,MAG,NA,cheese_rind_1_t30,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.30,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter,Arthrobacter ulcerisalmonis,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_4__bin.3,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter_H,Arthrobacter_H rhombi,Carlino et al. 2024,MAG,NA,pecorino_toscano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO102_71775__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter_H,Arthrobacter_H sp. 1,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2558__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter_H,Arthrobacter_H sp. 2,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Atlantibacter,Atlantibacter hermannii,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF57__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes pullistercoris,Carlino et al. 2024,MAG,NA,citrullus_vulgaris,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-M10__bin.23,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2558__bin.48,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 2,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2558__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 3,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF10__bin.16,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 4,Carlino et al. 2024,MAG,NA,locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2239_73323__bin.20,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 5,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2239_73323__bin.32,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Atopostipes,Atopostipes sp. 6,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.35,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Aureimonas_A,Aureimonas_A sp.,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_040.8,Bacteria,Proteobacteria,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Aureimonas_A,Aureimonas_A sp001425485,This paper,MAG,NA,Queens Water Kimchi,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-30__bin.31,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Avipropionibacterium,Avipropionibacterium sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M8__bin.3,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Avipropionibacterium,Avipropionibacterium sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653283__bin.1,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus altitudinis,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MS_bin.1,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus amyloliquefaciens,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
EBC_088.5,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus glycinifermentans,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF09__bin.10,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus licheniformis,Carlino et al. 2024,MAG,NA,melon_seeds,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_097.14,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus subtilis,This paper,MAG,NA,Cinsoy tamari mother,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus velezensis,Whon et al. 2021,complete,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
EBC_085.6,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae_G,Bacillus_A,Bacillus_A cereus,This paper,MAG,NA,Brioche miso,soy,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967741__bin.4,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae_G,Bacillus_A,Bacillus_A mycoides,Carlino et al. 2024,MAG,NA,water_kefir_coconut,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF15__bin.4,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae_G,Bacillus_A,Bacillus_A paranthracis,Carlino et al. 2024,MAG,NA,melon_seeds,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.9,Bacteria,Firmicutes,Bacilli,DSM-16016,Caldibacillaceae,Bacillus_J,Bacillus_J andreraoultii,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920550__bin.21,Bacteria,Bacillota,Bacilli,Bacillales,Caldibacillaceae,Bacillus_J,Bacillus_J sp.,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562500__bin.15,Bacteria,Bacillota,Bacilli,Bacillales,Caldibacillaceae,Bacillus_J,Bacillus_J thermoamylovorans,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_088.10,Bacteria,Firmicutes,Bacilli,Bacillales_B,Domibacillaceae,Bacillus_O,Bacillus_O smithii,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_gamma_v1_prok
C-R03.bin.7,Bacteria,Firmicutes,Bacilli,Lactobacillales,Aerococcaceae,Bavariicoccus,Bavariicoccus seileri,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
GCF_003030905.1_ASM303090v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium adolescentis,NCBI,RefSeq,GCF_003030905.1,Infant feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000224965.2_ASM22496v2_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium animalis,NCBI,RefSeq,GCF_000224965.2,N/A,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK010-2-L-48h-02A4_S64__bin.9,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium aquikefiri,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_030218415.1_ASM3021841v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium bifidum,NCBI,RefSeq,GCF_030218415.1,Human urine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001281425.1_ASM128142v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium breve,NCBI,RefSeq,GCF_001281425.1,Infant feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EscobarZepedaA_2016__SRS974112__bin.34,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium crudilactis,Carlino et al. 2024,MAG,NA,cotija,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000196555.1_ASM19655v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium longum,NCBI,RefSeq,GCF_000196555.1,Type material of Bifidobacterium longum subsp. longum,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2172_73322__bin.10,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium mongoliense,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK018-2-L-08h-02D8_S95__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium psychraerophilum,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK033-2-L-08h-03C2_S39__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium sp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.4,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK012-2-G-48h-01D6_S12__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium tibiigranuli,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967716__bin.4,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,BOG-930,BOG-930 sp.,Carlino et al. 2024,MAG,NA,water_kefir_ginger,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003522965.1_ASM352296v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus bombi,NCBI,RefSeq,GCF_003522965.1,Digestive tract of laboratory-reared bumblebee queens,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000970795.1_ASM97079v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus mellifer,NCBI,RefSeq,GCF_000970795.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000967245.1_ASM96724v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus mellis,NCBI,RefSeq,GCF_000967245.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R06.bin.12,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium alimentarium,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2588__bin.23,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium fresconis,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0208-003_Brachybacterium_kimchii_CBA3104,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium kimchii,Whon et al. 2021,complete,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium nesterenkovii,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-M10__bin.14,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB11-29__bin.23,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q03-30__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 3,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-22__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB06-30__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 5,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2570__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 6,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__N-20__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 7,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB15-29__bin.33,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 8,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-BD__bin.9,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 9,Carlino et al. 2024,MAG,NA,ripened_cheese_d3_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__MV011_71775__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 10,Carlino et al. 2024,MAG,NA,monte_veronese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-30__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 11,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_4__bin.22,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 12,Carlino et al. 2024,MAG,NA,pecorino_toscano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R44__bin.13,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 13,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__mgm4524498__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 14,Pasolli et al. 2020,MAG,NA,Natural pasteurized goat cheese,dairy,Spain,"Catalunya, Spain",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-29__bin.20,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp014400405,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-29__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp014897705,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0108-002_Brachybacterium_squillarum_M-6-3T,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium squillarum,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__771_Tarentaise__bin.3,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium tyrofermentans,Carlino et al. 2024,MAG,NA,tarentaise,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_088.16,Bacteria,Firmicutes,Bacilli,Brevibacillales,Brevibacillaceae,Brevibacillus,Brevibacillus borstelensis,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__E-22__bin.7,Bacteria,Bacillota,Bacilli,Brevibacillales,Brevibacillaceae,Brevibacillus,Brevibacillus thermoruber,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-22__bin.37,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium antiquum_A,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
BertuzziAS_2018__ERR2212293__bin.3,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium aurantiacum,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_gamma_v1_prok
BertuzziAS_2018__ERR2212303__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium casei,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_gamma_v1_prok
BertuzziAS_2018__ERR2212303__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium linens,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q03-30__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 1,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.17,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 2,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS07-25__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 3,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-08-BD__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_90__bin.4,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 5,Carlino et al. 2024,MAG,NA,soppressata_calabrese,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KastmanEK_2016__CSB694__bin.4,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 6,Carlino et al. 2024,MAG,NA,cheese_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FI109_71775__bin.14,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 7,Carlino et al. 2024,MAG,NA,finocchiona,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS12-29__bin.14,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 8,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__SP109_71775__bin.29,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 9,Carlino et al. 2024,MAG,NA,salame_piacentino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q01-29__bin.6,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 10,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-03-M5__bin.22,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 11,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2600__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 12,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R14.bin.10,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 13,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__mgm4524491__bin.8,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 14,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB10-30__bin.20,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp004745075,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466771__bin.3,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp004745485,Carlino et al. 2024,MAG,NA,tomme,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__mgm4524482__bin.2,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp900169365,Pasolli et al. 2020,MAG,NA,Natural raw cow cheese,dairy,United States of America,"Connecticut, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-AG__bin.19,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium yomogidense_A,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.24,Bacteria,Pseudomonadota,Alphaproteobacteria,Caulobacterales,Caulobacteraceae,Brevundimonas,Brevundimonas sp003938605,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R04-19__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Listeriaceae,Brochothrix,Brochothrix thermosphacta,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.12,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Brooklawnia,Brooklawnia sp.,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.45,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Crocinitomicaceae,Brumimicrobium,Brumimicrobium sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q02-27__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Buttiauxella,Buttiauxella agrestis,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q03-20__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Buttiauxella,Buttiauxella massiliensis,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SEM_47_S64.44,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Buttiauxella,Buttiauxella noackiae,This paper,MAG,NA,Viili 48h,dairy,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__O-25.1__bin.19,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Buttiauxella,Buttiauxella sp.,Carlino et al. 2024,MAG,NA,cheese_rind_1_t30,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.19,Bacteria,Bacillota_A,Clostridia,Oscillospirales,Butyricicoccaceae,Butyricicoccus_A,Butyricicoccus_A intestinisimiae,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803194__bin.35,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae_A,CABMKH01,CABMKH01 sp.,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.30,Bacteria,Bacillota_A,Clostridia,Lachnospirales,Lachnospiraceae,CAG-791,CAG-791 sp900101015,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-28__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Canibacter,Canibacter sp.,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.16,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Carideicomes,Carideicomes sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__SA009_71775__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium,Carnobacterium divergens,Carlino et al. 2024,MAG,NA,salsiccia_di_calabria,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO003_71775__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium,Carnobacterium divergens_A,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2142_73322__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium,Carnobacterium maltaromaticum,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050146__bin.11,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium_A,Carnobacterium_A inhibens,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__TA011_71775__bin.29,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium_A,Carnobacterium_A mobile,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_100__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium_A,Carnobacterium_A sp. 1,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__TA012_71775__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium_A,Carnobacterium_A sp. 2,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium_A,Carnobacterium_A sp. 3,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0043-002_Natronomonas_sp._CBA1134,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,CBA1134,CBA1134 sp001950595,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q08-22__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Celerinatantimonadaceae,Celerinatantimonas,Celerinatantimonas sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__U-22__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Celerinatantimonadaceae,Celerinatantimonas,Celerinatantimonas sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068300__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Cellulomonadaceae,Cellulosimicrobium,Cellulosimicrobium funkei,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967702__bin.2,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chishuiella,Chishuiella sp.,Carlino et al. 2024,MAG,NA,NA,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q05-22__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Chromohalobacter,Chromohalobacter beijerinckii subsp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__O-29__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Chromohalobacter,Chromohalobacter beijerinckii subsp. 2,Carlino et al. 2024,MAG,NA,cheese_rind_1_t60,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-22__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Chromohalobacter,Chromohalobacter canadensis,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_084.33,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Chromohalobacter,Chromohalobacter sp.,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.10,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium capnotolerans,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2242_73323__bin.17,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium carnipullorum,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115052__bin.1,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium gleum,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-22__bin.29,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium oncorhynchi,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-19__bin.17,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium scophthalmum,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.23,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium sp.,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO102_71775__bin.42,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Citricoccus,Citricoccus sp. 1,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Citricoccus,Citricoccus sp. 2,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2588__bin.45,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Citricoccus,Citricoccus sp. 3,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.31,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter braakii,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_9__bin.3,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter freundii,Pasolli et al. 2020,MAG,NA,"cheese, cheddar",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
EBC_031.14,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter_A,Citrobacter_A amalonaticus,This paper,MAG,NA,Alimentari Aurora red kraut brine,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
EBC_090.1,Archaea,Thermoproteota,Korarchaeia,class Korarchaeia,class Korarchaeia,class Korarchaeia,class Korarchaeia sp.,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM007_71775__bin.2,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Cloacibacterium,Cloacibacterium caeni_A,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF66__bin.10,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium beijerinckii subsp. 1,Carlino et al. 2024,MAG,NA,fermented_malted_millet_and_sorghum,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_134.5,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium beijerinckii subsp. 2,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF16__bin.7,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium saccharobutylicum,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK066-2-G-48h-05I1_S125__bin.1,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium saccharoperbutylacetonicum,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050146__bin.15,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium sp.,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.33,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium sp000435835,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_104__bin.11,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_B,Clostridium_B sp.,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_B,Clostridium_B tyrobutyricum,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF57__bin.1,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_F,Clostridium_F botulinum,Carlino et al. 2024,MAG,NA,citrullus_vulgaris,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.10,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_G,Clostridium_G cochlearium,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.3,Bacteria,Bacillota_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_I,Clostridium_I sp.,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_134.2,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_P,Clostridium_P perfringens,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466737__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Cobetia,Cobetia amphilecti,Carlino et al. 2024,MAG,NA,stretched-curd_cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_11__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Cobetia,Cobetia crustatorum,Carlino et al. 2024,MAG,NA,pecorino,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-03-M6__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Cobetia,Cobetia marina,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__E-22__bin.3,Bacteria,Bacillota,Bacilli,Paenibacillales,Paenibacillaceae,Cohnella,Cohnella laeviribosi,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO007_71775__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Colwellia,Colwellia sp.,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Comamonas,Comamonas sp.,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Comamonas,Comamonas terrae,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434745.1_ASM143474v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus alimentarius,NCBI,RefSeq,GCF_001434745.1,Marinated fish product,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001971585.1_ASM197158v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus allii,NCBI,RefSeq,GCF_001971585.1,Scallion kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946605.1_ASM394660v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus baiquanensis,NCBI,RefSeq,GCF_003946605.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653137__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus crustorum,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_098.21,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus farciminis,This paper,MAG,NA,Cinsoy S-21-V1,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_gamma_v1_prok
GCF_003573535.1_ASM357353v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus formosensis,NCBI,RefSeq,GCF_003573535.1,Fermented soybean meal,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946325.1_ASM394632v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus furfuricola,NCBI,RefSeq,GCF_003946325.1,Rice bran paste,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_006007945.1_ASM600794v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus futsaii,NCBI,RefSeq,GCF_006007945.1,"Fu-tsai, a traditional fermented mustard product",vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001050475.1_ASM105047v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus ginsenosidimutans,NCBI,RefSeq,GCF_001050475.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_1__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus halodurans,Carlino et al. 2024,MAG,NA,soppressata_dolce,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000831645.3_ASM83164v3_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus heilongjiangensis,NCBI,RefSeq,GCF_000831645.3,Chinese pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_005404815.1_ASM540481v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus huachuanensis,NCBI,RefSeq,GCF_005404815.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946555.1_ASM394655v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus hulinensis,NCBI,RefSeq,GCF_003946555.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946015.1_ASM394601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus insicii,NCBI,RefSeq,GCF_003946015.1,Pork salami,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946575.1_ASM394657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus jidongensis,NCBI,RefSeq,GCF_003946575.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946625.1_ASM394662v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kedongensis,NCBI,RefSeq,GCF_003946625.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946205.1_ASM394620v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus keshanensis,NCBI,RefSeq,GCF_003946205.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001438805.1_ASM143880v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kimchiensis,NCBI,RefSeq,GCF_001438805.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435445.1_ASM143544v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kimchii,NCBI,RefSeq,GCF_001435445.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002762335.1_ASM276233v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus metriopterae,NCBI,RefSeq,GCF_002762335.1,Type material of Lactobacillus terrae,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007992055.1_ASM799205v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus mindensis,NCBI,RefSeq,GCF_007992055.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946505.1_ASM394650v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus mishanensis,NCBI,RefSeq,GCF_003946505.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003967595.1_ASM396759v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus musae,NCBI,RefSeq,GCF_003967595.1,Banana fruits,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007991935.1_ASM799193v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nantensis,NCBI,RefSeq,GCF_007991935.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001592065.1_ASM159206v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nodensis,NCBI,RefSeq,GCF_001592065.1,Type material of Lactobacillus nodensis,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002872255.1_ASM287225v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nuruki,NCBI,RefSeq,GCF_002872255.1,nuruk,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434985.1_ASM143498v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus paralimentarius,NCBI,RefSeq,GCF_001434985.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002179915.1_ASM217991v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus paralimentarius_A,NCBI,RefSeq,GCF_002179915.1,grape variety Bobal,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967712__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp. 1,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967692__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp. 2,Carlino et al. 2024,MAG,NA,NA,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_68__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp. 3,Carlino et al. 2024,MAG,NA,finocchiona,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_69__bin.7,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp. 4,Carlino et al. 2024,MAG,NA,salame_napoli,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653374__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp. 5,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004745525.1_ASM474552v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus suantsaicola,NCBI,RefSeq,GCF_004745525.1,"suan tsai, fermented vegetables",vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434665.1_ASM143466v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus tucceti,NCBI,RefSeq,GCF_001434665.1,Sausage,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434295.1_ASM143429v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus versmoldensis,NCBI,RefSeq,GCF_001434295.1,Poultry salami,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003606365.2_ASM360636v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus zhachilii,NCBI,RefSeq,GCF_003606365.2,Type material of Lactobacillus zhachilii,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_5__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus zhongbaensis subsp. 1,Carlino et al. 2024,MAG,NA,castelmagno,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946515.1_ASM394651v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus zhongbaensis subsp. 2,NCBI,RefSeq,GCF_003946515.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003096575.1_ASM309657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Convivina,Convivina intestini,NCBI,RefSeq,GCF_003096575.1,Type material of Convivina intestini,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF45__bin.11,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium amycolatum_A,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2614__bin.9,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium casei,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-30__bin.1,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium faecigallinarum,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF06__bin.4,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium faecipullorum,Carlino et al. 2024,MAG,NA,locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium flavescens,Whon et al. 2021,draft,NA,cheese,dairy,Sweden,Sweden,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.26,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium gallinarum,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0110-001_Corynebacterium_nuruki_S6-4,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium nuruki,Whon et al. 2021,draft,NA,alcohol fermentation starter,grains,Unknown,Unknown,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.3,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium phoceense,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__C-20__bin.8,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium pollutisoli,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF11__bin.2,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium provencense,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2570__bin.32,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 1,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-30__bin.13,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 2,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF45__bin.5,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 3,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.11,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 4,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_2__bin.17,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 5,Carlino et al. 2024,MAG,NA,salame_avellino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.19,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 6,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.21,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 7,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__C-20__bin.3,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp012837295,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.16,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp012838985,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C07-19__bin.10,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium testudinoris,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-28__bin.27,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium variabile,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__E-20__bin.6,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium xerosis subsp. 1,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R03-19__bin.7,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium xerosis subsp. 2,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF76__bin.15,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter dublinensis,Carlino et al. 2024,MAG,NA,finger_millet_and_pearl_millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
P.1_bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter malonaticus,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
LeonardSR_2016__SRS1659779__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter turicensis,Carlino et al. 2024,MAG,NA,spinach_spiked_with_stec,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.12,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Cutibacterium,Cutibacterium acnes,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-01__bin.7,Bacteria,Deinococcota,Deinococci,Deinococcales,Deinococcaceae,Deinococcus,Deinococcus proteolyticus,Carlino et al. 2024,MAG,NA,milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__F01-19__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Dellaglioa,Dellaglioa algida,Carlino et al. 2024,MAG,NA,sausage_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__F02-18__bin.10,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Dellaglioa,Dellaglioa sp. 1,Carlino et al. 2024,MAG,NA,sausage_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C05-16__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Dellaglioa,Dellaglioa sp. 2,Carlino et al. 2024,MAG,NA,cured_meat_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-30__bin.12,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Demetria,Demetria sp.,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-29__bin.32,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermabacteraceae,Dermabacter,Dermabacter sp943913905,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C05-18__bin.6,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Dermacoccus,Dermacoccus nishinomiyaensis,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.25,Bacteria,Bacillota_C,Negativicutes,Veillonellales,Dialisteraceae,Dialister,Dialister sp000434475,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0107-002_Dietzia_alimentaria_72T,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Dietzia,Dietzia alimentaria,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS12-29__bin.35,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Dietzia,Dietzia sp. 1,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-30__bin.6,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Dietzia,Dietzia sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.15,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Duganella,Duganella sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM012_71775__bin.13,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Elizabethkingia,Elizabethkingia meningoseptica,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Enteractinococcus,Enteractinococcus sp.,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_091.9,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter asburiae_B,This paper,MAG,NA,Superior Qu,wheat,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
LeonardSR_2016__SRS1659769__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter bugandensis,Carlino et al. 2024,MAG,NA,spinach_spiked_with_stec,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967698__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter hormaechei_A,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_79__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter kobei,Carlino et al. 2024,MAG,NA,castelmagno,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2019__SRS3379157__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter mori,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter quasihormaechei,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF89__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter vonholyi,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF73__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter_D,Enterobacter_D kobei_A,Carlino et al. 2024,MAG,NA,finger_millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_144.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter_D,Enterobacter_D sp.,This paper,MAG,NA,Red Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2235_73323__bin.9,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus faecalis,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_A,Enterococcus_A gilvus,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_A,Enterococcus_A malodoratus,Whon et al. 2021,draft,NA,cheese,dairy,China,China,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050146__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_A,Enterococcus_A sp.,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__SR008_71775__bin.23,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_A,Enterococcus_A viikkiensis,Carlino et al. 2024,MAG,NA,soppressata_di_ricigliano,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0155-001_Enterococcus_durans_IQ23,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_B,Enterococcus_B durans,Whon et al. 2021,draft,NA,cheese,dairy,Argentina,Argentina,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0168-001_Enterococcus_faecium_IQ110,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_B,Enterococcus_B faecium,Whon et al. 2021,draft,NA,cheese,dairy,Argentina,Argentina,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_B,Enterococcus_B lactis,Whon et al. 2021,draft,NA,cheese,dairy,France,France,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C07-19__bin.9,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_D,Enterococcus_D casseliflavus,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.10,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_D,Enterococcus_D gallinarum,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115052__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_E,Enterococcus_E cecorum,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2618__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_G,Enterococcus_G italicus,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.11,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Epilithonimonas,Epilithonimonas bovis,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-21__bin.37,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Epilithonimonas,Epilithonimonas ginsengisoli,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050146__bin.19,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia billingiae,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_080.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia persicina,This paper,MAG,NA,Dofu mold,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__932_Robiola_due_Latte__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia sp.,Carlino et al. 2024,MAG,NA,robiola_due_latti,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_140.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia sp000599885,This paper,MAG,NA,Wild Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
EBC_095.37,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia sp003937915,This paper,MAG,NA,Daikon Kasuzuke,vegetable,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050146__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia_B,Erwinia_B gerundensis,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803193__bin.14,Bacteria,Bacillota,Bacilli,Erysipelotrichales,Erysipelotrichaceae,Erysipelothrix,Erysipelothrix sp. 1,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803194__bin.17,Bacteria,Bacillota,Bacilli,Erysipelotrichales,Erysipelotrichaceae,Erysipelothrix,Erysipelothrix sp. 2,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.12,Bacteria,Bacillota,Bacilli,Erysipelotrichales,Erysipelotrichaceae,Erysipelothrix,Erysipelothrix sp. 3,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967688__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Escherichia,Escherichia coli,Carlino et al. 2024,MAG,NA,wagashi,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK020-1-L-08h-02E5_S101__bin.6,Bacteria,Bacillota_A,Clostridia,Oscillospirales,Ethanoligenenaceae,Ethanoligenens,Ethanoligenens sp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK034-1-L-08h-03C4_S41__bin.7,Bacteria,Bacillota_A,Clostridia,Oscillospirales,Ethanoligenenaceae,Ethanoligenens,Ethanoligenens sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967715__bin.12,Bacteria,Bacillota_A,Clostridia,Oscillospirales,Ethanoligenenaceae,Ethanoligenens,Ethanoligenens sp. 3,Carlino et al. 2024,MAG,NA,water_kefir_lemon,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C02-19__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Ewingella,Ewingella americana,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-17__bin.6,Bacteria,Bacillota,Bacilli,Exiguobacterales,Exiguobacteraceae,Exiguobacterium,Exiguobacterium chiriqhucha,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
Nixt_bin.2,Bacteria,Firmicutes,Bacilli,Exiguobacterales,Exiguobacteraceae,Exiguobacterium,Exiguobacterium sp902362975,Kothe et al. 2023a,MAG,NA,nixtamalized yellow pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-16__bin.9,Bacteria,Bacillota,Bacilli,Exiguobacterales,Exiguobacteraceae,Exiguobacterium_A,Exiguobacterium_A indicum,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Falsochrobactrum,Falsochrobactrum shanghaiense,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-BD__bin.19,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,family Actinomycetaceae,family Actinomycetaceae sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803192__bin.31,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,family Amphibacillaceae,family Amphibacillaceae sp. 1,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803191__bin.31,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,family Amphibacillaceae,family Amphibacillaceae sp. 2,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB14-F-BR__bin.39,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Beutenbergiaceae,family Beutenbergiaceae,family Amphibacillaceae sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB01-30__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Beutenbergiaceae,family Beutenbergiaceae,family Amphibacillaceae sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,family Burkholderiaceae_B,family Burkholderiaceae_B sp.,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-06-AD__bin.9,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,family Carnobacteriaceae,family Carnobacteriaceae sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803193__bin.7,Bacteria,Bacillota_A,Clostridia,Lachnospirales,Cellulosilyticaceae,family Cellulosilyticaceae,family Cellulosilyticaceae sp. 1,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803194__bin.11,Bacteria,Bacillota_A,Clostridia,Lachnospirales,Cellulosilyticaceae,family Cellulosilyticaceae,family Cellulosilyticaceae sp. 2,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF68__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,family Lactobacillaceae,family Lactobacillaceae sp.,Carlino et al. 2024,MAG,NA,malted_maize_zea_mays,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.25,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,family Microbacteriaceae,family Microbacteriaceae sp. 1,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.17,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,family Microbacteriaceae,family Microbacteriaceae sp. 2,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,family Microbacteriaceae,family Microbacteriaceae sp. 3,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-08-AG__bin.20,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,family Micrococcaceae,family Micrococcaceae sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO007_71775__bin.37,Bacteria,Bacillota_A,Clostridia,Tissierellales,Peptoniphilaceae,family Peptoniphilaceae,family Peptoniphilaceae sp. 1,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF15__bin.7,Bacteria,Bacillota_A,Clostridia,Tissierellales,Peptoniphilaceae,family Peptoniphilaceae,family Peptoniphilaceae sp. 2,Carlino et al. 2024,MAG,NA,melon_seeds,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-30__bin.16,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,family Propionibacteriaceae,family Propionibacteriaceae sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.24,Bacteria,Bacillota,Bacilli,Bacillales_K,Sporolactobacillaceae,family Sporolactobacillaceae,family Sporolactobacillaceae sp.,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803192__bin.11,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 1,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803193__bin.13,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 2,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803195__bin.23,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 3,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.2,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 4,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803192__bin.16,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 5,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803193__bin.3,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 6,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803194__bin.24,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae,family Tissierellaceae,family Tissierellaceae sp. 7,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.21,Bacteria,Patescibacteria,Saccharimonadia,Saccharimonadales,UBA1547,family UBA1547,family UBA1547 sp.,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_59__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,family Vagococcaceae,family Vagococcaceae sp.,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB15-29__bin.12,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,Flaviflexus,Flaviflexus ciconiae,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-14D__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,Flaviflexus,Flaviflexus sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-032__bin.10,Bacteria,Bacteroidota,Rhodothermia,Balneolales,Balneolaceae,Fodinibius,Fodinibius sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2136_73322__bin.21,Bacteria,Pseudomonadota,Alphaproteobacteria,Kiloniellales,DSM-21159,Fodinicurvata,Fodinicurvata sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.46,Bacteria,Pseudomonadota,Alphaproteobacteria,Kiloniellales,DSM-21159,Fodinicurvata,Fodinicurvata sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068301__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Rhodanobacteraceae,Frateuria,Frateuria sp.,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-18__bin.16,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Frigoribacterium,Frigoribacterium sp014842255,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436645.1_ASM143664v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus florum,NCBI,RefSeq,GCF_001436645.1,Peony (Paeonia suffruticosa),NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0177-001_Lactobacillus_homohiochii_DSM_20571,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus fructivorans,Whon et al. 2021,draft,NA,sake,grains,Japan,Japan,prokaryote,MiFoDB_gamma_v1_prok
GCF_024029915.1_ASM2402991v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus ixorae,NCBI,RefSeq,GCF_024029915.1,Flower (West-Indian jasmine),NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001702115.1_ASM170211v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus lindneri,NCBI,RefSeq,GCF_001702115.1,Beer,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653399__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus sanfranciscensis,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087090__bin.7,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus sp.,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_900112405.1_IMG-taxon_2603880187_annotated_assembly_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus durionis,NCBI,RefSeq,GCF_900112405.1,Type material of Fructobacillus durionis,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001047075.2_ASM104707v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus ficulneus,NCBI,RefSeq,GCF_001047075.2,Fig,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_014489725.1_ASM1448972v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus fructosus,NCBI,RefSeq,GCF_014489725.1,Plant,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001047115.2_ASM104711v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus pseudoficulneus,NCBI,RefSeq,GCF_001047115.2,Fig,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF72__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus sp. 1,Carlino et al. 2024,MAG,NA,ripe_plantain,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF21__bin.7,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus sp. 2,Carlino et al. 2024,MAG,NA,palm_tree,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF55__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus sp. 3,Carlino et al. 2024,MAG,NA,palm_sap,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_016860625.1_ASM1686062v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus tropaeoli,NCBI,RefSeq,GCF_016860625.1,Flower,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653152__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus milii,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_013394005.1_ASM1339400v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus rossiae,NCBI,RefSeq,GCF_013394005.1,Swine gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007989765.1_ASM798976v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus siliginis,NCBI,RefSeq,GCF_007989765.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.20,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO007_71775__bin.32,Bacteria,Fusobacteriota,Fusobacteriia,Fusobacteriales,Fusobacteriaceae,Fusobacterium_B,Fusobacterium_B sp.,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R02.bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Galactobacter,Galactobacter sp. 1,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Galactobacter,Galactobacter sp. 2,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.12,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Galactobacter,Galactobacter valiniphilus,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__C-22__bin.5,Bacteria,Bacillota,Bacilli,Bacillales,Anoxybacillaceae,Geobacillus,Geobacillus stearothermophilus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050145__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Glaciihabitans,Glaciihabitans sp.,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.14,Bacteria,Firmicutes,Bacilli,Lactobacillales,Aerococcaceae,Globicatella,Globicatella sulfidifaciens,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK045-2-L-48h-03H6_S88__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter dulcium,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK037-1-L-48h-03D8_S54__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter liquefaciens,Carlino et al. 2024,MAG,NA,water_kefir_figs_semi-dry_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK029-1-L-48h-03A3_S22__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter albidus,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK006-1-L-48h-01H4_S46__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter cadivus,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967701__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter oxydans subsp. 1,Carlino et al. 2024,MAG,NA,water_kefir,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK014-2-L-48h-02C2_S80__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter oxydans subsp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967724__bin.7,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter potus,Carlino et al. 2024,MAG,NA,NA,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK038-1-L-48h-03E3_S58__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter sp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967728__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_pear_ginger_and_sugar,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967697__bin.7,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter sp018811945,Carlino et al. 2024,MAG,NA,ginger,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK038-2-L-48h-03E5_S60__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter_A,Gluconobacter_A cerinus subsp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK059-2-L-48h-04H3_S37__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter_A,Gluconobacter_A cerinus subsp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK007-2-L-48h-01I1_S52__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter_A,Gluconobacter_A japonicus,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967690__bin.4,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter_A,Gluconobacter_A sp014132155,Carlino et al. 2024,MAG,NA,rye_bread_and_sugar_kvass,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2149_73322__bin.12,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter ardleyensis subsp. 1,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_114__bin.22,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter ardleyensis subsp. 2,Carlino et al. 2024,MAG,NA,brie,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-29__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter arilaitensis,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.16,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter creatinolyticus,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-29__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter sp004320535,Carlino et al. 2024,MAG,NA,cheese_rind_1_t30,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-08-AG__bin.53,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Gordonia,Gordonia sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803195__bin.39,Bacteria,Bacillota_A,Clostridia,Tissierellales,Gottschalkiaceae,Gottschalkia,Gottschalkia sp.,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM007_71775__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Chromobacteriaceae,Gulbenkiania,Gulbenkiania mobilis,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Gulosibacter,Gulosibacter sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-M15__bin.31,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Gulosibacter,Gulosibacter sp900163695,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_011617105.1_ASM1161710v1_genomic,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia alvei,NCBI,RefSeq,GCF_011617105.1,Plant rhizosphere,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0138-001_Hafnia_alvei_B16-3,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia alvei_B,Whon et al. 2021,draft,NA,cheese,dairy,France,France,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_115__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia paralvei,Carlino et al. 2024,MAG,NA,provola_affumicata,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2587__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia protea,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0033-002_Haladaptatus_cibarius_D43,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haladaptataceae,Haladaptatus,Haladaptatus cibarius,Whon et al. 2021,NA,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.6,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halalkalicoccaceae,Halalkalicoccus,Halalkalicoccus sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q08-22__bin.23,Bacteria,Bacillota_F,Halanaerobiia,Halanaerobiales,Halanaerobiaceae,Halanaerobium,Halanaerobium sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.2,Bacteria,Bacillota_F,Halanaerobiia,Halanaerobiales,Halanaerobiaceae,Halanaerobium,Halanaerobium sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.17,Bacteria,Bacillota_F,Halanaerobiia,Halanaerobiales,Halanaerobiaceae,Halanaerobium,Halanaerobium sp. 3,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0038-005_Halapricum_salinum_CBA1105,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Halapricum,Halapricum salinum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0097-004_Halapricum_sp._CBA1109,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Halapricum,Halapricum sp009741825,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0044-002_Halarchaeum_sp._CBA1220,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halarchaeum,Halarchaeum grantii,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__N-22__bin.10,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halarchaeum,Halarchaeum sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.4,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halarchaeum,Halarchaeum sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0041-005_Haloarcula_hispanica_CBA1128,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula hispanica,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.30,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0039-005_Haloarcula_marismortui_CBA1127,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula sp001485575,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0055-001_Haloarcula_sp._CBA1129,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula sp008729015,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__N-22__bin.3,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halobacterium,Halobacterium salinarum,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0105-003_Halobacterium_sp._CBA1126,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halobacterium,Halobacterium sp009741975,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0035-005_Halobellus_rufus_CBA1103,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halobellus,Halobellus rufus,Whon et al. 2021,NA,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.17,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halocalculus,Halocalculus aciditolerans,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.7,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halococcaceae,Halococcus,Halococcus morrhuae,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.14,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halococcaceae,Halococcus,Halococcus salifodinae,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0111-001_Halococcus_sediminicola_CBA1101,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halococcaceae,Halococcus,Halococcus sediminicola,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.12,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halococcaceae,Halococcus,Halococcus sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0083-001_Haloferax_sp._CBA1149,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674585,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0082-001_Haloferax_sp._CBA1148,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674605,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0084-004_Haloferax_sp._CBA1150,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674625,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0103-004_Halogeometricum_sp._CBA1124,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halogeometricum,Halogeometricum rufum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0036-005_Halolamina_rubra_CBA1107,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halolamina,Halolamina rubra,Whon et al. 2021,NA,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.13,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halolamina,Halolamina sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0046-001_Halolamina_salina_CBA1230,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halolamina,Halolamina sp002025255,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-29__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas alkaliphila,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-30__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas cupida,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.24,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas jeotgali,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0142-001_Halomonas_nigrificans_MBT_G8648,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas nigrificans,Whon et al. 2021,draft,NA,cheese,dairy,Germany,Germany,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q08-22__bin.21,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas salicampi,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB11-30__bin.19,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2591__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 3,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-22__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.47,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 5,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-BD__bin.61,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 6,Carlino et al. 2024,MAG,NA,ripened_cheese_d3_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-22__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 7,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-14D__bin.48,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 8,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__DC18-032__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 9,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 10,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-BD__bin.29,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 11,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 12,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 13,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 14,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-22__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 15,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-22__bin.14,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 16,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q05-22__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 17,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-30__bin.45,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 18,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R7__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp002332255,Pasolli et al. 2020,MAG,NA,"cheese, cheddar",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2147_73322__bin.24,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp014897985,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466789__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp900163645,Carlino et al. 2024,MAG,NA,brie,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.20,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas titanicae,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.18,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas_E,Halomonas_E taeanensis_A,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__T-22__bin.25,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halopelagius,Halopelagius inordinatus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0098-002_Haloplanus_sp._CBA1112,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloplanus,Haloplanus rubicundus,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0037-006_Halorubrum_halophilum_B8,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum halophilum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0045-003_Halorubrum_sp._CBA1229,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp003721435,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0081-002_Halorubrum_halophilum_CBA1147,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp003990725,Whon et al. 2021,draft,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0104-003_Halorubrum_sp._CBA1125,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp009742825,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0048-002_Halorubrum_sp._CBA1232,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum trapanicum_A,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-032__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Halospina,Halospina sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.15,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Halospina,Halospina utahensis_B,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.9,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Natrialbaceae,Halostagnicola,Halostagnicola sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0100-002_Halostella_salina_CBA1114,Archaea,Halobacteriota,Halobacteria,Halobacteriales,QS-9-68-17,Halostella,Halostella salina,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967715__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Herminiimonas,Herminiimonas sp.,Carlino et al. 2024,MAG,NA,water_kefir_lemon,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436605.1_ASM143660v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Holzapfelia,Holzapfelia floricola,NCBI,RefSeq,GCF_001436605.1,Flower of Caltha palustris,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PA207_73417__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Hylemonella,Hylemonella delicata,Carlino et al. 2024,MAG,NA,parmigiano_reggiano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.9,Bacteria,Bacteroidota,Bacteroidia,Cytophagales,Hymenobacteraceae,Hymenobacter,Hymenobacter sp. 1,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.35,Bacteria,Bacteroidota,Bacteroidia,Cytophagales,Hymenobacteraceae,Hymenobacter,Hymenobacter sp. 2,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.11,Bacteria,Bacteroidota,Bacteroidia,Cytophagales,Hymenobacteraceae,Hymenobacter,Hymenobacter sp. 3,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q05-22__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Idiomarina,Idiomarina loihiensis,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_40__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Idiomarina,Idiomarina sp. 1,Pasolli et al. 2020,MAG,NA,"cheese, stretched-curd cheese",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2237_73323__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Idiomarina,Idiomarina sp. 2,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.37,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Idiomarina,Idiomarina sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-22__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Idiomarina,Idiomarina sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB14-F-AR__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Idiomarina,Idiomarina sp. 5,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.11,Bacteria,Proteobacteria,Gammaproteobacteria,Cardiobacteriales,Wohlfahrtiimonadaceae,Ignatzschineria,Ignatzschineria cameli,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803195__bin.4,Bacteria,Bacillota,Bacilli,Erysipelotrichales,Erysipelotrichaceae,JAAZDN01,JAAZDN01 sp.,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-BD__bin.46,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,JAJYRX01,JAJYRX01 sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.21,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,JAJYSO01,JAJYSO01 sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967734__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,JAKVJE01,JAKVJE01 sp. 1,Carlino et al. 2024,MAG,NA,ginger_sliced_in_2percent_brine,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK041-2-G-48h-04B8_S117__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,JAKVJE01,JAKVJE01 sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-30__bin.33,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Janibacter,JAKVJE01 sp. 3,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-M10__bin.12,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Janibacter,JAKVJE01 sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-29__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Janibacter,JAKVJE01 sp. 5,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-21__bin.42,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Janthinobacterium,Janthinobacterium sp.,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.10,Bacteria,Acidobacteriota,Terriglobia,Bryobacterales,Bryobacteraceae,JANWVO01,JANWVO01 sp.,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-2D__bin.24,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,JB111,JB111 sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-AD__bin.33,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,JB111,JB111 sp900163555,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920555__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Jejubacter,Jejubacter sp.,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803194__bin.38,Bacteria,Bacillota,Bacilli,Lactobacillales,Aerococcaceae,Jeotgalibaca,Jeotgalibaca dankookensis,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.16,Bacteria,Bacillota,Bacilli,Lactobacillales,Aerococcaceae,Jeotgalibaca,Jeotgalibaca sp.,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562503__bin.9,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus nanhaiensis,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.43,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus psychrophilus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2247_73323__bin.3,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus sp. 1,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO013_71775__bin.11,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus sp. 2,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KastmanEK_2016__CSB694__bin.6,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus sp. 3,Carlino et al. 2024,MAG,NA,cheese_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.20,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Jeotgalicoccus,Jeotgalicoccus sp003513765,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM013_71775__bin.4,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Weeksellaceae,Kaistella,Kaistella haifensis,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PfeferT_xxxx__SRS2870597__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella grimontii,Carlino et al. 2024,MAG,NA,cheddar_cheese_spiked_with_ecoli,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_134.6,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella michiganensis,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q02-30__bin.22,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella ornithinolytica,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2017__ERR1981169__bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella pneumoniae,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2017__ERS1739839__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella quasipneumoniae,Carlino et al. 2024,MAG,NA,NA,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2587__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella terrigena,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_134.7,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella variicola,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967701__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kluyvera,Kluyvera cryocrescens,Carlino et al. 2024,MAG,NA,water_kefir,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2596__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kluyvera,Kluyvera intermedia,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.4,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria carniphila,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-17__bin.39,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria palustris,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-02__bin.9,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria rhizophila,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-22__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria salsicia,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-22__bin.11,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.28,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria sp. 2,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB10-22__bin.20,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria sp025149945,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__O-30__bin.2,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Kocuria,Kocuria varians,Carlino et al. 2024,MAG,NA,cheese_rind_2_t60,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003311635.1_ASM331163v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter cocois,NCBI,RefSeq,GCF_003311635.1,Coconut milk,fruit,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_006538185.1_ASM653818v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter diospyri,NCBI,RefSeq,GCF_006538185.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_gamma_v1_prok
GCF_002173515.1_ASM217351v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter europaeus,NCBI,RefSeq,GCF_002173515.1,NA,NA,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_014843995.1_ASM1484399v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter hansenii,NCBI,RefSeq,GCF_014843995.1,Tibicos,sugar,Russia,Russia,prokaryote,MiFoDB_gamma_v1_prok
GCF_000817255.2_ASM81725v2_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter intermedius,NCBI,RefSeq,GCF_000817255.2,Kombucha,sugar,Brazil,Brazil,prokaryote,MiFoDB_gamma_v1_prok
GCF_000182745.2_ASM18274v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter medellinensis,NCBI,RefSeq,GCF_000182745.2,Type strain of Komagataeibacter medellinensis,NA,Japan,Japan,prokaryote,MiFoDB_gamma_v1_prok
GCF_002009295.1_ASM200929v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter nataicola,NCBI,RefSeq,GCF_002009295.1,NA,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter rhaeticus,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK004-2-L-48h-01G7_S40__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter saccharivorans,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003207895.1_ASM320789v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter swingsii,NCBI,RefSeq,GCF_003207895.1,organic apple juice,fruit,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
GCF_004006375.1_ASM400637v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter xylinus,NCBI,RefSeq,GCF_004006375.1,NA,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939580__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter xylinus_C,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_082.15,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kosakonia,Kosakonia cowanii,This paper,MAG,NA,Furu #2,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF74__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kosakonia,Kosakonia sp.,Carlino et al. 2024,MAG,NA,sorghum_and_pearl_millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001458555.1_JGI_assembly_genomic,Bacteria,Bacteroidota,Kryptonia,Kryptoniales,Kryptoniaceae,Kryptonium,Kryptonium tengchongense,NCBI,RefSeq,GCF_001458555.1,Hot springs,NA,China,China,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-26__bin.3,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Kurthia,Kurthia gibsonii subsp. 1,Carlino et al. 2024,MAG,NA,fresh_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967702__bin.3,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Kurthia,Kurthia gibsonii subsp. 2,Carlino et al. 2024,MAG,NA,NA,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-22__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Kushneria,Kushneria sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-22__bin.17,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Kushneria,Kushneria sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.3,Bacteria,Bacillota_A,Clostridia,Lachnospirales,Lachnospiraceae,Lacrimispora,Lacrimispora sp.,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF63__bin.4,Bacteria,Bacillota_A,Clostridia,Lachnospirales,Lachnospiraceae,Lacrimispora,Lacrimispora xylanolytica_C,Carlino et al. 2024,MAG,NA,sphenostylis_stenocarpa,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946165.1_ASM394616v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus baoqingensis,NCBI,RefSeq,GCF_003946165.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436115.1_ASM143611v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus brantae,NCBI,RefSeq,GCF_001436115.1,Faeces of Canada goose,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436615.1_ASM143661v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus camelliae,NCBI,RefSeq,GCF_001436615.1,Fermented tea leaves (miang),vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000829055.1_ASM82905v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus casei,NCBI,RefSeq,GCF_000829055.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_018363075.1_ASM1836307v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus chiayiensis,NCBI,RefSeq,GCF_018363075.1,Raw milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946115.1_ASM394611v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus daqingensis,NCBI,RefSeq,GCF_003946115.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946465.1_ASM394646v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus hegangensis,NCBI,RefSeq,GCF_003946465.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004010095.1_ASM401009v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus hulanensis,NCBI,RefSeq,GCF_004010095.1,pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946485.1_ASM394648v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus jixianensis,NCBI,RefSeq,GCF_003946485.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_009184845.1_ASM918484v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus manihotivorans,NCBI,RefSeq,GCF_009184845.1,Cassava sour starch fermentation,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434705.1_ASM143470v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus nasuensis,NCBI,RefSeq,GCF_001434705.1,Sudan grass Sorghum sudanense (piper) silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001591865.1_ASM159186v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus pantheris,NCBI,RefSeq,GCF_001591865.1,Jaguar faeces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000155515.2_ASM15551v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus paracasei,NCBI,RefSeq,GCF_000155515.2,Pasteurized milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946305.1_ASM394630v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus porcinae,NCBI,RefSeq,GCF_003946305.1,Traditional Vietnamese nem chua,meat,Vietnam,Vietnam,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0135-001_Lactobacillus_rhamnosus_DPC_7102,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus rhamnosus,Whon et al. 2021,draft,NA,cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437465.1_ASM143746v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus saniviri,NCBI,RefSeq,GCF_001437465.1,Type material of Lactobacillus saniviri,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436225.1_ASM143622v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus sharpeae,NCBI,RefSeq,GCF_001436225.1,Municipal sewage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946025.1_ASM394602v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus songhuajiangensis,NCBI,RefSeq,GCF_003946025.1,Chinese traditional pickle and sourdough,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068302__bin.28,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus sp.,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946175.1_ASM394617v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus suibinensis,NCBI,RefSeq,GCF_003946175.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436135.1_ASM143613v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus thailandensis,NCBI,RefSeq,GCF_001436135.1,Fermented tea leaves (miang),vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946405.1_ASM394640v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus yichunensis,NCBI,RefSeq,GCF_003946405.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_900492555.1_CECT9104_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus zeae,NCBI,RefSeq,GCF_900492555.1,Corn steep liquor,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405005.1_ASM540500v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus daoliensis,NCBI,RefSeq,GCF_005405005.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405085.1_ASM540508v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus daowaiensis,NCBI,RefSeq,GCF_005405085.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405105.1_ASM540510v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus dongliensis,NCBI,RefSeq,GCF_005405105.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000498955.2_NMG01_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus fabifermentans,NCBI,RefSeq,GCF_000498955.2,Cocoa bean heap fermentation,seed,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
GCF_001039045.1_ASM103904v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus herbarum,NCBI,RefSeq,GCF_001039045.1,Fermented radish,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405425.1_ASM540542v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus modestisalitolerans,NCBI,RefSeq,GCF_005405425.1,Fermented fish,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405385.1_ASM540538v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus mudanjiangensis,NCBI,RefSeq,GCF_005405385.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405065.1_ASM540506v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus nangangensis,NCBI,RefSeq,GCF_005405065.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_029025825.1_ASM2902582v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus paraplantarum,NCBI,RefSeq,GCF_029025825.1,Fermented pepper,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003641185.1_ASM364118v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus pentosus,NCBI,RefSeq,GCF_003641185.1,Type material of Lactobacillus pentosus,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005404945.1_ASM540494v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus pingfangensis,NCBI,RefSeq,GCF_005404945.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405405.1_ASM540540v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus plajomi,NCBI,RefSeq,GCF_005405405.1,Fermented fish,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
NP3.2_bin.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus plantarum,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
GCF_005405125.1_ASM540512v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus songbeiensis,NCBI,RefSeq,GCF_005405125.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967722__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus sp. 1,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__ST007_71775__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus sp. 2,Carlino et al. 2024,MAG,NA,salame_tipico,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
FS03_2016_noduplicates_bin.6,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus sp. 3,Leech et al. 2020,MAG,NA,boza,grains,United Kingdom,United Kingdom,prokaryote,MiFoDB_gamma_v1_prok
GCF_001438845.1_ASM143884v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus xiangfangensis,NCBI,RefSeq,GCF_001438845.1,Chinese pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436775.1_ASM143677v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus acetotolerans,NCBI,RefSeq,GCF_001436775.1,Fermented Vinegar Broth,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000389675.2_ASM38967v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus acidophilus,NCBI,RefSeq,GCF_000389675.2,Human,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF41__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus amylolyticus,Carlino et al. 2024,MAG,NA,millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000194115.1_ASM19411v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus amylovorus,NCBI,RefSeq,GCF_000194115.1,Pig intestine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002837055.1_ASM283705v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus apis,NCBI,RefSeq,GCF_002837055.1,Stomach of honeybees,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002916915.1_ASM291691v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus bombicola,NCBI,RefSeq,GCF_002916915.1,Bumblebee gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_017874575.1_ASM1787457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus colini,NCBI,RefSeq,GCF_017874575.1,Type material of Lactobacillus colini,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009769205.1_ASM976920v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus crispatus,NCBI,RefSeq,GCF_009769205.1,Red junglefowl,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_006740305.1_ASM674030v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus delbrueckii,NCBI,RefSeq,GCF_006740305.1,Sour grain mash,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434815.1_ASM143481v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus equicursoris,NCBI,RefSeq,GCF_001434815.1,Healthy thoroughbred racehorse,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002160635.1_ASM216063v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gallinarum,NCBI,RefSeq,GCF_002160635.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_008868535.1_ASM886853v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gasseri,NCBI,RefSeq,GCF_008868535.1,Human,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436575.1_ASM143657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gigeriorum,NCBI,RefSeq,GCF_001436575.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434515.1_ASM143451v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus hamsteri,NCBI,RefSeq,GCF_001434515.1,Faeces of hamster,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003173695.1_ASM317369v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus helsingborgensis,NCBI,RefSeq,GCF_003173695.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0154-001_Lactobacillus_helveticus_NWC_2_4,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus helveticus,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436125.1_ASM143612v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus hominis,NCBI,RefSeq,GCF_001436125.1,Human intestine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009556455.1_ASM955645v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus iners,NCBI,RefSeq,GCF_009556455.1,Human urine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_024397795.1_ASM2439779v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus intestinalis,NCBI,RefSeq,GCF_024397795.1,Intestine of rat,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001936235.1_ASM193623v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus jensenii,NCBI,RefSeq,GCF_001936235.1,Human vaginal discharge,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001433975.1_ASM143397v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus johnsonii,NCBI,RefSeq,GCF_001433975.1,Human blood,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434335.1_ASM143433v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kalixensis,NCBI,RefSeq,GCF_001434335.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MAG_S8,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kefiranofaciens,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_gamma_v1_prok
GCF_000970755.1_ASM97075v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kimbladii_A,NCBI,RefSeq,GCF_000970755.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434435.1_ASM143443v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kitasatonis,NCBI,RefSeq,GCF_001434435.1,Chicken intestine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003151025.1_ASM315102v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kullabergensis,NCBI,RefSeq,GCF_003151025.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000970775.1_ASM97077v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus melliventris,NCBI,RefSeq,GCF_000970775.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007095465.1_ASM709546v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus mulieris,NCBI,RefSeq,GCF_007095465.1,human urine,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002916935.1_ASM291693v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus panisapium,NCBI,RefSeq,GCF_002916935.1,"Bee bread of Apis cerana collected from a hive in Kunming, Chi",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005886075.1_ASM588607v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus paragasseri,NCBI,RefSeq,GCF_005886075.1,Human,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001433915.1_ASM143391v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus pasteurii,NCBI,RefSeq,GCF_001433915.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009695985.1_ASM969598v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus porci,NCBI,RefSeq,GCF_009695985.1,Swine feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000425905.1_ASM42590v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus psittaci,NCBI,RefSeq,GCF_000425905.1,Lung of parrott,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_024622425.1_ASM2462242v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus rodentium,NCBI,RefSeq,GCF_024622425.1,Wild mouse gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF55__bin.16,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus sp. 1,Carlino et al. 2024,MAG,NA,palm_sap,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF23__bin.9,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus sp. 2,Carlino et al. 2024,MAG,NA,palm_tree,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF82__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus sp. 3,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2630__bin.28,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus sp. 4,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087090__bin.22,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus sp002418055,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436695.1_ASM143669v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus taiwanensis,NCBI,RefSeq,GCF_001436695.1,Silage cattle feed,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_016647595.1_ASM1664759v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus ultunensis,NCBI,RefSeq,GCF_016647595.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004009905.1_ASM400990v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus xujianguonis,NCBI,RefSeq,GCF_004009905.1,Himalayan marmot,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus cremoris,Whon et al. 2021,draft,NA,cheese,dairy,Netherlands,Netherlands,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_106__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus formosensis,Carlino et al. 2024,MAG,NA,salame_al_cinghiale,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.21,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus garvieae,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF68__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus hircilactis,Carlino et al. 2024,MAG,NA,malted_maize_zea_mays,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__P1__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus lactis subsp. 1,Carlino et al. 2024,MAG,NA,milk_kefir,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_144.27,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus lactis subsp. 2,This paper,MAG,NA,Red Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_79__bin.23,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus petauri,Carlino et al. 2024,MAG,NA,castelmagno,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2212_73323__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus sp.,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF66__bin.13,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus taiwanensis,Carlino et al. 2024,MAG,NA,fermented_malted_millet_and_sorghum,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2201_73323__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A carnosus,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__V9__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A laudensis,Carlino et al. 2024,MAG,NA,milk_kefir,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-28__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A paracarnosus,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-20__bin.14,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A raffinolactis,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087094__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A sp. 1,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087094__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A sp. 2,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-25__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus_A,Lactococcus_A sp. 3,Carlino et al. 2024,MAG,NA,cheese_rind_1_t0,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946655.1_ASM394665v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus achengensis,NCBI,RefSeq,GCF_003946655.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946695.1_ASM394669v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus bayanensis,NCBI,RefSeq,GCF_003946695.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007989025.1_ASM798902v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus concavus,NCBI,RefSeq,GCF_007989025.1,Walls of a distilled spirit fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436095.1_ASM143609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus dextrinicus,NCBI,RefSeq,GCF_001436095.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946675.1_ASM394667v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus gannanensis,NCBI,RefSeq,GCF_003946675.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946215.1_ASM394621v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus mulanensis,NCBI,RefSeq,GCF_003946215.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946645.1_ASM394664v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus wuchangensis,NCBI,RefSeq,GCF_003946645.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus curvatus,Whon et al. 2021,complete,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_900258455.1_LFU-MFPC41A28-assembly-v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus fuchuensis,NCBI,RefSeq,GCF_900258455.1,Vacuum-packaged beef,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436415.1_ASM143641v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus graminis,NCBI,RefSeq,GCF_001436415.1,Grass silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus sakei,Whon et al. 2021,complete,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.2,Bacteria,Armatimonadota,Fimbriimonadia,Fimbriimonadales,GBS-DC,LDYB01,LDYB01 sp001442985,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF84__bin.30,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia amnigena,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SEM_47_S64.50,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia amnigena_A,This paper,MAG,NA,Viili 48h,dairy,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.28,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia nimipressuralis,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967707__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia sp000016325,Carlino et al. 2024,MAG,NA,beetroot_kvass,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q04-21__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia sp022649305,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0109-002_Lentibacillus_jeotgali_GrbiT,Bacteria,Firmicutes,Bacilli,Bacillales_D,Amphibacillaceae,Lentibacillus,Lentibacillus jeotgali,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_gamma_v1_prok
EBC_084.37,Bacteria,Firmicutes,Bacilli,Bacillales_D,Amphibacillaceae,Lentibacillus,Lentibacillus salicampi,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
GCF_001434735.1_ASM143473v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus buchneri,NCBI,RefSeq,GCF_001434735.1,Tomato pulp,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000785105.2_ASM78510v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus curieae,NCBI,RefSeq,GCF_000785105.2,Stinky tofu brine,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_61__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus dabitei,Carlino et al. 2024,MAG,NA,grana_padano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK062-2-G-48h-05H5_S120__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus diolivorans,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435875.1_ASM143587v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus farraginis,NCBI,RefSeq,GCF_001435875.1,Composting material of distilled shochu residue,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK001T-1-G-00h-05I5_S129__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus hilgardii,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
Imad_L-18.bin.9,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus kefiri,Kothe et al. 2022,MAG,NA,labneh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434135.1_ASM143413v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus kisonensis,NCBI,RefSeq,GCF_001434135.1,Non-salted pickle solution used in production of sunki,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM002_71775__bin.14,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus kribbianus,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF25__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus laojiaonis,Carlino et al. 2024,MAG,NA,ceiba_pentandra_seeds_and_cassava_flour,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434145.1_ASM143414v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus otakiensis,NCBI,RefSeq,GCF_001434145.1,Non-salted pickle solution used in production of sunki,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_014879295.1_ASM1487929v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parabuchneri,NCBI,RefSeq,GCF_014879295.1,Whole organism,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005864225.1_ASM586422v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parafarraginis,NCBI,RefSeq,GCF_005864225.1,"Sugar refinery, Switzerland",sugar,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
GCF_002276885.1_ASM227688v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parakefiri,NCBI,RefSeq,GCF_002276885.1,Kefir grain,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_900411375.1_PRJEB20856_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus raoultii,NCBI,RefSeq,GCF_900411375.1,vaginal sample,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436255.1_ASM143625v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus rapi,NCBI,RefSeq,GCF_001436255.1,"Sunki, a Japanese traditional pickle",vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436555.1_ASM143655v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus senioris,NCBI,RefSeq,GCF_001436555.1,Faeces of a healthy 100-year-old Japanese female,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001766745.1_ASM176674v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus sunkii,NCBI,RefSeq,GCF_001766745.1,anaerobic enrichment culture that was inoculated with biogas reactor content,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Leucobacter,Leucobacter sp. 1,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PU007_71775__bin.44,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Leucobacter,Leucobacter sp. 2,Carlino et al. 2024,MAG,NA,puzzone_di_moena,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-29__bin.48,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Leucobacter,Leucobacter sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M7__bin.36,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Leucobacter,Leucobacter sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007954525.1_ASM795452v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc carnosum,NCBI,RefSeq,GCF_007954525.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK028-2-L-48h-03A1_S20__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc citreum,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK002-1-L-48h-01F6_S30__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc falkenbergense,Carlino et al. 2024,MAG,NA,water_kefir_figs_frozen_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000196855.1_ASM19685v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc gasicomitatum,NCBI,RefSeq,GCF_000196855.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000298875.1_ASM29887v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc gelidum,NCBI,RefSeq,GCF_000298875.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_019655995.1_ASM1965599v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc holzapfelii,NCBI,RefSeq,GCF_019655995.1,Ethiopian coffee fermentation,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_019656015.1_ASM1965601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc inhae,NCBI,RefSeq,GCF_019656015.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000092505.1_ASM9250v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc kimchii,NCBI,RefSeq,GCF_000092505.1,Type material of Leuconostoc kimchii,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-23__bin.18,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc lactis,Carlino et al. 2024,MAG,NA,cheese_core_1_t0,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc lactis_A,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_009913915.1_ASM991391v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc mesenteroides,NCBI,RefSeq,GCF_009913915.1,Gochujang,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0067-003_Leuconostoc_mesenteroides_subsp._mesenteroides_CBA3607,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc mesenteroides_B,Whon et al. 2021,NA,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_019656055.1_ASM1965605v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc miyukkimchii,NCBI,RefSeq,GCF_019656055.1,Brown algae kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_019656075.1_ASM1965607v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc palmae,NCBI,RefSeq,GCF_019656075.1,Palm wine,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_016127255.1_ASM1612725v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc pseudomesenteroides,NCBI,RefSeq,GCF_016127255.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_019656095.1_ASM1965609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc rapi,NCBI,RefSeq,GCF_019656095.1,Spoiled sous-vide-cooked rutabaga,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_086.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc sp. 1,This paper,MAG,NA,Potato Kimchi,vegetable,United States of America,"Montana, United States of America",prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087088__bin.11,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc sp. 2,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF81__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc sp900554745,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK031-1-L-48h-03B2_S30__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc suionicum,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004354645.1_ASM435464v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc_B,Leuconostoc_B fallax,NCBI,RefSeq,GCF_004354645.1,Type material of Leuconostoc fallax,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434835.1_ASM143483v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus acidifarinae,NCBI,RefSeq,GCF_001434835.1,Artisanal wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946085.1_ASM394608v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus angrenensis,NCBI,RefSeq,GCF_003946085.1,fermented dairy beverage,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003124125.1_ASM312412v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus bambusae,NCBI,RefSeq,GCF_003124125.1,Traditional fermented bamboo shoots,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003813165.1_ASM381316v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus brevis,NCBI,RefSeq,GCF_003813165.1,Faeces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946245.1_ASM394624v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus cerevisiae,NCBI,RefSeq,GCF_003946245.1,Spoiled beer,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007115095.1_ASM711509v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus enshiensis,NCBI,RefSeq,GCF_007115095.1,fermented vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5653374__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus faecigallinarum,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946335.1_ASM394633v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus fujinensis,NCBI,RefSeq,GCF_003946335.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946395.1_ASM394639v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus fuyuanensis,NCBI,RefSeq,GCF_003946395.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434395.1_ASM143439v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus hammesii,NCBI,RefSeq,GCF_001434395.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946145.1_ASM394614v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus huananensis,NCBI,RefSeq,GCF_003946145.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435525.1_ASM143552v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus koreensis,NCBI,RefSeq,GCF_001435525.1,Cabbage kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LandisEA_2021__SRS5652995__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus lanxiensis,Carlino et al. 2024,MAG,NA,sourdough_starter,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946095.1_ASM394609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus lindianensis,NCBI,RefSeq,GCF_003946095.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946045.1_ASM394604v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus mulengensis,NCBI,RefSeq,GCF_003946045.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434785.1_ASM143478v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus namurensis,NCBI,RefSeq,GCF_001434785.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434055.1_ASM143405v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus parabrevis,NCBI,RefSeq,GCF_001434055.1,Cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437125.1_ASM143712v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus paucivorans,NCBI,RefSeq,GCF_001437125.1,Brewery environment,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436675.1_ASM143667v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus senmaizukei,NCBI,RefSeq,GCF_001436675.1,"Senmaizuke, a Japanese pickle",vegetable,Japan,Japan,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967722__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus sp.,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
FS47_2017_noduplicates_bin.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus sp. 2,Leech et al. 2020,MAG,NA,brussels sprout kimchi,vegetable,Ireland,Ireland,prokaryote,MiFoDB_gamma_v1_prok
GCF_000965255.1_ASM96525v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus spicheri,NCBI,RefSeq,GCF_000965255.1,Rice sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004115745.1_ASM411574v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus suantsaii,NCBI,RefSeq,GCF_004115745.1,"suan-tsai, a traditional Taiwanese fermented mustard green",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004745505.1_ASM474550v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus suantsaiihabitans,NCBI,RefSeq,GCF_004745505.1,"suan tsai, fermented vegetables",vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946545.1_ASM394654v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus tangyuanensis,NCBI,RefSeq,GCF_003946545.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946345.1_ASM394634v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus tongjiangensis,NCBI,RefSeq,GCF_003946345.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946265.1_ASM394626v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus yonginensis,NCBI,RefSeq,GCF_003946265.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009295845.1_ASM929584v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus zymae,NCBI,RefSeq,GCF_009295845.1,Artisanal wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_900116935.1_Chromosome_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus acidipiscis,NCBI,RefSeq,GCF_900116935.1,Kopanisti cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436215.1_ASM143621v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus agilis,NCBI,RefSeq,GCF_001436215.1,Municipal sewage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434535.1_ASM143453v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus animalis,NCBI,RefSeq,GCF_001434535.1,Dental plaque of baboon,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434405.1_ASM143440v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus apodemi,NCBI,RefSeq,GCF_001434405.1,Faeces of wild Japanese wood mouse,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435375.1_ASM143537v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus araffinosus,NCBI,RefSeq,GCF_001435375.1,Intestine of chicken,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436315.1_ASM143631v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus aviarius,NCBI,RefSeq,GCF_001436315.1,Faeces of chicken,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000423245.1_ASM42324v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus ceti,NCBI,RefSeq,GCF_000423245.1,Lungs of a beaked whale,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000504525.1_Lactobacillus_equi_DPC_6820_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus equi,NCBI,RefSeq,GCF_000504525.1,Faeces of horses,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_41__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus excrementavium,Carlino et al. 2024,MAG,NA,pecorino_di_venosa,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_029889745.1_ASM2988974v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus faecis,NCBI,RefSeq,GCF_029889745.1,Swine feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434455.1_ASM143445v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus hayakitensis,NCBI,RefSeq,GCF_001434455.1,Faeces of thoroughbred horse,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436015.1_ASM143601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus murinus,NCBI,RefSeq,GCF_001436015.1,Intestine of rat,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_007991295.1_ASM799129v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus pobuzihii,NCBI,RefSeq,GCF_007991295.1,Pobuzih (fermented cummingcordia),NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436475.1_ASM143647v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus ruminis,NCBI,RefSeq,GCF_001436475.1,Bovine rumen,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000317165.1_O1P2RL8_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus saerimneri,NCBI,RefSeq,GCF_000317165.1,Pig faeces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003864415.1_ASM386441v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus salitolerans,NCBI,RefSeq,GCF_003864415.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435955.1_ASM143595v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus salivarius,NCBI,RefSeq,GCF_001435955.1,Saliva,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-29__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Limnobacter,Limnobacter sp002954425,Carlino et al. 2024,MAG,NA,cheese_rind_1_t45,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_016900115.1_ASM1690011v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus alvi,NCBI,RefSeq,GCF_016900115.1,Chicken gizzard,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435475.1_ASM143547v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus antri,NCBI,RefSeq,GCF_001435475.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_014635905.1_ASM1463590v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus caviae,NCBI,RefSeq,GCF_014635905.1,Type material of Lactobacillus caviae,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000161935.1_ASM16193v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus coleohominis_A,NCBI,RefSeq,GCF_000161935.1,Vaginal urogenital tract,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435245.1_ASM143524v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus equigenerosi,NCBI,RefSeq,GCF_001435245.1,Faeces of thoroughbred horse,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115052__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus fermentum,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_008876665.1_ASM887666v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus frumenti,NCBI,RefSeq,GCF_008876665.1,Rye-bran sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF18__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus gallistercoris,Carlino et al. 2024,MAG,NA,millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434365.1_ASM143436v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus gastricus,NCBI,RefSeq,GCF_001434365.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001293735.1_LgorillaeKZ01T_1.0_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus gorillae,NCBI,RefSeq,GCF_001293735.1,Gorilla feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000312405.1_ASM31240v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus ingluviei,NCBI,RefSeq,GCF_000312405.1,"Pigeon, crop",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF41__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus merdavium,Carlino et al. 2024,MAG,NA,millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967703__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus mucosae,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_025311495.1_ASM2531149v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus oris,NCBI,RefSeq,GCF_025311495.1,Chicken feces,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__P-22__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus panis,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009428965.1_ASM942896v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus pontis,NCBI,RefSeq,GCF_009428965.1,Rye sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003703885.1_ASM370388v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus reuteri,NCBI,RefSeq,GCF_003703885.1,Rat host,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437055.1_ASM143705v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus secaliphilus,NCBI,RefSeq,GCF_001437055.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF23__bin.7,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus sp.,Carlino et al. 2024,MAG,NA,palm_tree,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_900240275.1_PRJEB20106_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus timonensis,NCBI,RefSeq,GCF_900240275.1,Human gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_025311515.1_ASM2531151v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus vaginalis,NCBI,RefSeq,GCF_025311515.1,Vaginal swab,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436755.1_ASM143675v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus aquaticus,NCBI,RefSeq,GCF_001436755.1,Surface of a eutrophic freshwater pond,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436735.1_ASM143673v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus cacaonum,NCBI,RefSeq,GCF_001436735.1,Cocoa bean heap fermentation,seed,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434915.1_ASM143491v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus capillatus,NCBI,RefSeq,GCF_001434915.1,Fermented  brine used for stinky tofu production,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK047-2-G-48h-04C5_S123__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus ghanensis,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK029-2-G-48h-04A5_S105__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus hordei,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_009184705.1_ASM918470v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus mali,NCBI,RefSeq,GCF_009184705.1,Apple juice from cider press,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK036-2-L-48h-03D6_S52__bin.7,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus mali_A,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK006-2-G-48h-01C9_S6__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus nagelii,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436275.1_ASM143627v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus oeni,NCBI,RefSeq,GCF_001436275.1,Bobal wine,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435195.1_ASM143519v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus satsumensis,NCBI,RefSeq,GCF_001435195.1,Shochu mash,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK059-2-L-08h-04H2_S36__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus sp.,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436705.1_ASM143670v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus sucicola,NCBI,RefSeq,GCF_001436705.1,Sap of an Oak tree,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434935.1_ASM143493v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus uvarum,NCBI,RefSeq,GCF_001434935.1,Must of Bobal grape variety,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435395.1_ASM143539v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus vini,NCBI,RefSeq,GCF_001435395.1,Must of grape,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0133-001_Listeria_monocytogenes_N11-2542,Bacteria,Firmicutes,Bacilli,Lactobacillales,Listeriaceae,Listeria,Listeria monocytogenes,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920550__bin.32,Bacteria,Bacillota,Bacilli,Lactobacillales,Listeriaceae,Listeria,Listeria sp.,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946275.1_ASM394627v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus backii,NCBI,RefSeq,GCF_003946275.1,Spoiled lager beer,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434575.1_ASM143457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus bifermentans,NCBI,RefSeq,GCF_001434575.1,Blown cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405165.1_ASM540516v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus binensis,NCBI,RefSeq,GCF_005405165.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002706425.1_ASM270642v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus coryniformis,NCBI,RefSeq,GCF_002706425.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003950295.1_ASM395029v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus iwatensis,NCBI,RefSeq,GCF_003950295.1,Orchardgrass (Dactylis glomerata L.) silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946445.1_ASM394644v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus jiayinensis,NCBI,RefSeq,GCF_003946445.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_5__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus rennini,Carlino et al. 2024,MAG,NA,castelmagno,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003946385.1_ASM394638v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus zhaoyuanensis,NCBI,RefSeq,GCF_003946385.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.38,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Rhodanobacteraceae,Luteibacter,Luteibacter sp000745005,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__671_Grayson__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Luteimonas_D,Luteimonas_D sp.,Carlino et al. 2024,MAG,NA,grayson,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.38,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Luteimonas_D,Luteimonas_D sp023423235,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF52__bin.1,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Lysinibacillus,Lysinibacillus boronitolerans,Carlino et al. 2024,MAG,NA,iru_woro;locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Lysobacter_F,Lysobacter_F thermophilus,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-18__bin.28,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Macrococcus,Macrococcus sp002438305,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__Q-16__bin.12,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Macrococcus_B,Macrococcus_B bohemicus,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2627__bin.3,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Macrococcus_B,Macrococcus_B caseolyticus,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562501__bin.6,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus lentus,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562502__bin.3,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus sciuri,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-15-M11__bin.27,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS08-29__bin.48,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus vitulinus,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
Escobar-ZepedaA_2016__SRR2081070__bin.4,Bacteria,Firmicutes,Bacilli,Lactobacillales,Carnobacteriaceae,Marinilactibacillus,Marinilactibacillus piezotolerans_A,Pasolli et al. 2020,MAG,NA,Cotija cheese,dairy,Mexico,Mexico,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_100__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Marinilactibacillus,Marinilactibacillus psychrotolerans,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-06-AD__bin.22,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.31,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-BD__bin.32,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__679_Raclette__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 5,Carlino et al. 2024,MAG,NA,raclette,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-12D__bin.20,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 6,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__DC18-032__bin.18,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp. 7,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-22__bin.32,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Oleiphilaceae,Marinobacter,Marinobacter sp001858325,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.21,Bacteria,Bacillota,Bacilli,Bacillales_H,Marinococcaceae,Marinococcus,Marinococcus sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.3,Bacteria,Bacillota,Bacilli,Bacillales_H,Marinococcaceae,Marinococcus,Marinococcus sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS06-22__bin.15,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Marinomonadaceae,Marinomonas,Marinomonas polaris,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-29__bin.28,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Marinomonadaceae,Marinomonas,Marinomonas sp.,Carlino et al. 2024,MAG,NA,cheese_rind_1_t30,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466789__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Marinomonadaceae,Marinomonas,Marinomonas sp012726345,Carlino et al. 2024,MAG,NA,brie,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0127-001_Megasphaera_cerevisiae_NSB1,Bacteria,Firmicutes_C,Negativicutes,Veillonellales,Megasphaeraceae,Megasphaera,Megasphaera cerevisiae,Whon et al. 2021,draft,NA,beer,grains,Canada,Canada,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.34,Bacteria,Bacillota_C,Negativicutes,Veillonellales,Megasphaeraceae,Megasphaera,Megasphaera elsdenii,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2136_73322__bin.14,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Mesonia,Mesonia putidus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-22__bin.24,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Mesonia,Mesonia sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.38,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Mesonia,Mesonia sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.13,Bacteria,Firmicutes,Bacilli,Bacillales_A,Planococcaceae,Metalysinibacillus,Metalysinibacillus alkalisoli,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-16__bin.43,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Beijerinckiaceae,Methylobacterium,Methylobacterium sp001422985,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__950_Rush_Creek__bin.5,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium gubbeenense,Carlino et al. 2024,MAG,NA,rush_creek_reserve,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q02-23__bin.9,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium lacticum,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R13.bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 1,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.14,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 2,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920550__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 3,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-30__bin.14,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 4,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M7__bin.47,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 5,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2517__bin.2,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 6,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-05-BG__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 7,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 8,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__TA011_71775__bin.10,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 9,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-06-AD__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 10,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB12-F-AR__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp. 11,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0080-002_Microbacterium_sp._CBA3102,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp000800925,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.9,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp001792815,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-28__bin.25,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp900163665,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-29__bin.36,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium stercoravium,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FI010_71775__bin.25,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Micropruina,Micropruina glycogenica,Carlino et al. 2024,MAG,NA,finocchiona,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.1,Bacteria,Patescibacteria,Saccharimonadia,Saccharimonadales,UBA1547,Microsaccharimonas,Microsaccharimonas sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967740__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Aquaspirillaceae,Microvirgula,Microvirgula aerodenitrificans,Carlino et al. 2024,MAG,NA,beet_kvass,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF27__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Mixta,Mixta sp.,Carlino et al. 2024,MAG,NA,full_fat_milk_whole_milk_white_vinegar_salt,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803195__bin.38,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Moellerella,Moellerella sp.,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_133.12,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Moellerella,Moellerella wisconsensis,This paper,MAG,NA,Queens SF Mukeunji,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2603__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Moraxella_A,Moraxella_A cinereus,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.25,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Moraxella_A,Moraxella_A sp002478835 subsp. 1,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2619__bin.31,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Moraxella_A,Moraxella_A sp002478835 subsp. 2,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0157-001_Morganella_morganii_FAM24091,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Morganella,Morganella morganii_A,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_37__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Morganella,Morganella psychrotolerans,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_59__bin.18,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Morganella,Morganella psychrotolerans_B,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-16__bin.24,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Mucilaginibacter,Mucilaginibacter sp. 1,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.12,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Mucilaginibacter,Mucilaginibacter sp. 2,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-29__bin.13,Bacteria,Actinomycetota,Actinomycetia,Streptosporangiales,Streptosporangiaceae,Murinocardiopsis,Murinocardiopsis sp.,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Mycetocola_B,Mycetocola_B reblochoni,Whon et al. 2021,draft,NA,cheese,dairy,China,China,prokaryote,MiFoDB_gamma_v1_prok
GCF_002102175.1_ASM210217v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Mycobacterium,Mycobacterium gastri,NCBI,RefSeq,GCF_002102175.1,gastric lavage,NA,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
Imad_S-8.bin.4,Bacteria,Firmicutes,Bacilli,Mycoplasmatales,Metamycoplasmataceae,Mycoplasmopsis,Mycoplasmopsis agalactiae,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0030-002_Natrinema_sp._CBA1119,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Natrialbaceae,Natrinema,Natrinema sp002572525,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0034-002_Haloterrigena_jeotgali_A29,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Natrialbaceae,Natrinema,Natrinema thermotolerans,Whon et al. 2021,NA,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0102-004_Natronomonas_sp._CBA1123,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Natronomonas,Natronomonas sp009741925,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_008330805.1_ASM833080v1_genomic,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Neisseriaceae,Neisseria,Neisseria meningitidis,NCBI,RefSeq,GCF_008330805.1,invasive meningococcal disease,NA,Sweden,Sweden,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-22__bin.17,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Nesterenkonia,Nesterenkonia halophila,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.19,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Nesterenkonia,Nesterenkonia koreensis,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB03-30__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Nesterenkonia,Nesterenkonia sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-22__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Nesterenkonia,Nesterenkonia sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-1G__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Nesterenkonia,Nesterenkonia sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK069-1-L-08h-05C8_S78__bin.4,Bacteria,Bacillota,Bacilli,Bacillales,DSM-18226,Niallia,Niallia sp.,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-2D__bin.34,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Nocardioidaceae,Nocardioides,Nocardioides sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.36,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Nocardioidaceae,Nocardioides,Nocardioides sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_110.6,Bacteria,Actinobacteriota,Actinomycetia,Streptosporangiales,Streptosporangiaceae,Nocardiopsis,Nocardioides sp. 3,This paper,MAG,NA,Larger cheese wheel Reiss,dairy,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-08-BD__bin.39,Bacteria,Actinomycetota,Actinomycetia,Streptosporangiales,Streptosporangiaceae,Nocardiopsis,Nocardioides sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-2D__bin.28,Bacteria,Actinomycetota,Actinomycetia,Streptosporangiales,Streptosporangiaceae,Nocardiopsis,Nocardiopsis sp900143625,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF83__bin.9,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Nosocomiicoccus,Nosocomiicoccus stercorigallinarum,Carlino et al. 2024,MAG,NA,parkia_biglobosa_seeds,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939593__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Novacetimonas,Novacetimonas entanii,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967715__bin.5,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Novosphingobium,Novosphingobium sp.,Carlino et al. 2024,MAG,NA,water_kefir_lemon,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-M15__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Aeromonadaceae,Oceanisphaera,Oceanisphaera sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.27,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Oceanobacillus,Oceanobacillus indicireducens,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.10,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Oceanobacillus,Oceanobacillus sp.,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
PothakosV_2020__ERS2068299__bin.14,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Ochrobactrum_A,Ochrobactrum_A pseudogrignonensis,Carlino et al. 2024,MAG,NA,coffee_arabica,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000241055.1_ASM24105v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus kitaharae,NCBI,RefSeq,GCF_000241055.1,Type material of Oenococcus kitaharae,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_020510245.1_ASM2051024v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus oeni,NCBI,RefSeq,GCF_020510245.1,Wine,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004102045.2_ASM410204v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus sicerae,NCBI,RefSeq,GCF_004102045.2,Apple juice in fermentation (cider),fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK015-2-L-48h-02C6_S84__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus sp.,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967723__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus sp004010835,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-30__bin.32,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Dermatophilaceae,Ornithinicoccus,Ornithinicoccus sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.4,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Paenalcaligenes,Paenalcaligenes sp012518715,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK008-2-G-48h-01D2_S8__bin.1,Bacteria,Bacillota,Bacilli,Paenibacillales,Paenibacillaceae,Paenibacillus,Paenibacillus polymyxa_C,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050145__bin.9,Bacteria,Bacillota,Bacilli,Paenibacillales,Paenibacillaceae,Paenibacillus,Paenibacillus sp. 1,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050145__bin.6,Bacteria,Bacillota,Bacilli,Paenibacillales,Paenibacillaceae,Paenibacillus,Paenibacillus sp. 2,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.6,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Paenochrobactrum,Paenochrobactrum gallinarii,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.19,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Palleronia,Palleronia sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.32,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea agglomerans,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_140.10,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea brenneri,This paper,MAG,NA,Wild Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
SEM_44_S61.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea sp.,This paper,MAG,NA,Tempeh 0h,soy,United States of America,"Los Angeles, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2623__bin.59,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea sp900215435,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF17__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Paraburkholderia,Paraburkholderia tropica,Carlino et al. 2024,MAG,NA,millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.9,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Paracoccus,Paracoccus marcusii,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.20,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Paracoccus,Paracoccus sp.,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437205.1_ASM143720v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paralactobacillus,Paralactobacillus selangorensis,NCBI,RefSeq,GCF_001437205.1,Type material of Lactobacillus selangorensis,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_11__bin.15,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Cellulomonadaceae,Paraoerskovia,Paraoerskovia sp.,Carlino et al. 2024,MAG,NA,pecorino,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-29__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus hokkaidonensis,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405145.1_ASM540514v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus kaifaensis,NCBI,RefSeq,GCF_005405145.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_008632615.1_ASM863261v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus nenjiangensis,NCBI,RefSeq,GCF_008632615.1,Fermented vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434315.1_ASM143431v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus oligofermentans,NCBI,RefSeq,GCF_001434315.1,Broiler leg,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434475.1_ASM143447v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus suebicus,NCBI,RefSeq,GCF_001434475.1,Apple mash,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436295.1_ASM143629v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus vaccinostercus,NCBI,RefSeq,GCF_001436295.1,Cow dung,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_7__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus wasatchensis,Carlino et al. 2024,MAG,NA,canestrato_foggiano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0128-001_Pectinatus_frisingensis_MB139,Bacteria,Firmicutes_C,Negativicutes,Selenomonadales,Selenomonadaceae,Pectinatus,Pectinatus frisingensis,Whon et al. 2021,draft,NA,beer,grains,Singapore,Singapore,prokaryote,MiFoDB_gamma_v1_prok
GCF_013127755.1_ASM1312775v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus acidilactici,NCBI,RefSeq,GCF_013127755.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF49__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus acidilactici_A,Carlino et al. 2024,MAG,NA,milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437605.1_ASM143760v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus argentinicus,NCBI,RefSeq,GCF_001437605.1,Fermented wheat flour,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001438655.1_ASM143865v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus cellicola,NCBI,RefSeq,GCF_001438655.1,Distilled-spirit-fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001702215.1_ASM170221v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus claussenii,NCBI,RefSeq,GCF_001702215.1,Brewery environment,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001611155.1_ASM161115v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus damnosus,NCBI,RefSeq,GCF_001611155.1,Winery environment,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437405.1_ASM143740v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus ethanolidurans,NCBI,RefSeq,GCF_001437405.1,Walls of a distilled-spirit-fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002982135.1_ASM298213v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus inopinatus,NCBI,RefSeq,GCF_002982135.1,Brewery yeast,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967740__bin.10,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus parvulus,Carlino et al. 2024,MAG,NA,beet_kvass,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000014505.1_ASM1450v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus pentosaceus,NCBI,RefSeq,GCF_000014505.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001437075.1_ASM143707v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus stilesii,NCBI,RefSeq,GCF_001437075.1,Type material of Pediococcus stilesii,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.43,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Pedobacter,Pedobacter sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.30,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Pedobacter,Pedobacter sp001424305,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.33,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Pedobacter,Pedobacter suwonensis,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Devosiaceae,Pelagibacterium,Pelagibacterium sp002723255,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R03-19__bin.21,Bacteria,Bacillota_A,Clostridia,Peptostreptococcales,Peptostreptococcaceae,Peptostreptococcus,Peptostreptococcus sp.,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_918814575.1_ASM91881457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella fabaria,NCBI,RefSeq,GCF_918814575.1,"Cocoa bean fermentation, Ghana",seed,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
GCF_918814755.1_ASM91881475v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella ghanensis,NCBI,RefSeq,GCF_918814755.1,"Cocoa bean fermentation, Ghana",seed,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF81__bin.6,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella sp.,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C05-16__bin.14,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Vibrionaceae,Photobacterium,Photobacterium carnosum,Carlino et al. 2024,MAG,NA,cured_meat_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_42__bin.14,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Phyllobacterium,Phyllobacterium calauticae,Carlino et al. 2024,MAG,NA,caciotta_sarda,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.11,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Bacteroidaceae,Prevotella,Prevotella faecis,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.4,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Bacteroidaceae,Prevotella,Prevotella sp000434975,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967715__bin.1,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Propionibacterium,Propionibacterium cyclohexanicum,Carlino et al. 2024,MAG,NA,water_kefir_lemon,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
QuigleyL_2016__ERS654082__bin.8,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Propionibacterium,Propionibacterium freudenreichii,Carlino et al. 2024,MAG,NA,continental-type_cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK061-2-G-48h-05H4_S119__bin.2,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Propionibacterium,Propionibacterium sp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2172_73322__bin.4,Bacteria,Actinomycetota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Propionibacterium,Propionibacterium sp. 2,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562500__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus cibarius,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_089.16,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus mirabilis,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R4__bin.7,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus sp.,Pasolli et al. 2020,MAG,NA,"cheese, hard cheese",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
C-R06.bin.10,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus vulgaris,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
C-R06.bin.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Providencia,Providencia rettgeri_A,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF73__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pseudescherichia,Pseudescherichia sp002918705,Carlino et al. 2024,MAG,NA,finger_millet,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466737__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Pseudoalteromonas,Pseudoalteromonas distincta,Carlino et al. 2024,MAG,NA,stretched-curd_cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS06-22__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Alteromonadaceae,Pseudoalteromonas,Pseudoalteromonas nigrifaciens,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__mgm4524496__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Pseudoalteromonas,Pseudoalteromonas sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Auvergne, France",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.1,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Pseudochrobactrum,Pseudochrobactrum saccharolyticum,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.32,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Pseudoclavibacter,Pseudoclavibacter helvolus,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-M7__bin.64,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Pseudoclavibacter,Pseudoclavibacter sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.8,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Microbacteriaceae,Pseudoclavibacter,Pseudoclavibacter sp. 2,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MilaniC_2019__SRR7587240__bin.19,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Pseudoclavibacter_A,Pseudoclavibacter_A sp008831235,Pasolli et al. 2020,MAG,NA,parmesan cheese,dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF10__bin.10,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 1,Carlino et al. 2024,MAG,NA,locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803195__bin.53,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 2,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803193__bin.1,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 3,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.11,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 4,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ZhaoCC_2020__SRS5803192__bin.21,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 5,Carlino et al. 2024,MAG,NA,hongeo,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.3,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp. 6,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF43__bin.5,Bacteria,Bacillota,Bacilli,Bacillales_D,Amphibacillaceae,Pseudogracilibacillus,Pseudogracilibacillus sp012518125,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2235_73323__bin.20,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas aeruginosa,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SEM_41_S58.18,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_B,Pseudomonas_B oryzihabitans_B,This paper,MAG,NA,Kimchi brine 48h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__O-25.1__bin.33,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E alloputida,Carlino et al. 2024,MAG,NA,cheese_rind_1_t30,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS09-25__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E azotoformans_A,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-26.1__bin.18,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E bubulae,Carlino et al. 2024,MAG,NA,cheese_rind_2_t15,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB15-20__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E canadensis,Carlino et al. 2024,MAG,NA,milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_112__bin.21,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E chengduensis_A,Carlino et al. 2024,MAG,NA,salame_felino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967699__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E endophytica,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920554__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E fluorescens_AN,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-20__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E fragi,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS07-20__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E fragi_D,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050145__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E graminis_B,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q04-26__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E haemolytica,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__D9__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E helleri,Carlino et al. 2024,MAG,NA,milk_kefir,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_16__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E iridis,Carlino et al. 2024,MAG,NA,fiore_sardo,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_111__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E juntendi,Carlino et al. 2024,MAG,NA,salame_piacentino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2476__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E lactis,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__CS001_71775__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E lundensis,Carlino et al. 2024,MAG,NA,caciocavallo_silano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.21,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E marginalis_C,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967699__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E orientalis_A,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2191_73322__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E paracarnis subsp. 1,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF54__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E paracarnis subsp. 2,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF27__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E parafulva_B,Carlino et al. 2024,MAG,NA,full_fat_milk_whole_milk_white_vinegar_salt,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__F04-16__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E paraversuta,Carlino et al. 2024,MAG,NA,sausage_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967690__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E peli,Carlino et al. 2024,MAG,NA,rye_bread_and_sugar_kvass,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2502__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E pergaminensis,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_28__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E proteolytica,Carlino et al. 2024,MAG,NA,pecorino_toscano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_080.10,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E putida,This paper,MAG,NA,Dofu mold,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_114__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E shahriarae,Carlino et al. 2024,MAG,NA,brie,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2633__bin.16,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E shirazensis,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E simiae,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_111__bin.14,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp. 1,Carlino et al. 2024,MAG,NA,salame_piacentino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SalvettiE_2016__SRS1050145__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp. 2,Carlino et al. 2024,MAG,NA,vitis_vinifera_l_cv_corvina_grape_withering,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2224_73323__bin.3,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp. 3,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967699__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp003014915,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2184_73322__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp012985465,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115053__bin.26,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E sp024349685,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115052__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_K,Pseudomonas_K sp.,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS15-30__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter alimentarius_A,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-22__bin.24,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter aquimaris,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2584__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter celer,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB01-22__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter faecalis,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
BertuzziAS_2018__ERS2032120__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter glacincola_A,Carlino et al. 2024,MAG,NA,cheddar,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R32__bin.3,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter namhaensis,Pasolli et al. 2020,MAG,NA,"cheese, smoked cheese",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C07-19__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter pasteurii,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466737__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter piscatorii,Carlino et al. 2024,MAG,NA,stretched-curd_cheese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-29__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter piscatorii_A,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_2__bin.6,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 1,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2135_73322__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2578__bin.9,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 3,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-M15__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.41,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 5,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-22__bin.58,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 6,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.35,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 7,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GR002_73417__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp. 8,Carlino et al. 2024,MAG,NA,grana_padano,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R03-19__bin.22,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp000511655,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KastmanEK_2016__CSB694__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp014861365,Carlino et al. 2024,MAG,NA,cheese_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R46__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp014861395,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C06-17__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter urativorans_C,Carlino et al. 2024,MAG,NA,cured_meat_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-AG__bin.31,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus halocasei,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS01-22__bin.26,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.15,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.48,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus sp. 3,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.21,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_55__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Psychromonadaceae,Psychromonas,Psychromonas sp.,Carlino et al. 2024,MAG,NA,salame_ungherese,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-BR__bin.32,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Pusillimonas_B,Pusillimonas_B ginsengisoli_A subsp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.29,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_C,Pusillimonas_B,Pusillimonas_B ginsengisoli_A subsp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_147.23,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella aceris,This paper,MAG,NA,Curtido 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q04-21__bin.16,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella inusitata,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967699__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella rivi,Carlino et al. 2024,MAG,NA,NA,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087088__bin.16,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella sp.,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967711__bin.13,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella variigena,Carlino et al. 2024,MAG,NA,dill_dearg,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.25,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella victoriana,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.26,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Rhizobium,Rhizobium sp. 1,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.44,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Rhizobium,Rhizobium sp. 2,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.7,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Rhizobium_A,Rhizobium_A sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS05-30_0__bin.3,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Rhodococcus,Rhodococcus qingshengii,Carlino et al. 2024,MAG,NA,cheese_2_final_product;mozzarella;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.3,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Roseovarius,Roseovarius sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.39,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Roseovarius,Roseovarius sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.6,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia koreensis,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB02-22__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia kristinae,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C07-16__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp. 1,Carlino et al. 2024,MAG,NA,cured_meat_before_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WolfeBE_2014__575_CabotClothbound__bin.2,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp. 2,Carlino et al. 2024,MAG,NA,cabot_clothbound,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C05-18__bin.20,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp. 3,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2608__bin.7,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp. 4,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2610__bin.21,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp000710345,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__A-20__bin.4,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp002418375,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967715__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rouxiella,Rouxiella aceris,Carlino et al. 2024,MAG,NA,water_kefir_lemon,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_2__VB16-29__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Beutenbergiaceae,Ruania,Ruania sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-1D__bin.27,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Beutenbergiaceae,Ruania,Ruania sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_d1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-M16__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Aerococcaceae,Ruoffia,Ruoffia tabacinasalis,Carlino et al. 2024,MAG,NA,ripened_cheese_d2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS13-22__bin.10,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Salegentibacter,Salegentibacter agarivorans,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.26,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Salegentibacter,Salegentibacter sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.5,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Salegentibacter,Salegentibacter sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.60,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Salegentibacter,Salegentibacter sp. 3,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.12,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Salegentibacter,Salegentibacter sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB14-22__bin.50,Bacteria,Bacillota,Bacilli,Staphylococcales,Salinicoccaceae,Salinicoccus,Salinicoccus sp.,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-22__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Salinicola,Salinicola halophyticus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_098.8,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Salinicola,Salinicola salarius_A,This paper,MAG,NA,Cinsoy S-21-V1,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_gamma_v1_prok
EBC_084.34,Bacteria,Proteobacteria,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp. 1,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp. 2,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS07-22__bin.5,Bacteria,Pseudomonadota,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp. 3,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS11-22__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp. 4,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2134_73322__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp. 5,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2138_73322__bin.7,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Vibrionaceae,Salinivibrio,Salinivibrio costicola,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF56__bin.5,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Savagea,Savagea serpentis,Carlino et al. 2024,MAG,NA,parkia_biglobosa_seeds,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF15__bin.6,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Savagea,Savagea sp. 1,Carlino et al. 2024,MAG,NA,melon_seeds,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF47__bin.6,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Savagea,Savagea sp. 2,Carlino et al. 2024,MAG,NA,ceiba_pentandra,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_008694105.1_ASM869410v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus harbinensis,NCBI,RefSeq,GCF_008694105.1,Makgeolli,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435585.1_ASM143558v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus perolens,NCBI,RefSeq,GCF_001435585.1,Orange lemonade,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000469325.1_ASM46932v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus shenzhenensis,NCBI,RefSeq,GCF_000469325.1,Fermented dairy beverage,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001435975.1_ASM143597v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus collinoides,NCBI,RefSeq,GCF_001435975.1,Fermenting apple juice,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001433995.1_ASM143399v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus kimchicus,NCBI,RefSeq,GCF_001433995.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_008033155.1_ASM803315v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus malefermentans,NCBI,RefSeq,GCF_008033155.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002217925.1_ASM221792v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus mixtipabuli,NCBI,RefSeq,GCF_002217925.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001434895.1_ASM143489v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus odoratitofui,NCBI,RefSeq,GCF_001434895.1,Fermented brine used for stinky tofu production,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000740055.1_ASM74005v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus oryzae,NCBI,RefSeq,GCF_000740055.1,Fermented rice grain,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001702155.1_ASM170215v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus paracollinoides,NCBI,RefSeq,GCF_001702155.1,Beer,grains,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002217985.1_ASM221798v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus pentosiphilus,NCBI,RefSeq,GCF_002217985.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004354595.1_ASM435459v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus silagei,NCBI,RefSeq,GCF_004354595.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002583405.1_ASM258340v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus silagincola,NCBI,RefSeq,GCF_002583405.1,Silage,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001436595.1_ASM143659v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus similis,NCBI,RefSeq,GCF_001436595.1,Fermented cane molasses at alcohol plants,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ChaconVargasK_2020__SRS6087091__bin.16,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus sp.,Carlino et al. 2024,MAG,NA,aguamiel_pulque,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_080.9,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia,Serratia marcescens,This paper,MAG,NA,Dofu mold,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_2__P2584__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia_J,Serratia_J grimesii,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS08-29__bin.64,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia_J,Serratia_J liquefaciens,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967741__bin.11,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia_J,Serratia_J proteamaculans,Carlino et al. 2024,MAG,NA,water_kefir_coconut,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-21__bin.39,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Shewanellaceae,Shewanella,Shewanella baltica,Carlino et al. 2024,MAG,NA,whey,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeonardSR_2016__SRS1659775__bin.2,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Siccibacter,Siccibacter turicensis,Carlino et al. 2024,MAG,NA,spinach_spiked_with_stec,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF45__bin.7,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae_C,Siminovitchia,Siminovitchia sp.,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.24,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Muribaculaceae,Sodaliphilus,Sodaliphilus sp004557565,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_100__bin.1,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Specibacter,Specibacter sp. 1,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C06-19__bin.13,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Specibacter,Specibacter sp. 2,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-2G__bin.45,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Sphingobacterium,Sphingobacterium sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.15,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Sphingobacterium,Sphingobacterium sp000814685,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
YulandiA_2020__SRS6115052__bin.6,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Sphingobacterium,Sphingobacterium thalpophilum,Carlino et al. 2024,MAG,NA,tempeh,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__SC012_71775__bin.8,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingobium,Sphingobium sp001713415,Carlino et al. 2024,MAG,NA,soppressata_di_calabria,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__SC012_71775__bin.18,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingobium,Sphingobium yanoikuyae,Carlino et al. 2024,MAG,NA,soppressata_di_calabria,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sp. 1,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.9,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sp. 2,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-16__bin.40,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sp. 3,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-17__bin.10,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sp. 4,Carlino et al. 2024,MAG,NA,pre_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.15,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sp003688625,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-18__bin.32,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas_G,Sphingomonas_G sp.,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_133.14,Bacteria,Firmicutes,Bacilli,Mycoplasmatales,Mycoplasmataceae,Spiroplasma,Spiroplasma citri,This paper,MAG,NA,Queens SF Mukeunji,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK066-2-L-48h-05B8_S69__bin.3,Bacteria,Bacillota,Bacilli,Bacillales_K,Sporolactobacillaceae,Sporolactobacillus,Sporolactobacillus sp. 1,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK069-2-L-48h-05D2_S81__bin.2,Bacteria,Bacillota,Bacilli,Bacillales_K,Sporolactobacillaceae,Sporolactobacillus,Sporolactobacillus sp. 2,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK035-2-G-48h-04B2_S111__bin.2,Bacteria,Bacillota,Bacilli,Bacillales_K,Sporolactobacillaceae,Sporolactobacillus,Sporolactobacillus sp. 3,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK069-1-L-48h-05C9_S79__bin.1,Bacteria,Bacillota,Bacilli,Bacillales_K,Sporolactobacillaceae,Sporolactobacillus,Sporolactobacillus sp024385605,Carlino et al. 2024,MAG,NA,water_kefir_figs_dried_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO013_71775__bin.23,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Sporosarcina,Sporosarcina sp.,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
Vreta_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus arlettae,Kothe et al. 2023a,MAG,NA,Swedish vreta pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus aureus,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2171_73322__bin.8,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus caprae,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_108__bin.7,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus carnosus,Carlino et al. 2024,MAG,NA,salame_felino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_090.9,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus cohnii,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF45__bin.9,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus condimenti,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-25__bin.5,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus epidermidis,Carlino et al. 2024,MAG,NA,cheese_1_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__RC17-F-AR__bin.38,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus equorum,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q06-30__bin.11,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus equorum_A,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
KumarJ_2019__SRS4562503__bin.5,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus gallinarum,Carlino et al. 2024,MAG,NA,kinema,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LiZ_2018__SRS2920551__bin.19,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus kloosii,Carlino et al. 2024,MAG,NA,pu-erh_tea,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_090.4,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus nepalensis,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_gamma_v1_prok
L1.2_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus pasteuri,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF83__bin.7,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus pettenkoferi,Carlino et al. 2024,MAG,NA,parkia_biglobosa_seeds,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q05-26__bin.2,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus rostri,Carlino et al. 2024,MAG,NA,cheese_2_before_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__DC18-F-AR__bin.16,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus saprophyticus,Carlino et al. 2024,MAG,NA,ripened_cheese_a_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_13__bin.14,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus shinii,Carlino et al. 2024,MAG,NA,cacciatore_italiano,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF24__bin.1,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus simulans,Carlino et al. 2024,MAG,NA,locust_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus succinus,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_gamma_v1_prok
PB_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus warneri,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_89__bin.1,Bacteria,Bacillota,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus xylosus,Carlino et al. 2024,MAG,NA,norcino_umbro,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-29__bin.23,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas geniculata,Carlino et al. 2024,MAG,NA,cheese_rind_1_t45,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
C-R06.bin.7,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_A,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.22,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_AA,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SEM_41_S58.19,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_AJ,This paper,MAG,NA,Kimchi brine 48h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_112__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_Q,Carlino et al. 2024,MAG,NA,salame_felino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_112__bin.19,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas nematodicola,Carlino et al. 2024,MAG,NA,salame_felino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PB007_73417__bin.10,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus agalactiae,Carlino et al. 2024,MAG,NA,pecorino_bagnolese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshL_xxxx__H3_S87__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus alactolyticus,Carlino et al. 2024,MAG,NA,milk_kefir_contamined,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2230_73323__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus dysgalactiae,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2017__ERS1739834__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus infantarius,Carlino et al. 2024,MAG,NA,NA,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_104__bin.4,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus macedonicus,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM003_71775__bin.3,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus oralis subsp. 1,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PM012_71775__bin.11,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus oralis subsp. 2,Carlino et al. 2024,MAG,NA,provolone_del_monaco,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_115__bin.29,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus oralis_BG,Carlino et al. 2024,MAG,NA,provola_affumicata,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_101__bin.18,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus parauberis,Carlino et al. 2024,MAG,NA,pecorino_bagnolese,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2017__ERR1981175__bin.3,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus sp.,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_gamma_v1_prok
C-03.Ssa-BR,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus sp003521145,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__M-20__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus suis_AA,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q05-27__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus thermophilus,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS14-28__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus uberis,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466771__bin.2,Bacteria,Actinomycetota,Actinomycetia,Streptomycetales,Streptomycetaceae,Streptomyces,Streptomyces sp.,Carlino et al. 2024,MAG,NA,tomme,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
EBC_113.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Tatumella,Tatumella ptyseos,This paper,MAG,NA,Mad ange pdc,fruit,United States of America,"Carnation, WA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
EBC_035.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Tatumella,Tatumella sp.,This paper,MAG,NA,Stagiaire SB cider,fruit,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
XieM_2019__SAMC044639__bin.26,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Telluria,Telluria timonae,Carlino et al. 2024,MAG,NA,dajiang-meju,legumes,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_MATIS_1__S3-19__bin.1,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Tenacibaculum,Tenacibaculum finnmarkense_A,Carlino et al. 2024,MAG,NA,NA,seafood,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__E-22__bin.8,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Rhodocyclaceae,Tepidiphilus,Tepidiphilus succinatimandens,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0215-003_JABEVO000000000,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus halophilus,Whon et al. 2021,NA,NA,Unknown,NA,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_2__bin.27,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus koreensis,Carlino et al. 2024,MAG,NA,salame_avellino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB07-22__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus muriaticus,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2238_73323__bin.12,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus solitarius,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;interior,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
S3.2_bin.2,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus sp. 1,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__C05-18__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus sp. 2,Carlino et al. 2024,MAG,NA,cured_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DF_58__bin.5,Bacteria,Deinococcota,Deinococci,Deinococcales,Thermaceae,Thermus,Thermus parvatiensis,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ArikanM_2020__ERS1939655__bin.9,Bacteria,Deinococcota,Deinococci,Deinococcales,Thermaceae,Thermus,Thermus scotoductus,Carlino et al. 2024,MAG,NA,kombucha,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_3__VB13-30__bin.23,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae_A,Tissierella_A,Tissierella_A sp. 1,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__KM-5G__bin.38,Bacteria,Bacillota_A,Clostridia,Tissierellales,Tissierellaceae_A,Tissierella_A,Tissierella_A sp. 2,Carlino et al. 2024,MAG,NA,ripened_cheese_c4_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.43,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Rhodobacteraceae,Tranquillimonas,Tranquillimonas rosea,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__R01-19__bin.3,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Actinomycetaceae,Trueperella,Trueperella pyogenes,Carlino et al. 2024,MAG,NA,fresh_meat_after_ripening,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2137_73322__bin.66,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Dysgonomonadaceae,UBA2632,UBA2632 sp. 1,Carlino et al. 2024,MAG,NA,brine,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__FO007_71775__bin.2,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Dysgonomonadaceae,UBA2632,UBA2632 sp. 2,Carlino et al. 2024,MAG,NA,fontina,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF80__bin.2,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Ureibacillus,Ureibacillus thermosphaericus,Carlino et al. 2024,MAG,NA,parkia_biglobosa_seeds,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB12-F-BR__bin.37,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus carniphilus,Carlino et al. 2024,MAG,NA,ripened_cheese_b_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF59__bin.2,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus fluvialis,Carlino et al. 2024,MAG,NA,pentaclehtra_macrophylla_oil_bean,seed,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_CSIC_1__P2249_73323__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus silagei,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__PU007_71775__bin.15,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus sp. 1,Carlino et al. 2024,MAG,NA,puzzone_di_moena,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.32,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus sp. 2,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__GO004_71775__bin.17,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus sp. 3,Carlino et al. 2024,MAG,NA,gorgonzola,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-09-AG__bin.57,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus,Vagococcus sp. 4,Carlino et al. 2024,MAG,NA,ripened_cheese_c2_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF57__bin.8,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus_A,Vagococcus_A lutrae,Carlino et al. 2024,MAG,NA,citrullus_vulgaris,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_1__TA012_71775__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Vagococcaceae,Vagococcus_D,Vagococcus_D salmoninarum,Carlino et al. 2024,MAG,NA,taleggio,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.27,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Variovorax,Variovorax sp. 1,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__J-19__bin.1,Bacteria,Pseudomonadota,Gammaproteobacteria,Burkholderiales,Burkholderiaceae_B,Variovorax,Variovorax sp. 2,Carlino et al. 2024,MAG,NA,post_processed_vegetables,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0160-001_Vibrio_casei_JB196,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio casei,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_2020__ERS3967688__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Vibrionaceae,Vibrio,Vibrio cholerae,Carlino et al. 2024,MAG,NA,wagashi,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R33__bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio hibernica,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
WalshAM_2020__ERS3466749__bin.4,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Vibrionaceae,Vibrio,Vibrio litoralis subsp. 1,Carlino et al. 2024,MAG,NA,mild,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_TEAGASC_1__TGS04-28__bin.21,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales_A,Vibrionaceae,Vibrio,Vibrio litoralis subsp. 2,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;core,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MacoriG_2019__CS_R42__bin.6,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio toranzoniae,Pasolli et al. 2020,MAG,NA,"cheese, mild",dairy,Italy,Italy,prokaryote,MiFoDB_gamma_v1_prok
GCF_005405505.1_ASM540550v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella bombi,NCBI,RefSeq,GCF_005405505.1,Bumblebee gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_018394055.1_ASM1839405v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella ceti,NCBI,RefSeq,GCF_018394055.1,Type material of Weissella ceti,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001951095.1_ASM195109v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella cibaria,NCBI,RefSeq,GCF_001951095.1,Infant saliva,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004771075.1_ASM477107v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella confusa,NCBI,RefSeq,GCF_004771075.1,Cabbage,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0217-003_GCF_025908565.1,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella confusa_B,Whon et al. 2021,NA,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
GCF_014397255.1_ASM1439725v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella diestrammenae,NCBI,RefSeq,GCF_014397255.1,Cricket gut,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000420365.1_ASM42036v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella halotolerans,NCBI,RefSeq,GCF_000420365.1,Sausage,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_012396435.1_ASM1239643v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella hellenica,NCBI,RefSeq,GCF_012396435.1,Dry naturally fermented Greek sausage,meat,Greece,Greece,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0092-002_Weissella_hellenica_wikim14,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella hellenica_B,Whon et al. 2021,draft,NA,kimchi,vegetable,Unknown,Unknown,prokaryote,MiFoDB_gamma_v1_prok
GCF_001438705.1_ASM143870v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella kandleri,NCBI,RefSeq,GCF_001438705.1,Fermented sausages,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella koreensis,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_gamma_v1_prok
DeFilippisF_xxxx__DS_78__bin.5,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella minor,Carlino et al. 2024,MAG,NA,salame_felino,meat,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000691805.2_ASM69180v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella oryzae,NCBI,RefSeq,GCF_000691805.2,Paddy field,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_015689215.1_ASM1568921v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella paramesenteroides,NCBI,RefSeq,GCF_015689215.1,Ensiled sorghum,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003353445.1_ASM335344v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella soli,NCBI,RefSeq,GCF_003353445.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_001932615.1_ASM193261v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella thailandensis,NCBI,RefSeq,GCF_001932615.1,"Jogaejeotgal, a Traditional Korean Fermented Seafood",NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_016908785.1_ASM1690878v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella uvarum,NCBI,RefSeq,GCF_016908785.1,Type material of Weissella uvarum,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_UNINA_2__V-25.1__bin.1,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella viridescens,Carlino et al. 2024,MAG,NA,cheese_rind_1_t15,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_003862435.1_ASM386243v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella viridescens_A,NCBI,RefSeq,GCF_003862435.1,"Bacterial culture, chile",NA,Chile,Chile,prokaryote,MiFoDB_gamma_v1_prok
GCF_025211165.1_ASM2521116v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella_A,Weissella_A beninensis,NCBI,RefSeq,GCF_025211165.1,Fermented cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_004358325.1_ASM435832v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella_A,Weissella_A cryptocerci,NCBI,RefSeq,GCF_004358325.1,Culture,NA,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_000832905.1_ASM83290v1_genomic,Bacteria,Firmicutes,Bacilli,Bacillales_B,Bacillaceae_C,Weizmannia,Weizmannia coagulans,NCBI,RefSeq,GCF_000832905.1,Type strain of Bacillus coagulans,NA,United States of America,United States of America,prokaryote,MiFoDB_gamma_v1_prok
PasolliE_2020__SRS6525471__bin.1,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae_C,Weizmannia,Weizmannia coagulans_A,Carlino et al. 2024,MAG,NA,NA,probiotics,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-29__bin.11,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Williamsia,Williamsia sp. 1,Carlino et al. 2024,MAG,NA,cheese_1_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-30__bin.31,Bacteria,Actinomycetota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Williamsia,Williamsia sp. 2,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q01-30__bin.12,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas campestris,Carlino et al. 2024,MAG,NA,cheese_2_after_ripening;rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
SEM_41_S58.12,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas perforans,This paper,MAG,NA,Kimchi brine 48h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF84__bin.10,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas_A,Xanthomonas_A translucens,Carlino et al. 2024,MAG,NA,cassava,vegetable,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MASTER_WP4_FFoQSI_1__VB-16-M13__bin.18,Bacteria,Actinomycetota,Actinomycetia,Actinomycetales,Micrococcaceae,Yaniella,Yaniella sp.,Carlino et al. 2024,MAG,NA,ripened_cheese_c1_rind,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
AlvarezOrdonezA_xxxx__Q07-20__bin.16,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Yersinia,Yersinia enterocolitica,Carlino et al. 2024,MAG,NA,raw_milk,dairy,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
LeechJ_xxxx__AF55__bin.6,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Zymobacter,Zymobacter palmae,Carlino et al. 2024,MAG,NA,palm_sap,fruit,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK042-1-L-48h-03G1_S74__bin.2,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Zymomonas,Zymomonas mobilis,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_liquid,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK043-2-G-48h-04C1_S119__bin.7,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Zymomonas,Zymomonas mobilis_B,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
MortensenS_xxxx__WK018T-1-G-00h-05I7_S131__bin.4,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Zymomonas,Zymomonas pomaceae,Carlino et al. 2024,MAG,NA,water_kefir_figs_fresh_grain,sugar,NA,NA,prokaryote,MiFoDB_gamma_v1_prok
GCF_002926085.2_CanDuoHae_v1.0_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,[Candida] duobushaemulonis,NCBI,RefSeq,GCF_002926085.2,isolated from human blood,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_026027325.1_ASM2602732v1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Mucoraceae,Actinomucor,Actinomucor elegans,NCBI,GenBank,GCA_026027325.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCF_001642055.1_Altal1_genomic,Eukaryota,Ascomycota,Dothideomycetes,Pleosporales,Pleosporaceae,Alternaria,Alternaria alternata,NCBI,RefSeq,GCF_001642055.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000002655.1_ASM265v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus fumigatus,NCBI,RefSeq,GCF_000002655.1,Lungs of patient,NA,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
GCF_001890805.1_Aspgl1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus glaucus,NCBI,RefSeq,GCF_001890805.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_010724455.1_ASM1072445v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus lentulus,NCBI,RefSeq,GCF_010724455.1,Human isolate,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_016861625.1_AkawachiiIFO4308_assembly01_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus luchuensis,NCBI,RefSeq,GCF_016861625.1,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_000011425.1_ASM1142v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus nidulans,NCBI,RefSeq,GCF_000011425.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000002855.3_ASM285v2_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus niger,NCBI,RefSeq,GCF_000002855.3,NA,NA,Netherlands,Netherlands,eukaryote,MiFoDB_beta_v3_euk
GCF_000184455.2_ASM18445v3_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus oryzae,NCBI,RefSeq,GCF_000184455.2,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCA_008274985.1_ASM827498v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus sojae,NCBI,GenBank,GCA_008274985.1,meju,soy,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_000149615.1_ASM14961v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus terreus,NCBI,RefSeq,GCF_000149615.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_013340325.1_ASM1334032v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus tubingensis,NCBI,RefSeq,GCF_013340325.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_003184745.1_Aspuva1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus uvarum,NCBI,RefSeq,GCF_003184745.1,Holotype of Aspergillus uvarum,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_903819665.1_AWRI4233_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium mustum,NCBI,GenBank,GCA_903819665.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCF_000721785.1_Aureobasidium_pullulans_var._pullulans_EXF-150_assembly_version_1.0_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium pullulans,NCBI,RefSeq,GCF_000721785.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_903853725.1_AWRI4620_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium uvarum,NCBI,GenBank,GCA_903853725.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCA_903819635.1_AWRI4619_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium vineae,NCBI,GenBank,GCA_903819635.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCF_000143535.2_ASM14353v4_genomic,Eukaryota,Ascomycota,Leotiomycetes,Helotiales,Sclerotiniaceae,Botrytis,Botrytis cinerea,NCBI,RefSeq,GCF_000143535.2,NA,NA,Netherlands,Netherlands,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces anomalus YV396,Whon et al. 2021,draft,NA,beer,grains,Belgium,Belgium,eukaryote,MiFoDB_beta_v3_euk
GCF_011074885.1_ASM1107488v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces bruxellensis,NCBI,RefSeq,GCF_011074885.1,Fruit wine,fruit,Australia,Thailand,eukaryote,MiFoDB_beta_v3_euk
GCA_012295355.1_ASM1229535v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces naardenensis,NCBI,GenBank,GCA_012295355.1,lemonde,fruit,Danmark,Denmark,eukaryote,MiFoDB_beta_v3_euk
GCF_000182765.1_ASM18276v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Candida parapsilosis,NCBI,RefSeq,GCF_000182765.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003243815.1_ASM324381v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Spathaspora,Candida sake,NCBI,GenBank,GCA_003243815.1,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_000006335.3_ASM633v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Candida tropicalis,NCBI,RefSeq,GCF_000006335.3,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003709245.3_ASM370924v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Cyberlindnera,Cyberlindnera saturnus,NCBI,GenBank,GCA_003709245.3,Type material of Saccharomyces saturnus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000006445.2_ASM644v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Debaryomyces,Debaryomyces hansenii,NCBI,RefSeq,GCF_000006445.2,Type material of Debaryomyces hansenii,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_023522825.1_DampeI2T2_genomic,Eukaryota,Ascomycota,Sordariomycetes,Diaporthales,Diaporthaceae,Diaporthe,Diaporthe ampelina,NCBI,GenBank,GCA_023522825.1,root,NA,Vietnam,Vietnam,eukaryote,MiFoDB_beta_v3_euk
GCA_005959805.1_ASM595980v1_genomic,Eukaryota,Ascomycota,Dothideomycetes,Myriangiales,Elsinoaceae,Elsinoe,Elsinoe ampelina,NCBI,GenBank,GCA_005959805.1,Vitis vinifera cv. Red Globe,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCF_020744385.1_Fuseq1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Hypocreales,Nectriaceae,Fusarium,Fusarium flagelliforme,NCBI,RefSeq,GCF_020744385.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_013365045.1_LMA-244_clib_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Geotrichum,Geotrichum candidum,NCBI,GenBank,GCA_013365045.1,milk,dairy,Canada,Canada,eukaryote,MiFoDB_beta_v3_euk
GCA_030567255.1_ASM3056725v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora guilliermondii,NCBI,GenBank,GCA_030567255.1,Type material of Hanseniaspora guilliermondii,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_135.6,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora opuntiae,This paper,MAG,NA,Queens SF Lacto Ferm 4% Yellow Peach 8/26/21,vegetable,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_001747045.1_ASM174704v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora osmophila,NCBI,GenBank,GCA_001747045.1,Chardonnay must,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0050-001_Hanseniaspora_uvarum_CBA6001,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora uvarum,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_001664025.1_Hanva1_1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora valbyensis,NCBI,GenBank,GCA_001664025.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_001661395.1_Hypbu1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Hyphopichia,Hyphopichia burtonii,NCBI,RefSeq,GCF_001661395.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_903064755.1_KABA2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania barnettii,NCBI,RefSeq,GCF_903064755.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_031021025.1_ASM3102102v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania exigua,NCBI,GenBank,GCA_031021025.1,NA,NA,United States of America,"CA, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_092.62,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 1,This paper,MAG,NA,Radish kraut,vegetable,United States of America,"Tennessee, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_100.2,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 2,This paper,MAG,NA,"Volcano Kimchi Gochujang, no sugar, 1.5 year",vegetable,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
FS06_2016_noduplicates_bin.2,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 3,Leech et al. 2020,MAG,NA,Orange,sugar,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
FS09_2016_noduplicates_bin.9,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 4,Leech et al. 2020,MAG,NA,Ginger beer,sugar,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
GCA_028408395.1_UA_PF_9_W20_2021_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania servazzii,NCBI,GenBank,GCA_028408395.1,uninoculated grape must,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCA_003708545.1_ASM370854v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania turicensis,NCBI,GenBank,GCA_003708545.1,Type material of Saccharomyces turicensis,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_003708525.2_ASM370852v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania unispora,NCBI,GenBank,GCA_003708525.2,Type material of Saccharomyces unisporus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_024.4,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kluyveromyces,Kluyveromyces marxianus,This paper,MAG,NA,Goat Kefir 60h,dairy,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_004919595.1_Kodohm_148_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Kodamaea,Kodamaea ohmeri,NCBI,GenBank,GCA_004919595.1,Honeybee midgut,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_029632965.1_ASM2963296v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Komagataella,Komagataella pastoris,NCBI,GenBank,GCA_029632965.1,methanol,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_003707275.3_ASM370727v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Kregervanrija,Kregervanrija fluxuum,NCBI,GenBank,GCA_003707275.3,Type material of Debaryomyces fluxuum,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000142805.1_ASM14280v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Lachancea,Lachancea thermotolerans,NCBI,RefSeq,GCF_000142805.1,Type material of Zygosaccharomyces thermotolerans,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000181695.2_ASM18169v2_genomic,Eukaryota,Basidiomycota,Malasseziomycetes,Malasseziales,Malasseziaceae,Malassezia,Malassezia globosa,NCBI,RefSeq,GCF_000181695.2,Culture from type material of Malassezia globosa,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_003290485.1_ASM329048v1_genomic,Eukaryota,Basidiomycota,Malasseziomycetes,Malasseziales,Malasseziaceae,Malassezia,Malassezia restricta,NCBI,RefSeq,GCF_003290485.1,skin environment,NA,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_009932455.1_ASM993245v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Metschnikowiaceae,Metschnikowia,Metschnikowia pulcherrima,NCBI,GenBank,GCA_009932455.1,Fruit,fruit,United Kingdom,"Bath, United Kingdom",eukaryote,MiFoDB_beta_v3_euk
GCA_900106115.1_CBS_141442_assembly_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Metschnikowiaceae,Candida/Metschnikowiaceae,Metschnikowiaceae intermedia,NCBI,GenBank,GCA_900106115.1,NA,NA,Sweden,Sweden,eukaryote,MiFoDB_beta_v3_euk
GCF_000149425.1_ASM14942v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Meyerozyma,Meyerozyma guilliermondii,NCBI,RefSeq,GCF_000149425.1,Type material of Candida guilliermondii,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_002196765.1_ASM219676v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Millerozyma,Millerozyma farinosa,NCBI,GenBank,GCA_002196765.1,nuruk,grains,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_025999795.1_ASM2599979v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Monascus,Monascus purpureus,NCBI,GenBank,GCA_025999795.1,Thai fermented rice,grains,Thailand,Thailand,eukaryote,MiFoDB_beta_v3_euk
GCA_002976275.1_ASM297627v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Monascus,Monascus ruber,NCBI,GenBank,GCA_002976275.1,red yeast rice,grains,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_001599735.1_JCM_2334_assembly_v001_genomic,Eukaryota,Basidiomycota,Tremellomycetes,Filobasidiales,Filobasidiaceae,Naganishia,Naganishia albida,NCBI,GenBank,GCA_001599735.1,Type material of Naganishia albida,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_000002545.3_ASM254v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Nakaseomyces,Nakaseomyces glabratus,NCBI,RefSeq,GCF_000002545.3,Type material of Cryptococcus glabratus,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000182925.2_NC12_genomic,Eukaryota,Ascomycota,Sordariomycetes,Sordariales,Sordariaceae,Neurospora,Neurospora crassa,NCBI,RefSeq,GCF_000182925.2,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_037102815.1_ASM3710281v1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Sordariales,Sordariaceae,Neurospora,Neurospora intermedia,NCBI,GenBank,GCA_037102815.1,endobronchial mass biopsy tissue,NA,Taiwan,Taiwan,eukaryote,MiFoDB_beta_v3_euk
GCA_012922615.1_ASM1292261v1_genomic,Eukaryota,Basidiomycota,Tremellomycetes,Tremellales,Rhynchogastremaceae,Papiliotrema,Papiliotrema laurentii,NCBI,GenBank,GCA_012922615.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_028827035.1_ASM2882703v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium chrysogenum,NCBI,RefSeq,GCF_028827035.1,NA,NA,Denmark,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000769745.1_ASM76974v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium expansum,NCBI,RefSeq,GCF_000769745.1,Rotten apple fruit,fruit,NA,NA,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium roqueforti CECT 2905,Whon et al. 2021,draft,NA,cheese,dairy,Chile,Chile,eukaryote,MiFoDB_beta_v3_euk
GCA_029581925.1_ASM2958192v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia fermentans,NCBI,GenBank,GCA_029581925.1,NA,NA,Canada,Canada,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0051-001_Pichia_kluyveri_CBA6002,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia kluyveri CBA6002,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_003054445.1_ASM305444v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia kudriavzevii,NCBI,RefSeq,GCF_003054445.1,Type material of Candida krusei,NA,Ireland,Ireland,eukaryote,MiFoDB_beta_v3_euk
GCF_001661235.1_Picme2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia membranifaciens,NCBI,RefSeq,GCF_001661235.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_030168465.1_ASM3016846v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia terricola,NCBI,GenBank,GCA_030168465.1,Tannat grapes from Uruguayan vineyards,fruit,Uruguay,Uruguay,eukaryote,MiFoDB_beta_v3_euk
GCA_001695595.3_INRA_Pvit_2_genomic,Eukaryota,Oomycota,unk,Peronosporales,Peronosporaceae,Phytophthora,Plasmopara viticola,NCBI,GenBank,GCA_001695595.3,downy mildew,fruit,France,France,eukaryote,MiFoDB_beta_v3_euk
GCF_002708625.1_Rhimi1_1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus microsporus,NCBI,RefSeq,GCF_002708625.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003325435.1_Razy_CA_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus oligosporus,NCBI,GenBank,GCA_003325435.1,Tempeh,soy,Indonesia,Indonesia,eukaryote,MiFoDB_beta_v3_euk
GCA_024220505.1_ASM2422050v1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus oryzae,NCBI,GenBank,GCA_024220505.1,tabacco leaf,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_000697035.1_RhiStoB9770-1.0_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus stolonifer,NCBI,GenBank,GCA_000697035.1,NA,NA,Germany,Germany,eukaryote,MiFoDB_beta_v3_euk
GCA_024748845.1_ASM2474884v1_genomic,Eukaryota,Basidiomycota,Microbotryomycetes,Sporidiobolales,Sporidiobolaceae,Rhodotorula,Rhodotorula mucilaginosa,NCBI,GenBank,GCA_024748845.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces cerevisiae,Whon et al. 2021,complete,NA,beer,grains,Belgium,Belgium,eukaryote,MiFoDB_beta_v3_euk
FS31_2017_noduplicates_bin.6,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces eubayanus,Leech et al. 2020,MAG,NA,Water kefir hibiscus,sugar,Ireland,Ireland,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0197-001_Saccharomyces_pastorianus_CBS_1513,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces pastorianus CBS 1513,Whon et al. 2021,draft,NA,beer,grains,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_020623625.1_UHD_SCDLUD_16_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Saccharomycodes,Saccharomycodes ludwigii,NCBI,RefSeq,GCF_020623625.1,NA,NA,Germany,Japan,eukaryote,MiFoDB_beta_v3_euk
C-R03.bin.3,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Scheffersomyces stipitis,This paper,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",eukaryote,MiFoDB_beta_v3_euk
GCF_000002945.1_ASM294v2_genomic,Eukaryota,Ascomycota,Schizosaccharomycetes,Schizosaccharomycetales,Schizosaccharomycetaceae,Schizosaccharomyces,Schizosaccharomyces pombe,NCBI,RefSeq,GCF_000002945.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_030020325.1_ASM3002032v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella bacillaris,NCBI,GenBank,GCA_030020325.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_030568935.1_ASM3056893v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella lactis-condensi,NCBI,GenBank,GCA_030568935.1,type material of Torula lactis-condensi,NA,United States of America,"Madison, WI, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_030674195.1_ASM3067419v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella stellata,NCBI,GenBank,GCA_030674195.1,Type material of Saccharomyces stellatus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000243375.1_ASM24337v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Torulaspora,Torulaspora delbrueckii,NCBI,RefSeq,GCF_000243375.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_026184415.1_ASM2618441v1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Hypocreales,NA,Trichothecium,Trichothecium roseum,NCBI,GenBank,GCA_026184415.1,Citrus,fruit,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_030574495.1_ASM3057449v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Trigonopsidaceae,Trigonopsis,Trigonopsis cantarellii,NCBI,GenBank,GCA_030574495.1,Microbe sample from Trigonopsis cantarellii,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000400465.1_Wallemia_ichthyophaga_version_1.0_genomic,Eukaryota,Basidiomycota,Wallemiomycetes,Wallemiales,Wallemiaceae,Wallemia,Wallemia ichthyophaga,NCBI,RefSeq,GCF_000400465.1,Culture from neotype of Wallemia ichthyophaga,NA,Slovenia,"Ljubljana, Slovenia",eukaryote,MiFoDB_beta_v3_euk
GCA_001600375.1_JCM_5958_assembly_v001_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Trichomonascaceae,Wickerhamiella,Wickerhamiella versatilis,NCBI,GenBank,GCA_001600375.1,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_001661255.1_Wican1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Wickerhamomyces,Wickerhamomyces anomalus,NCBI,RefSeq,GCF_001661255.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_030582255.1_ASM3058225v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Wickerhamomyces,Wickerhamomyces subpelliculosus,NCBI,GenBank,GCA_030582255.1,Type material of Pichia subpelliculosa,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_900519055.1_YAGA0_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Yarrowia,Yarrowia galli,NCBI,GenBank,GCA_900519055.1,Type material of Candida galli,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Yarrowia,Yarrowia lipolytica CBA6003,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_949129075.1_ZBA_7846_DN_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces bailii,NCBI,GenBank,GCA_949129075.1,NA,NA,United Kingdom,Japan,eukaryote,MiFoDB_beta_v3_euk
GCA_003707595.2_ASM370759v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces bisporus,NCBI,GenBank,GCA_003707595.2,Type material of Zygosaccharomyces bisporus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_030580515.1_ASM3058051v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces mellis,NCBI,GenBank,GCA_030580515.1,Microbe sample from Zygosaccharomyces mellis,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_001704415.2_ARS1.2_genomic,Eukaryota,Chordata,Mammalia,Artiodactyla,Bovidae,Capra,CapraÊhircus,NCBI,GenBank,GCA_001704415.2,Goat,Goat,UnitedÊStatesÊofÊAmerica,VirginiaÊStateÊUniversity,substrate,MiFoDB_beta_v1_sub
GCA_002263795.3_ARS-UCD1.3_genomic,Eukaryota,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,BosÊtaurus,NCBI,GenBank,GCA_002263795.3,Cow,Cow,UnitedÊStatesÊofÊAmerica,"Nebraska,ÊUnitedÊStatesÊofÊAmerica",substrate,MiFoDB_beta_v1_sub
GCF_000003745.3_12X_genomic,Eukaryota,Streptophyta,Magnoliopsida,Vitales,Vitaceae,Vitis,VitisÊvinifera,NCBI,GenBank,GCA_000003745.2,Grapes,Grapes,NA,Europe,substrate,MiFoDB_beta_v1_sub
GCF_000004515.6_Glycine_max_v4.0_genomic,Eukaryota,Streptophyta,Magnoliopsida,Fabales,Fabaceae,Glycine,GlycineÊmax,NCBI,GenBank,GCA_000004515.5,Soy,Soy,UnitedÊStatesÊofÊAmerica,UnitedÊStatesÊofÊAmerica,substrate,MiFoDB_beta_v1_sub
GCF_000695525.1_BOL_genomic,Eukaryota,Streptophyta,Magnoliopsida,Brassicales,Brassicaceae,Brassica,BrassicaÊoleracea,NCBI,GenBank,GCA_000695525.1,Cabbage,Cabbage,Canada,Canada,substrate,MiFoDB_beta_v1_sub
GCF_001433935.1_IRGSP-1.0_genomic,Eukaryota,Streptophyta,Magnoliopsida,Poales,Poaceae,Oryza,OryzaÊsativa,NCBI,GenBank,GCA_001433935.1,Rice,Rice,Japan,Japan,substrate,MiFoDB_beta_v1_sub
GCF_018294505.1_IWGSC_CS_RefSeq_v2.1_genomic,Eukaryota,Streptophyta,Magnoliopsida,Poales,Poaceae,Triticum,TriticumÊaestivum,NCBI,GenBank,GCA_018294505.1,Wheat,Wheat,UnitedÊStatesÊofÊAmerica,"California,ÊUnitedÊStatesÊofÊAmerica",substrate,MiFoDB_beta_v1_sub