genome,domain,phylum,class,order,family,genus,species,source,assembly,accession,description,substrate,country,origin,assign,database
GCF_000382065.1_ASM38206v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,[Pseudomonas],[Pseudomonas] hibiscicola,NCBI,RefSeq,GCF_000382065.1,plant,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_004359375.1_ASM435937v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Acetilactobacillus,Acetilactobacillus jinshanensis,NCBI,RefSeq,GCF_004359375.1,Type material of Acetilactobacillus jinshanensis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002738225.1_ASM273822v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter pomorum,NCBI,RefSeq,GCF_002738225.1,Type strain of Acetobacter pomorum,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001580945.1_ASM158094v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter tropicalis,NCBI,RefSeq,GCF_001580945.1,NA,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_001499615.1_Acetobacter_senegalensis_108B_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter senegalensis,NCBI,RefSeq,GCF_001499615.1,NA,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
FS45_2017_noduplicates_bin.9,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter malorum,Leech et al. 2020,MAG,NA,"water kefir (pear, ginger, sugar)",sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_011516835.1_ASM1151683v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter musti,NCBI,RefSeq,GCF_011516835.1,Isolated organism,fruit,Belgium,Spain,prokaryote,MiFoDB_beta_v3_prok
FS41_2017_noduplicates_bin.6,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acetobacter,Acetobacter sp.,Leech et al. 2020,MAG,NA,apple cider vinegar,fruit,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_011516735.1_ASM1151673v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter fallax,NCBI,RefSeq,GCF_011516735.1,cider,fruit,Belgium,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_011516875.1_ASM1151687v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter lovaniensis,NCBI,RefSeq,GCF_011516875.1,sewage,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_018256955.1_ASM1825695v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter persici,NCBI,RefSeq,GCF_018256955.1,apple dumpster,NA,United States of America,"Ithaca, NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_011516825.1_ASM1151682v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter oeni,NCBI,RefSeq,GCF_011516825.1,food,NA,Belgium,Portugal,prokaryote,MiFoDB_beta_v3_prok
GCF_002153515.1_ASM215351v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter indonesiensis,NCBI,RefSeq,GCF_002153515.1,compost heap in human home,NA,United States of America,"NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_011516755.1_ASM1151675v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter conturbans,NCBI,RefSeq,GCF_011516755.1,cider,fruit,Belgium,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_006539345.1_ASM653934v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter peroxydans,NCBI,RefSeq,GCF_006539345.1,ditch water,NA,Netherlands,Netherlands,prokaryote,MiFoDB_beta_v3_prok
GCF_007991375.1_ASM799137v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter nitrogenifigens,NCBI,RefSeq,GCF_007991375.1,kombucha tea,sugar,India,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000963925.1_ASM96392v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter cibinongensis,NCBI,RefSeq,GCF_000963925.1,type strain of Acetobacter cibinongensis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_011516935.1_ASM1151693v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter farinalis,NCBI,RefSeq,GCF_011516935.1,food,NA,Belgium,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_000963965.1_ASM96396v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter orientalis,NCBI,RefSeq,GCF_000963965.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_000964225.1_ASM96422v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter syzygii,NCBI,RefSeq,GCF_000964225.1,type strain of Acetobacter syzygii,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_011516885.1_ASM1151688v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter lambici,NCBI,RefSeq,GCF_011516885.1,beer,grains,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_026240055.1_ASM2624005v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter thailandicus,NCBI,RefSeq,GCF_026240055.1,flower,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_022483405.1_ASM2248340v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter fabarum,NCBI,RefSeq,GCF_022483405.1,biological waste material,NA,United States of America,"Madison, WI, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_001580535.1_ASM158053v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter cerevisiae,NCBI,RefSeq,GCF_001580535.1,beer,grains,Canada,Canada,prokaryote,MiFoDB_beta_v3_prok
GCF_004014775.2_ASM401477v2_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter oryzoeni,NCBI,RefSeq,GCF_004014775.2,vinegar,fruit,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_011516765.1_ASM1151676v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter sicerae,NCBI,RefSeq,GCF_011516765.1,NA,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_017377745.1_ASM1737774v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter suratthaniensis,NCBI,RefSeq,GCF_017377745.1,NA,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_002220195.1_ASM222019v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter oryzifermentans,NCBI,RefSeq,GCF_002220195.1,pure culture,NA,United States of America,"MA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_006539325.1_ASM653932v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter orleanensis,NCBI,RefSeq,GCF_006539325.1,beer,grains,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_011516865.1_ASM1151686v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter ghanensis,NCBI,RefSeq,GCF_011516865.1,food,NA,Belgium,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_002173775.1_ASM217377v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter ascendens,NCBI,RefSeq,GCF_002173775.1,NA,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_000379545.1_ASM37954v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter aceti,NCBI,RefSeq,GCF_000379545.1,quick vinegar,fruit,United States of America,"Davis, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_009914215.2_ASM991421v2_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter pasteurianus,NCBI,RefSeq,GCF_009914215.2,whole organism,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_018256975.1_ASM1825697v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter okinawensis,NCBI,RefSeq,GCF_018256975.1,apple dumpster,fruit,United States of America,"Ithaca, NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_000613285.1_ASM61328v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter papayae,NCBI,RefSeq,GCF_000613285.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_025996015.1_ASM2599601v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter estunensis,NCBI,RefSeq,GCF_025996015.1,Generic sample from Acetobacter estunensis NRIC 0472,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_017377715.1_ASM1737771v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acetobacter,Acetobacter sacchari,NCBI,RefSeq,GCF_017377715.1,NA,NA,Vietnam,Vietnam,prokaryote,MiFoDB_beta_v3_prok
GCF_900636675.1_43781_F01_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Achromobacter,Achromobacter spanius,NCBI,RefSeq,GCF_900636675.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016728825.1_ASM1672882v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Achromobacter,Achromobacter xylosoxidans,NCBI,RefSeq,GCF_016728825.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000016725.1_ASM1672v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acidiphilium,Acidiphilium cryptum,NCBI,RefSeq,GCF_000016725.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
C-R09.bin.5,Bacteria,Actinobacteriota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Acidipropionibacterium,Acidipropionibacterium acidipropionici,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
GCF_000964365.1_ASM96436v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Acidisphaera,Acidisphaera rubrifaciens,NCBI,RefSeq,GCF_000964365.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_004346035.1_ASM434603v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Acidomonas,Acidomonas methanolica,NCBI,RefSeq,GCF_004346035.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_023913775.1_ASM2391377v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Comamonadaceae,Acidovorax,Acidovorax facilis,NCBI,RefSeq,GCF_023913775.1,soil sediment,NA,Denmark,Denmark,prokaryote,MiFoDB_beta_v3_prok
EBC_082.8,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter junii,This paper,MAG,NA,Furu #2,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_080.11,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter guillouiae,This paper,MAG,NA,Dofu mold,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
Imad_A-2.bin.9,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Acinetobacter,Acinetobacter johnsonii,Kothe et al. 2022,MAG,NA,ambriss,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
GCF_000196795.1_ASM19679v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter oleivorans,NCBI,RefSeq,GCF_000196795.1,type strain of Acinetobacter oleivorans,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000191145.1_ASM19114v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter pittii,NCBI,RefSeq,GCF_000191145.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_018409485.1_ASM1840948v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter variabilis,NCBI,RefSeq,GCF_018409485.1,human fecal sample,NA,Japan,"Okinawa, Japan",prokaryote,MiFoDB_beta_v3_prok
GCF_002055515.1_ASM205551v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter calcoaceticus,NCBI,RefSeq,GCF_002055515.1,Canola root,NA,Canada,"Ontario, Canada",prokaryote,MiFoDB_beta_v3_prok
GCF_008632635.1_ASM863263v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter baumannii,NCBI,RefSeq,GCF_008632635.1,NA,NA,Singapore,Malaysia,prokaryote,MiFoDB_beta_v3_prok
GCF_000367925.1_Acin_sp_ANC_3994_V1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter bohemicus,NCBI,RefSeq,GCF_000367925.1,NA,NA,Czech Republic,"Lany forestland, Czech Republic",prokaryote,MiFoDB_beta_v3_prok
GCF_019343495.1_ASM1934349v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter lwoffii,NCBI,RefSeq,GCF_019343495.1,chickens,NA,China,"Wenzhou, China",prokaryote,MiFoDB_beta_v3_prok
GCF_000369885.1_Acin_ursi_NIPH_706_V1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter ursingii,NCBI,RefSeq,GCF_000369885.1,NA,NA,Czech Republic,"Pribram, Czech Republic",prokaryote,MiFoDB_beta_v3_prok
GCF_009884975.1_ASM988497v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter dispersus,NCBI,RefSeq,GCF_009884975.1,sputum,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_000413895.1_Acin_rudi_CIP_110305_V1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter rudis,NCBI,RefSeq,GCF_000413895.1,Raw milk,dairy,Israel,Israel,prokaryote,MiFoDB_beta_v3_prok
GCF_000369005.1_Acin_beij_CIP_110307_V1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Acinetobacter,Acinetobacter beijerinckii,NCBI,RefSeq,GCF_000369005.1,human wound,NA,Sweden,"Malmo, Sweden",prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R4__bin.5,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Advenella,Advenella sp003533245,Pasolli et al. 2020,MAG,NA,"cheese, hard cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_000219915.2_ASM21991v3_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Advenella,Advenella kashmirensis,NCBI,RefSeq,GCF_000219915.2,type strain of Tetrathiobacter kashmirensis,NA,India,India,prokaryote,MiFoDB_beta_v3_prok
GCF_004217095.1_ASM421709v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Advenella,Advenella incenata,NCBI,RefSeq,GCF_004217095.1,type strain of Advenella incenata,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
Escobar-ZepedaA_2016__SRR2081070__bin.13,Bacteria,Firmicutes,Bacilli,Lactobacillales,Aerococcaceae,Aerococcus,Aerococcus urinaeequi,Pasolli et al. 2020,MAG,NA,Cotija cheese,dairy,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
Imad_S-7-b.bin.11,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Aeromonadaceae,Aeromonas,Aeromonas caviae,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
GCF_003015165.1_ASM301516v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Aeromonadales,Aeromonadaceae,Aeromonas,Aeromonas rivipollensis,NCBI,RefSeq,GCF_003015165.1,Myocastor coypus,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_000819865.1_PRJEB7029_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Aeromonadales,Aeromonadaceae,Aeromonas,Aeromonas eucrenophila,NCBI,RefSeq,GCF_000819865.1,NA,NA,United States of America,"CT, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_001436375.1_ASM143637v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Agrilactobacillus,Agrilactobacillus composti,NCBI,RefSeq,GCF_001436375.1,Composting material of distilled shochu residue,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946725.1_ASM394672v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Agrilactobacillus,Agrilactobacillus yilanensis,NCBI,RefSeq,GCF_003946725.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_013285525.1_ASM1328552v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Agrobacterium,Agrobacterium pusense,NCBI,RefSeq,GCF_013285525.1,cucumber rhizosphere hyphae,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000442985.1_AtP4V1.0_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Agrobacterium,Agrobacterium fabacearum,NCBI,RefSeq,GCF_000442985.1,tobacco rhizosphere,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003667905.1_ASM366790v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Agrobacterium,Agrobacterium tumefaciens,NCBI,RefSeq,GCF_003667905.1,MIGS Cultured Bacterial,NA,Taiwan,Taiwan,prokaryote,MiFoDB_beta_v3_prok
GCF_004310285.1_ASM431028v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Agrobacterium,Agrobacterium cavarae,NCBI,RefSeq,GCF_004310285.1,corn,grains,Spain,"Leon, Spain",prokaryote,MiFoDB_beta_v3_prok
GCF_003667725.1_ASM366772v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Agrobacterium,Agrobacterium fabrum,NCBI,RefSeq,GCF_003667725.1,prunus,NA,United States of America,"Contra Costa, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524499__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Agrococcus,Agrococcus casei,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCA_036677145.1_ASM3667714v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Alcaligenaceae,Alcaligenaceae bacterium,NCBI,GenBank,GCA_036677145.1,agriculture soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000967305.2_ASM96730v2_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Alcaligenes,Alcaligenes faecalis,NCBI,RefSeq,GCF_000967305.2,nematode,NA,China,"Wuhan, China",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0014-003_Alishewanella_jeotgali_KCTC_22429,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Alishewanella,Alishewanella jeotgali,Whon et al. 2021,draft,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001982605.1_ASM198260v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Alkanindiges,Alkanindiges hydrocarboniclasticus,NCBI,RefSeq,GCF_001982605.1,hydrocarbon contaminated sand,NA,Kuwait,Kuwait,prokaryote,MiFoDB_beta_v3_prok
GCF_000092125.1_ASM9212v1_genomic,Bacteria,Deinococcota,Deinococci,Thermales,Thermaceae,Allomeiothermus,Allomeiothermus silvanus,NCBI,RefSeq,GCF_000092125.1,Hot spring from Portugal,NA,Portugal,Portugal,prokaryote,MiFoDB_beta_v3_prok
GCF_018335475.1_ASM1833547v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Ameyamaea,Ameyamaea chiangmaiensis,NCBI,RefSeq,GCF_018335475.1,red ginger plant,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_001434555.1_ASM143455v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Amylolactobacillus,Amylolactobacillus amylophilus,NCBI,RefSeq,GCF_001434555.1,Swine waste-corn fermentation,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_020538175.1_ASM2053817v1_genomic,Bacteria,Bacillota,Tissierellia,Tissierellales,Sporanaerobacteraceae,Anaerosalibacter,Anaerosalibacter bizertensis,NCBI,RefSeq,GCF_020538175.1,fecal sample,NA,United States of America,"NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524487__bin.4,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Actinomycetaceae,Ancrocorticia,Ancrocorticia populi,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Doubs County, France",prokaryote,MiFoDB_beta_v3_prok
GCF_002993965.1_ASM299396v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus timberlakei,NCBI,RefSeq,GCF_002993965.1,Wild bees and flowers,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435995.1_ASM143599v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus ozensis,NCBI,RefSeq,GCF_001435995.1,"Chrysanthemum, Oze National Park",vegetable,Japan,"Oze National Park, Japan",prokaryote,MiFoDB_beta_v3_prok
GCF_001281175.1_ASM128117v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus apinorum,NCBI,RefSeq,GCF_001281175.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002994005.1_ASM299400v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus quenuiae,NCBI,RefSeq,GCF_002994005.1,Wild bees and flowers,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001433825.1_ASM143382v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus kunkeei,NCBI,RefSeq,GCF_001433825.1,Commercial grape wine undergoing a sluggish/stuck alcoholic fermentation,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_006493595.1_ASM649359v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Apilactobacillus,Apilactobacillus micheneri,NCBI,RefSeq,GCF_006493595.1,Pollen provision,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001447195.1_ASM144719v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,NA,Aquabacterium,Aquabacterium parvum,NCBI,RefSeq,GCF_001447195.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524497__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Arthrobacter_H,Arthrobacter_H sp.,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,France,"Auvergne, France",prokaryote,MiFoDB_beta_v3_prok
GCF_000613845.1_ASM61384v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia astilbis,NCBI,RefSeq,GCF_000613845.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_014635085.1_ASM1463508v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia siamensis,NCBI,RefSeq,GCF_014635085.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_000613885.1_ASM61388v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia prunellae,NCBI,RefSeq,GCF_000613885.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_025995175.1_ASM2599517v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia krungthepensis,NCBI,RefSeq,GCF_025995175.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_001547995.1_ASM154799v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia bogorensis,NCBI,RefSeq,GCF_001547995.1,type material of Asaia bogorensis,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_024054035.1_ASM2405403v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia lannaensis,NCBI,RefSeq,GCF_024054035.1,flower,NA,Belgium,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_000614545.1_ASM61454v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Asaia,Asaia platycodi,NCBI,RefSeq,GCF_000614545.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_011068345.1_ASM1106834v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Atlantibacter,Atlantibacter hermannii,NCBI,RefSeq,GCF_011068345.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001463945.1_ASM146394v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Aurantimonadaceae,Aureimonas,Aureimonas ureilytica,NCBI,RefSeq,GCF_001463945.1,air,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
EBC_040.8,Bacteria,Proteobacteria,Alphaproteobacteria,Rhizobiales,Rhizobiaceae,Aureimonas_A,Aureimonas_A sp001425485,This paper,MAG,NA,Queens Water Kimchi,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_088.5,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus glycinifermentans,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_beta_v3_prok
MS_bin.1,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus amyloliquefaciens,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
EBC_097.14,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus subtilis,This paper,MAG,NA,Cinsoy tamari mother,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0009-005_Bacillus_velezensis_YJ11-1-4,Bacteria,Firmicutes,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus velezensis,Whon et al. 2021,complete,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_023238325.1_ASM2323832v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus inaquosorum,NCBI,RefSeq,GCF_023238325.1,Chinese liquorice,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_002993925.1_ASM299392v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus paralicheniformis,NCBI,RefSeq,GCF_002993925.1,Red Sea lagoons-Microbial mat,NA,Saudi Arabia,Saudi Arabia,prokaryote,MiFoDB_beta_v3_prok
GCF_008807735.1_ASM880773v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus wiedmannii,NCBI,RefSeq,GCF_008807735.1,gills,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_902375605.1_MGYG-HGUT-01501_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus andreraoultii,NCBI,RefSeq,GCF_902375605.1,human gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002074095.1_ASM207409v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus licheniformis,NCBI,RefSeq,GCF_002074095.1,Korean soybean paste,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_009739945.1_ASM973994v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus luti,NCBI,RefSeq,GCF_009739945.1,sea cucumber,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_002250945.2_ASM225094v2_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus cytotoxicus,NCBI,RefSeq,GCF_002250945.2,mashed potatoes,vegetable,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_001050115.1_ASM105011v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus smithii,NCBI,RefSeq,GCF_001050115.1,cheese product,dairy,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_016605985.1_ASM1660598v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus toyonensis,NCBI,RefSeq,GCF_016605985.1,deep-sea sediment,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_001191605.1_ASM119160v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus altitudinis,NCBI,RefSeq,GCF_001191605.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_002220285.1_ASM222028v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus cereus,NCBI,RefSeq,GCF_002220285.1,salad,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_024296885.1_ASM2429688v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus paranthracis,NCBI,RefSeq,GCF_024296885.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_008244765.1_ASM824476v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Bacillus,Bacillus safensis,NCBI,RefSeq,GCF_008244765.1,ginseng seedlings,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_020341675.1_ASM2034167v1_genomic,Bacteria,Bacteroidota,Bacteroidia,Bacteroidales,Bacteroidaceae,Bacteroides,Bacteroides intestinalis,NCBI,RefSeq,GCF_020341675.1,NA,NA,Ireland,"Cork, Ireland",prokaryote,MiFoDB_beta_v3_prok
C-R03.bin.7,Bacteria,Firmicutes,Bacilli,Lactobacillales,Aerococcaceae,Bavariicoccus,Bavariicoccus seileri,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
Escobar-ZepedaA_2016__SRR2081070__bin.26,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium crudilactis,Pasolli et al. 2020,MAG,NA,Cotija cheese,dairy,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
MilaniC_2019__SRR7587240__bin.8,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium mongoliense,Pasolli et al. 2020,MAG,NA,parmesan cheese,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_003030905.1_ASM303090v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium adolescentis,NCBI,RefSeq,GCF_003030905.1,Infant feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000224965.2_ASM22496v2_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium animalis,NCBI,RefSeq,GCF_000224965.2,N/A,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_030218415.1_ASM3021841v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium bifidum,NCBI,RefSeq,GCF_030218415.1,Human urine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000196555.1_ASM19655v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium longum,NCBI,RefSeq,GCF_000196555.1,Type material of Bifidobacterium longum subsp. longum,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001281425.1_ASM128142v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium breve,NCBI,RefSeq,GCF_001281425.1,Infant feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS45_2017_noduplicates_bin.10,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Bifidobacteriaceae,Bifidobacterium,Bifidobacterium aquikefiri,Leech et al. 2020,MAG,NA,"water kefir (pear, ginger, sugar)",sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
FS32_2017_noduplicates_bin.4,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,BOG-930,BOG-930 sp.,Leech et al. 2020,MAG,NA,water kefir lemon,sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_002003665.1_ASM200366v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Bombella,Bombella intestini,NCBI,RefSeq,GCF_002003665.1,bumblebee crop,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_025289935.1_ASM2528993v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Bombella,Bombella apis,NCBI,RefSeq,GCF_025289935.1,bee gut microbiome,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_014048465.1_ASM1404846v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Bombella,Bombella mellum,NCBI,RefSeq,GCF_014048465.1,honeybee,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_014048475.1_ASM1404847v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Bombella,Bombella favorum,NCBI,RefSeq,GCF_014048475.1,Type material of Bombella favorum,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000970795.1_ASM97079v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus mellifer,NCBI,RefSeq,GCF_000970795.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003522965.1_ASM352296v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus bombi,NCBI,RefSeq,GCF_003522965.1,Digestive tract of laboratory-reared bumblebee queens,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000967245.1_ASM96724v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Bombilactobacillus,Bombilactobacillus mellis,NCBI,RefSeq,GCF_000967245.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
C-R06.bin.12,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium alimentarium,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0108-002_Brachybacterium_squillarum_M-6-3T,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium squillarum,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R44__bin.13,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 1,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0208-003_Brachybacterium_kimchii_CBA3104,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium kimchii,Whon et al. 2021,complete,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524498__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium sp. 2,Pasolli et al. 2020,MAG,NA,Natural pasteurized goat cheese,dairy,Spain,"Catalunya, Spain",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524499__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Dermabacteraceae,Brachybacterium,Brachybacterium tyrofermentans,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_003994255.1_ASM399425v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Dermabacteraceae,Brachybacterium,Brachybacterium paraconglomeratum,NCBI,RefSeq,GCF_003994255.1,Type strain of Brachybacterium paraconglomeratum,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
EBC_088.16,Bacteria,Firmicutes,Bacilli,Brevibacillales,Brevibacillaceae,Brevibacillus,Brevibacillus borstelensis,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_beta_v3_prok
C-R14.bin.5,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp004745075,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
BertuzziAS_2018__ERR2212303__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium casei,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524491__bin.8,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 2,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524482__bin.2,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp900169365,Pasolli et al. 2020,MAG,NA,Natural raw cow cheese,dairy,United States of America,"Connecticut, United States of America",prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R28__bin.2,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp004745485,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
BertuzziAS_2018__ERR2212293__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium aurantiacum,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
C-R14.bin.10,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium sp. 1,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
BertuzziAS_2018__ERR2212303__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium linens,Pasolli et al. 2020,MAG,NA,surface ripened cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524499__bin.2,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Brevibacteriaceae,Brevibacterium,Brevibacterium yomogidense_A,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_011617705.1_ASM1161770v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Brevibacteriaceae,Brevibacterium,Brevibacterium limosum,NCBI,RefSeq,GCF_011617705.1,sediment,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001703515.1_ASM170351v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Listeriaceae,Brochothrix,Brochothrix thermosphacta,NCBI,RefSeq,GCF_001703515.1,poultry meat,meat,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_002975235.1_ASM297523v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Brucellaceae,Brucella,Brucella pseudogrignonensis,NCBI,RefSeq,GCF_002975235.1,rotting apple,fruit,Germany,"Kiel, Germany",prokaryote,MiFoDB_beta_v3_prok
GCF_002803535.1_ASM280353v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Brucellaceae,Brucella,Brucella pituitosa,NCBI,RefSeq,GCF_002803535.1,hydrocarbon contaminated sediment,meat,Tunisia,Tunisia,prokaryote,MiFoDB_beta_v3_prok
GCF_015326295.1_ASM1532629v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Brucellaceae,Brucella,Brucella anthropi,NCBI,RefSeq,GCF_015326295.1,plastic debris ocean coast,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_009586235.1_ASM958623v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Burkholderia,Burkholderia cepacia,NCBI,RefSeq,GCF_009586235.1,lake,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
SEM_47_S64.44,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Buttiauxella,Buttiauxella noackiae,This paper,MAG,NA,Viili 48h,dairy,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524487__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Canibacter,Canibacter sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Doubs County, France",prokaryote,MiFoDB_beta_v3_prok
GCF_949790605.1_SF2022_genome_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium,Carnobacterium maltaromaticum,NCBI,RefSeq,GCF_949790605.1,smoked salmon,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_000744825.1_ASM74482v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Carnobacteriaceae,Carnobacterium,Carnobacterium mobile,NCBI,RefSeq,GCF_000744825.1,type strain of Carnobacterium mobile,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0043-002_Natronomonas_sp._CBA1134,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,CBA1134,CBA1134 sp001950595,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_beta_v3_prok
EBC_084.33,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Chromohalobacter,Chromohalobacter sp.,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_023061185.1_ASM2306118v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Oceanospirillales,Halomonadaceae,Chromohalobacter,Chromohalobacter beijerinckii,NCBI,RefSeq,GCF_023061185.1,salted beans,legumes,Germany,Balkans,prokaryote,MiFoDB_beta_v3_prok
GCF_023091965.1_ASM2309196v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Oceanospirillales,Halomonadaceae,Chromohalobacter,Chromohalobacter moromii,NCBI,RefSeq,GCF_023091965.1,lupine-based moromi fermentation,legumes,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_023195755.1_ASM2319575v1_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium nepalense,NCBI,RefSeq,GCF_023195755.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_027920505.1_ASM2792050v1_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium gambrini,NCBI,RefSeq,GCF_027920505.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_026069995.1_ASM2606999v1_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium oranimense,NCBI,RefSeq,GCF_026069995.1,abandoned oil well,NA,Trinidad and Tobago,Trinidad and Tobago,prokaryote,MiFoDB_beta_v3_prok
GCF_012927265.1_ASM1292726v1_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Weeksellaceae,Chryseobacterium,Chryseobacterium cheonjiense,NCBI,RefSeq,GCF_012927265.1,soil,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_9__bin.3,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter freundii,Pasolli et al. 2020,MAG,NA,"cheese, cheddar",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_009648935.1_ASM964893v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter braakii,NCBI,RefSeq,GCF_009648935.1,herbs,NA,United States of America,"MI, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_023374935.1_ASM2337493v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter portucalensis,NCBI,RefSeq,GCF_023374935.1,postoperative intraabdominal drainage liquid,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_030294585.1_ASM3029458v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter youngae,NCBI,RefSeq,GCF_030294585.1,rectal swab,NA,Australia,"Melbourne, Australia",prokaryote,MiFoDB_beta_v3_prok
GCF_004684345.1_ASM468434v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter,Citrobacter tructae,NCBI,RefSeq,GCF_004684345.1,rainbow trout,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
EBC_031.14,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Citrobacter_A,Citrobacter_A amalonaticus,This paper,MAG,NA,Alimentari Aurora red kraut brine,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_009739655.1_ASM973965v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Microbacteriaceae,Clavibacter,Clavibacter michiganensis,NCBI,RefSeq,GCF_009739655.1,tomato,fruit,United States of America,"FL, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_134.5,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium,Clostridium beijerinckii,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_020138775.1_ASM2013877v1_genomic,Bacteria,Bacillota,Clostridia,Eubacteriales,Clostridiaceae,Clostridium,Clostridium perfringens,NCBI,RefSeq,GCF_020138775.1,feces,NA,Finland,Finland,prokaryote,MiFoDB_beta_v3_prok
GCF_900187165.1_52121_G02_genomic,Bacteria,Bacillota,Clostridia,Eubacteriales,Clostridiaceae,Clostridium,Clostridium cochlearium,NCBI,RefSeq,GCF_900187165.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001886875.1_ASM188687v1_genomic,Bacteria,Bacillota,Clostridia,Eubacteriales,Clostridiaceae,Clostridium,Clostridium botulinum,NCBI,RefSeq,GCF_001886875.1,NA,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0172-001_Clostridium_tyrobutyricum_FAM22553,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_B,Clostridium_B tyrobutyricum,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0174-001_Clostridium_botulinum_CDC66089,Bacteria,Firmicutes_A,Clostridia,Clostridiales,Clostridiaceae,Clostridium_F,Clostridium_F botulinum,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_002056725.1_ASM205672v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Comamonadaceae,Comamonas,Comamonas kerstersii,NCBI,RefSeq,GCF_002056725.1,NA,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_016599875.1_ASM1659987v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Comamonadaceae,Comamonas,Comamonas testosteroni,NCBI,RefSeq,GCF_016599875.1,animal waste,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_021026195.1_ASM2102619v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Comamonadaceae,Comamonas,Comamonas koreensis,NCBI,RefSeq,GCF_021026195.1,wetland,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000231445.1_ASM23144v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Commensalibacter,Commensalibacter intestini,NCBI,RefSeq,GCF_000231445.1,drosophila gut,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_002872255.1_ASM287225v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nuruki,NCBI,RefSeq,GCF_002872255.1,nuruk,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946015.1_ASM394601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus insicii,NCBI,RefSeq,GCF_003946015.1,Pork salami,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_006007945.1_ASM600794v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus futsaii,NCBI,RefSeq,GCF_006007945.1,"Fu-tsai, a traditional fermented mustard product",vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946625.1_ASM394662v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kedongensis,NCBI,RefSeq,GCF_003946625.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946515.1_ASM394651v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus zhongbaensis,NCBI,RefSeq,GCF_003946515.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434745.1_ASM143474v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus alimentarius,NCBI,RefSeq,GCF_001434745.1,Marinated fish product,seafood,NA,NA,prokaryote,MiFoDB_beta_v3_prok
EBC_098.21,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus farciminis,This paper,MAG,NA,Cinsoy S-21-V1,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_002762335.1_ASM276233v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus metriopterae,NCBI,RefSeq,GCF_002762335.1,Type material of Lactobacillus terrae,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001971585.1_ASM197158v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus allii,NCBI,RefSeq,GCF_001971585.1,Scallion kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007992055.1_ASM799205v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus mindensis,NCBI,RefSeq,GCF_007992055.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946325.1_ASM394632v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus furfuricola,NCBI,RefSeq,GCF_003946325.1,Rice bran paste,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001050475.1_ASM105047v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus ginsenosidimutans,NCBI,RefSeq,GCF_001050475.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003606365.2_ASM360636v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus zhachilii,NCBI,RefSeq,GCF_003606365.2,Type material of Lactobacillus zhachilii,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003573535.1_ASM357353v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus formosensis,NCBI,RefSeq,GCF_003573535.1,Fermented soybean meal,legumes,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005404815.1_ASM540481v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus huachuanensis,NCBI,RefSeq,GCF_005404815.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946575.1_ASM394657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus jidongensis,NCBI,RefSeq,GCF_003946575.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946605.1_ASM394660v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus baiquanensis,NCBI,RefSeq,GCF_003946605.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434295.1_ASM143429v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus versmoldensis,NCBI,RefSeq,GCF_001434295.1,Poultry salami,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000831645.3_ASM83164v3_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus heilongjiangensis,NCBI,RefSeq,GCF_000831645.3,Chinese pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_004745525.1_ASM474552v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus suantsaicola,NCBI,RefSeq,GCF_004745525.1,"suan tsai, fermented vegetables",vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434585.1_ASM143458v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus crustorum,NCBI,RefSeq,GCF_001434585.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946505.1_ASM394650v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus mishanensis,NCBI,RefSeq,GCF_003946505.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007991935.1_ASM799193v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nantensis,NCBI,RefSeq,GCF_007991935.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434665.1_ASM143466v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus tucceti,NCBI,RefSeq,GCF_001434665.1,Sausage,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS07_2016_noduplicates_bin.20,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus sp.,Leech et al. 2020,MAG,NA,krauthehi (sauerkraut),vegetable,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_001434985.1_ASM143498v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus paralimentarius,NCBI,RefSeq,GCF_001434985.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946555.1_ASM394655v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus hulinensis,NCBI,RefSeq,GCF_003946555.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946205.1_ASM394620v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus keshanensis,NCBI,RefSeq,GCF_003946205.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001438805.1_ASM143880v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kimchiensis,NCBI,RefSeq,GCF_001438805.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435445.1_ASM143544v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus kimchii,NCBI,RefSeq,GCF_001435445.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003967595.1_ASM396759v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus musae,NCBI,RefSeq,GCF_003967595.1,Banana fruits,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001592065.1_ASM159206v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus nodensis,NCBI,RefSeq,GCF_001592065.1,Type material of Lactobacillus nodensis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002179915.1_ASM217991v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus paralimentarius_A,NCBI,RefSeq,GCF_002179915.1,grape variety Bobal,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009600985.1_ASM960098v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Companilactobacillus,Companilactobacillus halodurans,NCBI,RefSeq,GCF_009600985.1,Fermented sausages,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003096575.1_ASM309657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Convivina,Convivina intestini,NCBI,RefSeq,GCF_003096575.1,Type material of Convivina intestini,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003123725.1_ASM312372v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Corticimicrobacter,Corticimicrobacter populi,NCBI,RefSeq,GCF_003123725.1,bark,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R7__bin.6,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 2,Pasolli et al. 2020,MAG,NA,"cheese, cheddar",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R4__bin.6,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium casei,Pasolli et al. 2020,MAG,NA,"cheese, hard cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
C-R13.bin.7,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium variabile,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524488__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium faecigallinarum,Pasolli et al. 2020,MAG,NA,Natural raw cow cheese,dairy,United Kingdom,"Nottinghamshire, UK",prokaryote,MiFoDB_beta_v3_prok
C-R14.bin.7,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium sp. 1,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0110-001_Corynebacterium_nuruki_S6-4,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium nuruki,Whon et al. 2021,draft,NA,alcohol fermentation starter,grains,Unknown,Unknown,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0141-001_Corynebacterium_flavescens_CCUG_28791T,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Corynebacterium,Corynebacterium flavescens,Whon et al. 2021,draft,NA,cheese,dairy,Sweden,Sweden,prokaryote,MiFoDB_beta_v3_prok
GCF_000427865.1_ASM42786v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Corynebacteriaceae,Corynebacterium,Corynebacterium sputi,NCBI,RefSeq,GCF_000427865.1,sputum of a patient with pneumonia,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_016728365.1_ASM1672836v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Corynebacteriaceae,Corynebacterium,Corynebacterium tuberculostearicum,NCBI,RefSeq,GCF_016728365.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000626675.1_ASM62667v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Corynebacteriaceae,Corynebacterium,Corynebacterium glyciniphilum,NCBI,RefSeq,GCF_000626675.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_001941345.1_ASM194134v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Corynebacteriaceae,Corynebacterium,Corynebacterium stationis,NCBI,RefSeq,GCF_001941345.1,seawater,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_030408375.1_ASM3040837v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Corynebacteriaceae,Corynebacterium,Corynebacterium afermentans,NCBI,RefSeq,GCF_030408375.1,blood culture,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
P.1_bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter malonaticus,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
GCF_003516125.1_ASM351612v3_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter sakazakii,NCBI,RefSeq,GCF_003516125.1,feces,NA,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
GCF_001277235.1_ASM127723v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Cronobacter,Cronobacter dublinensis,NCBI,RefSeq,GCF_001277235.1,milk powder production facility,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_017909455.1_ASM1790945v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Microbacteriaceae,Curtobacterium,Curtobacterium flaccumfaciens,NCBI,RefSeq,GCF_017909455.1,mung beans,legumes,Australia,"Queensland, Australia",prokaryote,MiFoDB_beta_v3_prok
GCF_006715175.1_ASM671517v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Microbacteriaceae,Curtobacterium,Curtobacterium citreum,NCBI,RefSeq,GCF_006715175.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003384605.1_ASM338460v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Propionibacteriales,Propionibacteriaceae,Cutibacterium,Cutibacterium namnetense,NCBI,RefSeq,GCF_003384605.1,wound,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_001717565.1_ASM171756v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Propionibacteriales,Propionibacteriaceae,Cutibacterium,Cutibacterium modestum,NCBI,RefSeq,GCF_001717565.1,human oral cavity,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_000376705.1_ASM37670v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Propionibacteriales,Propionibacteriaceae,Cutibacterium,Cutibacterium acnes,NCBI,RefSeq,GCF_000376705.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000018665.1_ASM1866v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Comamonadaceae,Delftia,Delftia acidovorans,NCBI,RefSeq,GCF_000018665.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000725405.1_ASM72540v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Dermacoccaceae,Dermacoccus,Dermacoccus nishinomiyaensis,NCBI,RefSeq,GCF_000725405.1,hot spring,NA,Malaysia,Malaysia,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0107-002_Dietzia_alimentaria_72T,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Dietzia,Dietzia alimentaria,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_beta_v3_prok
GCF_020342335.1_ASM2034233v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Duffyella,Duffyella gerundensis,NCBI,RefSeq,GCF_020342335.1,perennial ryegrass seedlings,NA,New Zealand,New Zealand,prokaryote,MiFoDB_beta_v3_prok
GCF_001758785.1_ASM175878v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Oxalobacteraceae,Duganella,Duganella phyllosphaerae,NCBI,RefSeq,GCF_001758785.1,white clover,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_014192375.1_ASM1419237v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Endobacter,Endobacter medicaginis,NCBI,RefSeq,GCF_014192375.1,NA,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_000697965.2_ASM69796v2_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Rhizobiaceae,Ensifer,Ensifer adhaerens,NCBI,RefSeq,GCF_000697965.2,silty clay loam soil,NA,United States of America,"PA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_024218835.1_ASM2421883v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter hormaechei,NCBI,RefSeq,GCF_024218835.1,Urban soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000534275.1_Ente_cloa_UCI_24_V1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter kobei,NCBI,RefSeq,GCF_000534275.1,urine,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_004331265.1_ASM433126v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter wuhouensis,NCBI,RefSeq,GCF_004331265.1,homo sapiens,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_009036245.1_ASM903624v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter sichuanensis,NCBI,RefSeq,GCF_009036245.1,air,NA,Singapore,Singapore,prokaryote,MiFoDB_beta_v3_prok
GCF_905331265.2_AI2999v1_cpp_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter cloacae,NCBI,RefSeq,GCF_905331265.2,homo sapiens,NA,Spain,Spain,prokaryote,MiFoDB_beta_v3_prok
GCF_001750725.1_ASM175072v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter ludwigii,NCBI,RefSeq,GCF_001750725.1,NA,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_022014715.1_ASM2201471v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter mori,NCBI,RefSeq,GCF_022014715.1,freshwater stream,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_004331385.1_ASM433138v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter quasihormaechei,NCBI,RefSeq,GCF_004331385.1,homo sapiens,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001729805.1_ASM172980v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter roggenkampii,NCBI,RefSeq,GCF_001729805.1,homo sapiens,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_020042625.1_ASM2004262v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter bugandensis,NCBI,RefSeq,GCF_020042625.1,cucumber rhizosphere,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_007035805.1_ASM703580v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter asburiae,NCBI,RefSeq,GCF_007035805.1,river,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_019665745.1_ASM1966574v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter,Enterobacter cancerogenus,NCBI,RefSeq,GCF_019665745.1,Suaeda salsa,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
EBC_144.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Enterobacter_D,Enterobacter_D sp.,This paper,MAG,NA,Red Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0180-001_Enterococcus_faecalis_XJ76305,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus faecalis,Whon et al. 2021,draft,NA,yogurt,dairy,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000157355.2_ASM15735v2_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus casseliflavus,NCBI,RefSeq,GCF_000157355.2,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003320875.1_ASM332087v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus gallinarum,NCBI,RefSeq,GCF_003320875.1,chicken breast meat,meat,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_900474605.1_41594_C01_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus cecorum,NCBI,RefSeq,GCF_900474605.1,chicken,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009734005.1_ASM973400v2_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus faecium,NCBI,RefSeq,GCF_009734005.1,human,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001885995.1_ASM188599v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus italicus,NCBI,RefSeq,GCF_001885995.1,dairy products,dairy,Mongolia,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_002277935.1_ASM227793v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus,Enterococcus durans,NCBI,RefSeq,GCF_002277935.1,Drosophila melanogaster feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0149-001_Enterococcus_malodoratus_DSM_20681,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_A,Enterococcus_A malodoratus,Whon et al. 2021,draft,NA,cheese,dairy,China,China,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0139-001_Enterococcus_lactis_CICC_24101,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Enterococcus_B,Enterococcus_B lactis,Whon et al. 2021,draft,NA,cheese,dairy,France,France,prokaryote,MiFoDB_beta_v3_prok
EBC_080.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia persicina,This paper,MAG,NA,Dofu mold,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_095.37,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia sp003937915,This paper,MAG,NA,Daikon Kasuzuke,vegetable,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_140.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Erwinia,Erwinia sp000599885,This paper,MAG,NA,Wild Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_014773485.1_ASM1477348v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Erwinia,Erwinia aphidicola,NCBI,RefSeq,GCF_014773485.1,pea aphid,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_020683125.1_ASM2068312v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Erwinia,Erwinia rhapontici,NCBI,RefSeq,GCF_020683125.1,celery plant,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000008865.2_ASM886v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Escherichia,Escherichia coli,NCBI,RefSeq,GCF_000008865.2,human gut microflora,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
FS32_2017_noduplicates_bin.11,Bacteria,Firmicutes_A,Clostridia,Oscillospirales,Ethanoligenenaceae,Ethanoligenens,Ethanoligenens sp.,Leech et al. 2020,MAG,NA,water kefir lemon,sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_008693045.1_ASM869304v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Ewingella,Ewingella americana,NCBI,RefSeq,GCF_008693045.1,throat,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
Nixt_bin.2,Bacteria,Firmicutes,Bacilli,Exiguobacterales,Exiguobacteraceae,Exiguobacterium,Exiguobacterium sp902362975,Kothe et al. 2023a,MAG,NA,nixtamalized yellow pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
GCF_001939065.1_ASM193906v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Exiguobacterium,Exiguobacterium,Exiguobacterium indicum,NCBI,RefSeq,GCF_001939065.1,Glacier melt water,NA,India,India,prokaryote,MiFoDB_beta_v3_prok
GCF_003207695.1_ASM320769v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Franconibacter,Franconibacter helveticus,NCBI,RefSeq,GCF_003207695.1,NA,NA,China,New Zeland,prokaryote,MiFoDB_beta_v3_prok
GCF_000242255.2_ASM24225v3_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Rhodanobacteraceae,Frateuria,Frateuria aurantia,NCBI,RefSeq,GCF_000242255.2,golden rayed lily,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_024029915.1_ASM2402991v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus ixorae,NCBI,RefSeq,GCF_024029915.1,Flower (West-Indian jasmine),NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0177-001_Lactobacillus_homohiochii_DSM_20571,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus fructivorans,Whon et al. 2021,draft,NA,sake,grains,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_001702115.1_ASM170211v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus lindneri,NCBI,RefSeq,GCF_001702115.1,Beer,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436035.1_ASM143603v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus sanfranciscensis,NCBI,RefSeq,GCF_001436035.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436645.1_ASM143664v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructilactobacillus,Fructilactobacillus florum,NCBI,RefSeq,GCF_001436645.1,Peony (Paeonia suffruticosa),NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001047075.2_ASM104707v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus ficulneus,NCBI,RefSeq,GCF_001047075.2,Fig,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900112405.1_IMG-taxon_2603880187_annotated_assembly_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus durionis,NCBI,RefSeq,GCF_900112405.1,Type material of Fructobacillus durionis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014489725.1_ASM1448972v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus fructosus,NCBI,RefSeq,GCF_014489725.1,Plant,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001047115.2_ASM104711v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus pseudoficulneus,NCBI,RefSeq,GCF_001047115.2,Fig,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016860625.1_ASM1686062v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Fructobacillus,Fructobacillus tropaeoli,NCBI,RefSeq,GCF_016860625.1,Flower,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_013394005.1_ASM1339400v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus rossiae,NCBI,RefSeq,GCF_013394005.1,Swine gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007989765.1_ASM798976v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus siliginis,NCBI,RefSeq,GCF_007989765.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_029509535.1_ASM2950953v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Furfurilactobacillus,Furfurilactobacillus milii,NCBI,RefSeq,GCF_029509535.1,sourdough,grains,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
C-R02.bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Galactobacter,Galactobacter sp.,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
GCF_902363055.1_MGYG-HGUT-00084_genomic,Bacteria,Bacillota,Clostridia,Eubacteriales,NA,Gemmiger,Gemmiger formicilis,NCBI,RefSeq,GCF_902363055.1,human gut,NA,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_000705495.1_GbsDonk1.0_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Geobacillus,Geobacillus stearothermophilus,NCBI,RefSeq,GCF_000705495.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
EBC_089.14,Bacteria,Firmicutes,Bacilli,Lactobacillales,Aerococcaceae,Globicatella,Globicatella sulfidifaciens,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_013155425.1_ASM1315542v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter entanii,NCBI,RefSeq,GCF_013155425.1,Apple cider vinegar,fruit,Slovenia,Slovenia,prokaryote,MiFoDB_beta_v3_prok
GCF_000021325.1_ASM2132v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter diazotrophicus,NCBI,RefSeq,GCF_000021325.1,type material of Gluconacetobacter diazotrophicus,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014174305.1_ASM1417430v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter johannae,NCBI,RefSeq,GCF_014174305.1,plant,NA,Belgium,Mexico,prokaryote,MiFoDB_beta_v3_prok
GCF_014174255.1_ASM1417425v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter sacchari,NCBI,RefSeq,GCF_014174255.1,plant,NA,Belgium,Australia,prokaryote,MiFoDB_beta_v3_prok
GCF_014174155.1_ASM1417415v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter tumulisoli,NCBI,RefSeq,GCF_014174155.1,soil,NA,Belgium,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_014174375.1_ASM1417437v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter asukensis,NCBI,RefSeq,GCF_014174375.1,stone,NA,Belgium,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_014174165.1_ASM1417416v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter dulcium,NCBI,RefSeq,GCF_014174165.1,plant,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_003350405.1_ASM335040v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter liquefaciens,NCBI,RefSeq,GCF_003350405.1,type strain of Gluconacetobacter liquefaciens,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014174275.1_ASM1417427v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter takamatsuzukensis,NCBI,RefSeq,GCF_014174275.1,soil,NA,Belgium,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_014174355.1_ASM1417435v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconacetobacter,Gluconacetobacter azotocaptans,NCBI,RefSeq,GCF_014174355.1,plant,NA,Belgium,Mexico,prokaryote,MiFoDB_beta_v3_prok
FS44_2017_noduplicates_bin.6,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Gluconobacter,Gluconobacter sp.,Leech et al. 2020,MAG,NA,"water kefir (pear, honey, ginger)",sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_015244665.1_ASM1524466v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter japonicus ,NCBI,RefSeq,GCF_015244665.1,kombucha tea,sugar,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_006538885.1_ASM653888v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter roseus,NCBI,RefSeq,GCF_006538885.1,persimmon,fruit,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_015244705.1_ASM1524470v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter potus,NCBI,RefSeq,GCF_015244705.1,kombucha,sugar,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_002005485.1_ASM200548v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter albidus,NCBI,RefSeq,GCF_002005485.1,water kefir ,sugar,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000234355.1_ASM23435v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter morbifer,NCBI,RefSeq,GCF_000234355.1,drosophila gut,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_007988905.1_ASM798890v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter kanchanburiensis,NCBI,RefSeq,GCF_007988905.1,fermented fruit,fruit,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_018256475.1_ASM1825647v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter cerinus,NCBI,RefSeq,GCF_018256475.1,Drosophila melanogaster in apple dumpster,NA,United States of America,"Ithaca, NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_016757795.1_ASM1675779v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter sphaericus,NCBI,RefSeq,GCF_016757795.1,Campbell Early grape,fruit,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_015244675.1_ASM1524467v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter cerevisiae,NCBI,RefSeq,GCF_015244675.1,beer,grains,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_001580835.1_ASM158083v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter thailandicus,NCBI,RefSeq,GCF_001580835.1,rotting pear,NA,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_000583855.1_ASM58385v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter oxydans,NCBI,RefSeq,GCF_000583855.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_007988885.1_ASM798888v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter wancherniae,NCBI,RefSeq,GCF_007988885.1,seed,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_002723995.1_ASM272399v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter kondonii,NCBI,RefSeq,GCF_002723995.1,strawberry,fruit,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_009547075.1_ASM954707v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter aidae,NCBI,RefSeq,GCF_009547075.1,Pineapple,fruit,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_002723955.1_ASM272395v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Gluconobacter,Gluconobacter frateurii,NCBI,RefSeq,GCF_002723955.1,strawberry,fruit,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
EBC_111.13,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter ardleyensis,This paper,MAG,NA,Pink small cheese Reiss,dairy,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0158-001_Glutamicibacter_arilaitensis_JB182,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Glutamicibacter,Glutamicibacter arilaitensis,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_001889445.1_ASM188944v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Granulibacter,Granulibacter bethesdensis,NCBI,RefSeq,GCF_001889445.1,human,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R36__bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia paralvei,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_011617105.1_ASM1161710v1_genomic,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia alvei,NCBI,RefSeq,GCF_011617105.1,Plant rhizosphere,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0138-001_Hafnia_alvei_B16-3,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Hafnia,Hafnia alvei_B,Whon et al. 2021,draft,NA,cheese,dairy,France,France,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0033-002_Haladaptatus_cibarius_D43,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haladaptataceae,Haladaptatus,Haladaptatus cibarius,Whon et al. 2021,NA,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0038-005_Halapricum_salinum_CBA1105,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Halapricum,Halapricum salinum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0097-004_Halapricum_sp._CBA1109,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Halapricum,Halapricum sp009741825,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0044-002_Halarchaeum_sp._CBA1220,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halarchaeum,Halarchaeum grantii,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0039-005_Haloarcula_marismortui_CBA1127,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula sp001485575,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0041-005_Haloarcula_hispanica_CBA1128,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula hispanica,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0055-001_Haloarcula_sp._CBA1129,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Haloarcula,Haloarcula sp008729015,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0105-003_Halobacterium_sp._CBA1126,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halobacteriaceae,Halobacterium,Halobacterium sp009741975,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0035-005_Halobellus_rufus_CBA1103,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halobellus,Halobellus rufus,Whon et al. 2021,NA,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0111-001_Halococcus_sediminicola_CBA1101,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Halococcaceae,Halococcus,Halococcus sediminicola,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0084-004_Haloferax_sp._CBA1150,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674625,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0083-001_Haloferax_sp._CBA1149,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674585,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0082-001_Haloferax_sp._CBA1148,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloferax,Haloferax sp009674605,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0103-004_Halogeometricum_sp._CBA1124,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halogeometricum,Halogeometricum rufum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0036-005_Halolamina_rubra_CBA1107,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halolamina,Halolamina rubra,Whon et al. 2021,NA,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0046-001_Halolamina_salina_CBA1230,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halolamina,Halolamina sp002025255,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001282785.1_halo7_genomic,Archaea,Euryarchaeota,Halobacteria,Haloferacales,Halorubraceae,Halolamina,Halolamina sediminis,NCBI,RefSeq,GCF_001282785.1,solar salt,salt,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R46__bin.9,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp900163645,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524488__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 2,Pasolli et al. 2020,MAG,NA,Natural raw cow cheese,dairy,United Kingdom,"Nottinghamshire, UK",prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R30__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp. 1,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0142-001_Halomonas_nigrificans_MBT_G8648,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas nigrificans,Whon et al. 2021,draft,NA,cheese,dairy,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R7__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Halomonas,Halomonas sp002332255,Pasolli et al. 2020,MAG,NA,"cheese, cheddar",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_016859375.1_ASM1685937v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Oceanospirillales,Halomonadaceae,Halomonas,Halomonas venusta,NCBI,RefSeq,GCF_016859375.1,NA,NA,Mexico,"HI, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0098-002_Haloplanus_sp._CBA1112,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Haloplanus,Haloplanus rubicundus,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_003336245.1_ASM333624v1_genomic,Archaea,Euryarchaeota,Halobacteria,Haloferacales,Haloferacaceae,Haloplanus,Haloplanus salinus,NCBI,RefSeq,GCF_003336245.1,crystallizer pond of Yinggehai marine solar saltern,salt,South Korea,China,prokaryote,MiFoDB_beta_v3_prok
GCF_014219065.1_ASM1421906v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Halopseudomonas,Halopseudomonas xiamenensis,NCBI,RefSeq,GCF_014219065.1,human,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000009185.1_ASM918v1_genomic,Archaea,Euryarchaeota,Halobacteria,Haloferacales,Haloferacaceae,Haloquadratum,Haloquadratum walsbyi,NCBI,RefSeq,GCF_000009185.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0081-002_Halorubrum_halophilum_CBA1147,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp003990725,Whon et al. 2021,draft,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0048-002_Halorubrum_sp._CBA1232,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum trapanicum_A,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0104-003_Halorubrum_sp._CBA1125,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp009742825,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0045-003_Halorubrum_sp._CBA1229,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum sp003721435,Whon et al. 2021,draft,NA,solar salt,salt,NA,Unknown,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0037-006_Halorubrum_halophilum_B8,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloferacaceae,Halorubrum,Halorubrum halophilum,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0100-002_Halostella_salina_CBA1114,Archaea,Halobacteriota,Halobacteria,Halobacteriales,QS-9-68-17,Halostella,Halostella salina,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_003364315.1_ASM336431v1_genomic,Bacteria,Campylobacterota,Epsilonproteobacteria,Campylobacterales,Helicobacteraceae,Helicobacter,Helicobacter ganmani,NCBI,RefSeq,GCF_003364315.1,feces,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_000526655.1_ASM52665v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Heyndrickxia,Heyndrickxia ginsengihumi,NCBI,RefSeq,GCF_000526655.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_018332875.1_ASM1833287v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Heyndrickxia,Heyndrickxia oleronia,NCBI,RefSeq,GCF_018332875.1,honey,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_001436605.1_ASM143660v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Holzapfelia,Holzapfelia floricola,NCBI,RefSeq,GCF_001436605.1,Flower of Caltha palustris,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_022171985.1_ASM2217198v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Huaxiibacter,Huaxiibacter chinensis,NCBI,RefSeq,GCF_022171985.1,sputum,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_40__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Idiomarina,Idiomarina sp.,Pasolli et al. 2020,MAG,NA,"cheese, stretched-curd cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
EBC_089.11,Bacteria,Proteobacteria,Gammaproteobacteria,Cardiobacteriales,Wohlfahrtiimonadaceae,Ignatzschineria,Ignatzschineria cameli,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_004025845.1_ASM402584v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Intrasporangiaceae,Janibacter,Janibacter hoylei,NCBI,RefSeq,GCF_004025845.1,Jet Propulsion Laboratory,NA,India,India,prokaryote,MiFoDB_beta_v3_prok
GCF_903994065.1_CIP111751_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Jeotgalicoccus,Jeotgalicoccus coquinae,NCBI,RefSeq,GCF_903994065.1,NA,NA,France,"Paris, France",prokaryote,MiFoDB_beta_v3_prok
GCF_004216755.1_ASM421675v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Alcaligenaceae,Kerstersia,Kerstersia gyiorum,NCBI,RefSeq,GCF_004216755.1,type strain of Kerstersia gyiorum,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
WalshAM_2017__ERR1981169__bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella pneumoniae,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
EBC_134.7,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella variicola,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
PfeferT_2018__SRR6514658__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella grimontii,Pasolli et al. 2020,MAG,NA,cheese,dairy,Unknown,Unknown,prokaryote,MiFoDB_beta_v3_prok
EBC_134.6,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Klebsiella,Klebsiella michiganensis,This paper,MAG,NA,Queens SF Lacto Ferm Serrano,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_026241935.1_ASM2624193v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kluyvera,Kluyvera cryocrescens,NCBI,RefSeq,GCF_026241935.1,swab of cloaca of migratory bird,NA,United States of America,"NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_009649915.1_ASM964991v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kluyvera,Kluyvera intermedia,NCBI,RefSeq,GCF_009649915.1,flower,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_014218705.1_ASM1421870v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kluyvera,Kluyvera sichuanensis,NCBI,RefSeq,GCF_014218705.1,type strain of Kluyvera sichuanensis,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001275345.1_ASM127534v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Kocuria,Kocuria palustris,NCBI,RefSeq,GCF_001275345.1,culture contaminant,NA,United States of America,"MO, United States of America ",prokaryote,MiFoDB_beta_v3_prok
GCF_008831305.1_ASM883130v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Kocuria,Kocuria coralli,NCBI,RefSeq,GCF_008831305.1,coral reef seawater,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_004563945.1_ASM456394v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Kocuria,Kocuria rhizophila,NCBI,RefSeq,GCF_004563945.1,root nodule,NA,United States of America,"NH, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_002173515.1_ASM217351v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter europaeus,NCBI,RefSeq,GCF_002173515.1,NA,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_004006375.1_ASM400637v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter xylinus,NCBI,RefSeq,GCF_004006375.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003311635.1_ASM331163v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter cocois,NCBI,RefSeq,GCF_003311635.1,Coconut milk,fruit,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003207895.1_ASM320789v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter swingsii,NCBI,RefSeq,GCF_003207895.1,organic apple juice,fruit,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_014843995.1_ASM1484399v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter hansenii,NCBI,RefSeq,GCF_014843995.1,Tibicos,sugar,Russia,Russia,prokaryote,MiFoDB_beta_v3_prok
GCF_000817255.2_ASM81725v2_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter intermedius,NCBI,RefSeq,GCF_000817255.2,Kombucha,sugar,Brazil,Brazil,prokaryote,MiFoDB_beta_v3_prok
GCF_006538185.1_ASM653818v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter diospyri,NCBI,RefSeq,GCF_006538185.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_002009295.1_ASM200929v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter nataicola,NCBI,RefSeq,GCF_002009295.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000182745.2_ASM18274v1_genomic,Bacteria,Proteobacteria,Alphaproteobacteria,Acetobacterales,Acetobacteraceae,Komagataeibacter,Komagataeibacter medellinensis,NCBI,RefSeq,GCF_000182745.2,Type strain of Komagataeibacter medellinensis,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_018491655.1_ASM1849165v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter oboediens,NCBI,RefSeq,GCF_018491655.1,kombucha tea,sugar,Brazil,Brazil,prokaryote,MiFoDB_beta_v3_prok
GCF_011611525.1_ASM1161152v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter rhaeticus,NCBI,RefSeq,GCF_011611525.1,"SCOBY, Kombucha tea",sugar,India,India,prokaryote,MiFoDB_beta_v3_prok
GCF_003403295.1_ASM340329v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter melaceti,NCBI,RefSeq,GCF_003403295.1,apple cider vinegar,fruit,Slovenia,Slovenia,prokaryote,MiFoDB_beta_v3_prok
GCF_003207865.1_ASM320786v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter sucrofermentans,NCBI,RefSeq,GCF_003207865.1,black cherry,fruit,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_000613305.1_ASM61330v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter kakiaceti,NCBI,RefSeq,GCF_000613305.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_004348195.1_ASM434819v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Komagataeibacter,Komagataeibacter saccharivorans,NCBI,RefSeq,GCF_004348195.1,fruit fly,NA,Belgium,Germany,prokaryote,MiFoDB_beta_v3_prok
EBC_082.15,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kosakonia,Kosakonia cowanii,This paper,MAG,NA,Furu #2,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_015167415.1_ASM1516741v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Kosakonia,Kosakonia pseudosacchari,NCBI,RefSeq,GCF_015167415.1,rice leaves,grains,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_001787355.1_ASM178735v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Kozakia,Kozakia baliensis,NCBI,RefSeq,GCF_001787355.1,millet,grains,Indonesia,Indonesia,prokaryote,MiFoDB_beta_v3_prok
GCF_001458555.1_JGI_assembly_genomic,Bacteria,Bacteroidota,Kryptonia,Kryptoniales,Kryptoniaceae,Kryptonium,Kryptonium tengchongense,NCBI,RefSeq,GCF_001458555.1,Hot springs,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003660425.1_ASM366042v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Kurthia,Kurthia gibsonii,NCBI,RefSeq,GCF_003660425.1,spinach leaf,vegetable,India,"West Bengal, India",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0135-001_Lactobacillus_rhamnosus_DPC_7102,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus rhamnosus,Whon et al. 2021,draft,NA,cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_001436135.1_ASM143613v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus thailandensis,NCBI,RefSeq,GCF_001436135.1,Fermented tea leaves (miang),vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946175.1_ASM394617v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus suibinensis,NCBI,RefSeq,GCF_003946175.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946305.1_ASM394630v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus porcinae,NCBI,RefSeq,GCF_003946305.1,Traditional Vietnamese nem chua,meat,Vietnam,Vietnam,prokaryote,MiFoDB_beta_v3_prok
GCF_001436115.1_ASM143611v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus brantae,NCBI,RefSeq,GCF_001436115.1,Faeces of Canada goose,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946485.1_ASM394648v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus jixianensis,NCBI,RefSeq,GCF_003946485.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946165.1_ASM394616v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus baoqingensis,NCBI,RefSeq,GCF_003946165.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946115.1_ASM394611v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus daqingensis,NCBI,RefSeq,GCF_003946115.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000155515.2_ASM15551v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus paracasei,NCBI,RefSeq,GCF_000155515.2,Pasteurized milk,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900492555.1_CECT9104_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus zeae,NCBI,RefSeq,GCF_900492555.1,Corn steep liquor,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000829055.1_ASM82905v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus casei,NCBI,RefSeq,GCF_000829055.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001591865.1_ASM159186v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus pantheris,NCBI,RefSeq,GCF_001591865.1,Jaguar faeces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436615.1_ASM143661v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus camelliae,NCBI,RefSeq,GCF_001436615.1,Fermented tea leaves (miang),vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434705.1_ASM143470v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus nasuensis,NCBI,RefSeq,GCF_001434705.1,Sudan grass Sorghum sudanense (piper) silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_018363075.1_ASM1836307v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus chiayiensis,NCBI,RefSeq,GCF_018363075.1,Raw milk,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437465.1_ASM143746v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus saniviri,NCBI,RefSeq,GCF_001437465.1,Type material of Lactobacillus saniviri,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009184845.1_ASM918484v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus manihotivorans,NCBI,RefSeq,GCF_009184845.1,Cassava sour starch fermentation,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436225.1_ASM143622v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus sharpeae,NCBI,RefSeq,GCF_001436225.1,Municipal sewage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946405.1_ASM394640v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus yichunensis,NCBI,RefSeq,GCF_003946405.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004010095.1_ASM401009v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus hulanensis,NCBI,RefSeq,GCF_004010095.1,pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946025.1_ASM394602v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus songhuajiangensis,NCBI,RefSeq,GCF_003946025.1,Chinese traditional pickle and sourdough,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946465.1_ASM394646v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lacticaseibacillus,Lacticaseibacillus hegangensis,NCBI,RefSeq,GCF_003946465.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS29_2017_noduplicates_bin.6,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus sp. 2,Leech et al. 2020,MAG,NA,kimchi,vegetable,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_005405105.1_ASM540510v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus dongliensis,NCBI,RefSeq,GCF_005405105.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405125.1_ASM540512v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus songbeiensis,NCBI,RefSeq,GCF_005405125.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003641185.1_ASM364118v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus pentosus,NCBI,RefSeq,GCF_003641185.1,Type material of Lactobacillus pentosus,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405065.1_ASM540506v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus nangangensis,NCBI,RefSeq,GCF_005405065.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405085.1_ASM540508v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus daowaiensis,NCBI,RefSeq,GCF_005405085.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
NP3.2_bin.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus plantarum,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
GCF_029025825.1_ASM2902582v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus paraplantarum,NCBI,RefSeq,GCF_029025825.1,Fermented pepper,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000498955.2_NMG01_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus fabifermentans,NCBI,RefSeq,GCF_000498955.2,Cocoa bean heap fermentation,seed,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_005405385.1_ASM540538v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus mudanjiangensis,NCBI,RefSeq,GCF_005405385.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405405.1_ASM540540v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus plajomi,NCBI,RefSeq,GCF_005405405.1,Fermented fish,seafood,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS03_2016_noduplicates_bin.6,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus sp. 1,Leech et al. 2020,MAG,NA,boza,grains,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_005404945.1_ASM540494v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus pingfangensis,NCBI,RefSeq,GCF_005404945.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405005.1_ASM540500v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus daoliensis,NCBI,RefSeq,GCF_005405005.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001438845.1_ASM143884v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus xiangfangensis,NCBI,RefSeq,GCF_001438845.1,Chinese pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_005405425.1_ASM540542v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus modestisalitolerans,NCBI,RefSeq,GCF_005405425.1,Fermented fish,seafood,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001039045.1_ASM103904v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactiplantibacillus,Lactiplantibacillus herbarum,NCBI,RefSeq,GCF_001039045.1,Fermented radish,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003151025.1_ASM315102v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kullabergensis,NCBI,RefSeq,GCF_003151025.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002160635.1_ASM216063v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gallinarum,NCBI,RefSeq,GCF_002160635.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002837055.1_ASM283705v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus apis,NCBI,RefSeq,GCF_002837055.1,Stomach of honeybees,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_024397795.1_ASM2439779v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus intestinalis,NCBI,RefSeq,GCF_024397795.1,Intestine of rat,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_017874575.1_ASM1787457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus colini,NCBI,RefSeq,GCF_017874575.1,Type material of Lactobacillus colini,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003173695.1_ASM317369v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus helsingborgensis,NCBI,RefSeq,GCF_003173695.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_006740305.1_ASM674030v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus delbrueckii,NCBI,RefSeq,GCF_006740305.1,Sour grain mash,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003999355.1_ASM399935v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus amylolyticus,NCBI,RefSeq,GCF_003999355.1,Naturally fermented tofu whey,legumes,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009695985.1_ASM969598v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus porci,NCBI,RefSeq,GCF_009695985.1,Swine feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001936235.1_ASM193623v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus jensenii,NCBI,RefSeq,GCF_001936235.1,Human vaginal discharge,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434335.1_ASM143433v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kalixensis,NCBI,RefSeq,GCF_001434335.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
MAG_S8,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kefiranofaciens,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
GCF_000389675.2_ASM38967v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus acidophilus,NCBI,RefSeq,GCF_000389675.2,Human,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002916915.1_ASM291691v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus bombicola,NCBI,RefSeq,GCF_002916915.1,Bumblebee gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002916935.1_ASM291693v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus panisapium,NCBI,RefSeq,GCF_002916935.1,"Bee bread of Apis cerana collected from a hive in Kunming, Chi",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000970755.1_ASM97075v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kimbladii_A,NCBI,RefSeq,GCF_000970755.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009556455.1_ASM955645v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus iners,NCBI,RefSeq,GCF_009556455.1,Human urine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000425905.1_ASM42590v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus psittaci,NCBI,RefSeq,GCF_000425905.1,Lung of parrott,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001433915.1_ASM143391v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus pasteurii,NCBI,RefSeq,GCF_001433915.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009769205.1_ASM976920v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus crispatus,NCBI,RefSeq,GCF_009769205.1,Red junglefowl,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0154-001_Lactobacillus_helveticus_NWC_2_4,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus helveticus,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_024622425.1_ASM2462242v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus rodentium,NCBI,RefSeq,GCF_024622425.1,Wild mouse gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004009905.1_ASM400990v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus xujianguonis,NCBI,RefSeq,GCF_004009905.1,Himalayan marmot,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000194115.1_ASM19411v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus amylovorus,NCBI,RefSeq,GCF_000194115.1,Pig intestine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001433975.1_ASM143397v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus johnsonii,NCBI,RefSeq,GCF_001433975.1,Human blood,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436125.1_ASM143612v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus hominis,NCBI,RefSeq,GCF_001436125.1,Human intestine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000970775.1_ASM97077v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus melliventris,NCBI,RefSeq,GCF_000970775.1,Honey stomach of the honeybee Apis mellifera,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434815.1_ASM143481v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus equicursoris,NCBI,RefSeq,GCF_001434815.1,Healthy thoroughbred racehorse,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436775.1_ASM143677v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus acetotolerans,NCBI,RefSeq,GCF_001436775.1,Fermented Vinegar Broth,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434515.1_ASM143451v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus hamsteri,NCBI,RefSeq,GCF_001434515.1,Faeces of hamster,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436575.1_ASM143657v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gigeriorum,NCBI,RefSeq,GCF_001436575.1,Chicken crop,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_008868535.1_ASM886853v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus gasseri,NCBI,RefSeq,GCF_008868535.1,Human,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434435.1_ASM143443v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus kitasatonis,NCBI,RefSeq,GCF_001434435.1,Chicken intestine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007095465.1_ASM709546v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus mulieris,NCBI,RefSeq,GCF_007095465.1,human urine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436695.1_ASM143669v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus taiwanensis,NCBI,RefSeq,GCF_001436695.1,Silage cattle feed,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016647595.1_ASM1664759v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus ultunensis,NCBI,RefSeq,GCF_016647595.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005886075.1_ASM588607v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lactobacillus,Lactobacillus paragasseri,NCBI,RefSeq,GCF_005886075.1,Human,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
PasolliE_2019__Y001__bin.6,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus lactis,Pasolli et al. 2020,MAG,NA,yogurt,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0148-001_Lactococcus_lactis_subsp._cremoris_LMG6897,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus cremoris,Whon et al. 2021,draft,NA,cheese,dairy,Netherlands,Netherlands,prokaryote,MiFoDB_beta_v3_prok
Escobar-ZepedaA_2016__SRR2081070__bin.27,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus petauri,Pasolli et al. 2020,MAG,NA,Cotija cheese,dairy,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
GCF_002310475.1_ASM231047v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus raffinolactis,NCBI,RefSeq,GCF_002310475.1,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_006770265.1_ASM677026v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus carnosus,NCBI,RefSeq,GCF_006770265.1,meat,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_013449735.1_ASM1344973v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus laudensis,NCBI,RefSeq,GCF_013449735.1,raw milk,NA,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_016026695.1_ASM1602669v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Lactococcus,Lactococcus garvieae,NCBI,RefSeq,GCF_016026695.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436095.1_ASM143609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus dextrinicus,NCBI,RefSeq,GCF_001436095.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946655.1_ASM394665v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus achengensis,NCBI,RefSeq,GCF_003946655.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946645.1_ASM394664v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus wuchangensis,NCBI,RefSeq,GCF_003946645.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946675.1_ASM394667v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus gannanensis,NCBI,RefSeq,GCF_003946675.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946695.1_ASM394669v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus bayanensis,NCBI,RefSeq,GCF_003946695.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946215.1_ASM394621v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus mulanensis,NCBI,RefSeq,GCF_003946215.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007989025.1_ASM798902v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lapidilactobacillus,Lapidilactobacillus concavus,NCBI,RefSeq,GCF_007989025.1,Walls of a distilled spirit fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900258455.1_LFU-MFPC41A28-assembly-v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus fuchuensis,NCBI,RefSeq,GCF_900258455.1,Vacuum-packaged beef,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0027-003_Lactobacillus_sakei_WiKim0072,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus sakei,Whon et al. 2021,complete,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001436415.1_ASM143641v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus graminis,NCBI,RefSeq,GCF_001436415.1,Grass silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0005-002_Lactobacillus_curvatus_WiKim38,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Latilactobacillus,Latilactobacillus curvatus,Whon et al. 2021,complete,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001518835.1_ASM151883v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Leclercia,Leclercia adecarboxylata,NCBI,RefSeq,GCF_001518835.1,mucus,NA,United States of America,"KT, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_017348915.1_ASM1734891v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Leclercia,Leclercia pneumoniae,NCBI,RefSeq,GCF_017348915.1,sputum,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
EBC_140.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia amnigena,This paper,MAG,NA,Wild Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_031981525.1_ASM3198152v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Lelliottia,Lelliottia nimipressuralis,NCBI,RefSeq,GCF_031981525.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
EBC_084.37,Bacteria,Firmicutes,Bacilli,Bacillales_D,Amphibacillaceae,Lentibacillus,Lentibacillus salicampi,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0109-002_Lentibacillus_jeotgali_GrbiT,Bacteria,Firmicutes,Bacilli,Bacillales_D,Amphibacillaceae,Lentibacillus,Lentibacillus jeotgali,Whon et al. 2021,draft,NA,fermented seafoods,seafood,Unknown,Unknown,prokaryote,MiFoDB_beta_v3_prok
GCF_001436255.1_ASM143625v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus rapi,NCBI,RefSeq,GCF_001436255.1,"Sunki, a Japanese traditional pickle",vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434735.1_ASM143473v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus buchneri,NCBI,RefSeq,GCF_001434735.1,Tomato pulp,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435875.1_ASM143587v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus farraginis,NCBI,RefSeq,GCF_001435875.1,Composting material of distilled shochu residue,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436555.1_ASM143655v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus senioris,NCBI,RefSeq,GCF_001436555.1,Faeces of a healthy 100-year-old Japanese female,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434655.1_ASM143465v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus hilgardii,NCBI,RefSeq,GCF_001434655.1,Wine,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
Imad_L-18.bin.9,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus kefiri,Kothe et al. 2022,MAG,NA,labneh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
GCF_000785105.2_ASM78510v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus curieae,NCBI,RefSeq,GCF_000785105.2,Stinky tofu brine,legumes,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002276885.1_ASM227688v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parakefiri,NCBI,RefSeq,GCF_002276885.1,Kefir grain,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434255.1_ASM143425v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus diolivorans,NCBI,RefSeq,GCF_001434255.1,Maize silage,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014879295.1_ASM1487929v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parabuchneri,NCBI,RefSeq,GCF_014879295.1,Whole organism,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005864225.1_ASM586422v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus parafarraginis,NCBI,RefSeq,GCF_005864225.1,"Sugar refinery, Switzerland",sugar,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_001766745.1_ASM176674v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus sunkii,NCBI,RefSeq,GCF_001766745.1,anaerobic enrichment culture that was inoculated with biogas reactor content,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900411375.1_PRJEB20856_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus raoultii,NCBI,RefSeq,GCF_900411375.1,vaginal sample,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434145.1_ASM143414v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus otakiensis,NCBI,RefSeq,GCF_001434145.1,Non-salted pickle solution used in production of sunki,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434135.1_ASM143413v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Lentilactobacillus,Lentilactobacillus kisonensis,NCBI,RefSeq,GCF_001434135.1,Non-salted pickle solution used in production of sunki,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_017583045.1_ASM1758304v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Leucobacter,Leucobacter tardus,NCBI,RefSeq,GCF_017583045.1,phyllosphere of Solanum tuberosum,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_016758195.1_ASM1675819v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Leucobacter,Leucobacter chromiireducens,NCBI,RefSeq,GCF_016758195.1,C. elegans,NA,Italy,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_024806925.1_ASM2480692v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Leucobacter,Leucobacter aridicollis,NCBI,RefSeq,GCF_024806925.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007954605.1_ASM795460v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc lactis,NCBI,RefSeq,GCF_007954605.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007954525.1_ASM795452v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc carnosum,NCBI,RefSeq,GCF_007954525.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019655995.1_ASM1965599v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc holzapfelii,NCBI,RefSeq,GCF_019655995.1,Ethiopian coffee fermentation,seed,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019656015.1_ASM1965601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc inhae,NCBI,RefSeq,GCF_019656015.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019656055.1_ASM1965605v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc miyukkimchii,NCBI,RefSeq,GCF_019656055.1,Brown algae kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0094-002_Leuconostoc_lactis_WIKIM21,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc lactis_A,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_000092505.1_ASM9250v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc kimchii,NCBI,RefSeq,GCF_000092505.1,Type material of Leuconostoc kimchii,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000196855.1_ASM19685v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc gasicomitatum,NCBI,RefSeq,GCF_000196855.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000298875.1_ASM29887v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc gelidum,NCBI,RefSeq,GCF_000298875.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
WalshAM_2017__ERR1981166__bin.3,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc falkenbergense,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_016127255.1_ASM1612725v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc pseudomesenteroides,NCBI,RefSeq,GCF_016127255.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0067-003_Leuconostoc_mesenteroides_subsp._mesenteroides_CBA3607,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc mesenteroides_B,Whon et al. 2021,NA,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
EBC_105.6,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc citreum,This paper,MAG,NA,Volcano Kimchi Smokeshow,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_086.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc sp.,This paper,MAG,NA,Potato Kimchi,vegetable,United States of America,"Montana, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_019656075.1_ASM1965607v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc palmae,NCBI,RefSeq,GCF_019656075.1,Palm wine,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009913915.1_ASM991391v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc mesenteroides,NCBI,RefSeq,GCF_009913915.1,Gochujang,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019656095.1_ASM1965609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc rapi,NCBI,RefSeq,GCF_019656095.1,Spoiled sous-vide-cooked rutabaga,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900289205.1_Le_suionicum_CECT_8484_Spades_Prokka_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc,Leuconostoc suionicum,NCBI,RefSeq,GCF_900289205.1,chicha,vegetable,Spain,Argentina,prokaryote,MiFoDB_beta_v3_prok
GCF_004354645.1_ASM435464v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Leuconostoc_B,Leuconostoc_B fallax,NCBI,RefSeq,GCF_004354645.1,Type material of Leuconostoc fallax,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946045.1_ASM394604v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus mulengensis,NCBI,RefSeq,GCF_003946045.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_009295845.1_ASM929584v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus zymae,NCBI,RefSeq,GCF_009295845.1,Artisanal wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007115095.1_ASM711509v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus enshiensis,NCBI,RefSeq,GCF_007115095.1,fermented vegetables,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004115745.1_ASM411574v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus suantsaii,NCBI,RefSeq,GCF_004115745.1,"suan-tsai, a traditional Taiwanese fermented mustard green",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003813165.1_ASM381316v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus brevis,NCBI,RefSeq,GCF_003813165.1,Faeces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435525.1_ASM143552v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus koreensis,NCBI,RefSeq,GCF_001435525.1,Cabbage kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000965255.1_ASM96525v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus spicheri,NCBI,RefSeq,GCF_000965255.1,Rice sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003124125.1_ASM312412v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus bambusae,NCBI,RefSeq,GCF_003124125.1,Traditional fermented bamboo shoots,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004745505.1_ASM474550v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus suantsaiihabitans,NCBI,RefSeq,GCF_004745505.1,"suan tsai, fermented vegetables",vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946095.1_ASM394609v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus lindianensis,NCBI,RefSeq,GCF_003946095.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946545.1_ASM394654v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus tangyuanensis,NCBI,RefSeq,GCF_003946545.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
FS47_2017_noduplicates_bin.5,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus sp. 2,Leech et al. 2020,MAG,NA,brussels sprout kimchi,vegetable,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_003946395.1_ASM394639v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus fuyuanensis,NCBI,RefSeq,GCF_003946395.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001434835.1_ASM143483v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus acidifarinae,NCBI,RefSeq,GCF_001434835.1,Artisanal wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946265.1_ASM394626v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus yonginensis,NCBI,RefSeq,GCF_003946265.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946345.1_ASM394634v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus tongjiangensis,NCBI,RefSeq,GCF_003946345.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946335.1_ASM394633v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus fujinensis,NCBI,RefSeq,GCF_003946335.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001434055.1_ASM143405v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus parabrevis,NCBI,RefSeq,GCF_001434055.1,Cheese,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434785.1_ASM143478v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus namurensis,NCBI,RefSeq,GCF_001434785.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS02_2016_noduplicates_bin.7,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus sp. 1,Leech et al. 2020,MAG,NA,carrot kimchi,vegetable,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_003946145.1_ASM394614v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus huananensis,NCBI,RefSeq,GCF_003946145.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003946085.1_ASM394608v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus angrenensis,NCBI,RefSeq,GCF_003946085.1,fermented dairy beverage,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436675.1_ASM143667v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus senmaizukei,NCBI,RefSeq,GCF_001436675.1,"Senmaizuke, a Japanese pickle",vegetable,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_001434395.1_ASM143439v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus hammesii,NCBI,RefSeq,GCF_001434395.1,Wheat sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437125.1_ASM143712v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus paucivorans,NCBI,RefSeq,GCF_001437125.1,Brewery environment,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946245.1_ASM394624v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus cerevisiae,NCBI,RefSeq,GCF_003946245.1,Spoiled beer,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016861655.1_ASM1686165v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Levilactobacillus,Levilactobacillus lanxiensis,NCBI,RefSeq,GCF_016861655.1,pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_001436315.1_ASM143631v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus aviarius,NCBI,RefSeq,GCF_001436315.1,Faeces of chicken,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003864415.1_ASM386441v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus salitolerans,NCBI,RefSeq,GCF_003864415.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_029889745.1_ASM2988974v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus faecis,NCBI,RefSeq,GCF_029889745.1,Swine feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436015.1_ASM143601v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus murinus,NCBI,RefSeq,GCF_001436015.1,Intestine of rat,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435375.1_ASM143537v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus araffinosus,NCBI,RefSeq,GCF_001435375.1,Intestine of chicken,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434455.1_ASM143445v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus hayakitensis,NCBI,RefSeq,GCF_001434455.1,Faeces of thoroughbred horse,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436215.1_ASM143621v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus agilis,NCBI,RefSeq,GCF_001436215.1,Municipal sewage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435955.1_ASM143595v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus salivarius,NCBI,RefSeq,GCF_001435955.1,Saliva,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000317165.1_O1P2RL8_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus saerimneri,NCBI,RefSeq,GCF_000317165.1,Pig faeces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000504525.1_Lactobacillus_equi_DPC_6820_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus equi,NCBI,RefSeq,GCF_000504525.1,Faeces of horses,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900116935.1_Chromosome_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus acidipiscis,NCBI,RefSeq,GCF_900116935.1,Kopanisti cheese,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436475.1_ASM143647v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus ruminis,NCBI,RefSeq,GCF_001436475.1,Bovine rumen,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434405.1_ASM143440v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus apodemi,NCBI,RefSeq,GCF_001434405.1,Faeces of wild Japanese wood mouse,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000423245.1_ASM42324v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus ceti,NCBI,RefSeq,GCF_000423245.1,Lungs of a beaked whale,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007991295.1_ASM799129v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus pobuzihii,NCBI,RefSeq,GCF_007991295.1,Pobuzih (fermented cummingcordia),NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434535.1_ASM143453v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Ligilactobacillus,Ligilactobacillus animalis,NCBI,RefSeq,GCF_001434535.1,Dental plaque of baboon,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003703885.1_ASM370388v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus reuteri,NCBI,RefSeq,GCF_003703885.1,Rat host,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009428965.1_ASM942896v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus pontis,NCBI,RefSeq,GCF_009428965.1,Rye sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000312405.1_ASM31240v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus ingluviei,NCBI,RefSeq,GCF_000312405.1,"Pigeon, crop",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014635905.1_ASM1463590v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus caviae,NCBI,RefSeq,GCF_014635905.1,Type material of Lactobacillus caviae,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_008876665.1_ASM887666v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus frumenti,NCBI,RefSeq,GCF_008876665.1,Rye-bran sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000161935.1_ASM16193v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus coleohominis_A,NCBI,RefSeq,GCF_000161935.1,Vaginal urogenital tract,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_025311495.1_ASM2531149v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus oris,NCBI,RefSeq,GCF_025311495.1,Chicken feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016900115.1_ASM1690011v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus alvi,NCBI,RefSeq,GCF_016900115.1,Chicken gizzard,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435245.1_ASM143524v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus equigenerosi,NCBI,RefSeq,GCF_001435245.1,Faeces of thoroughbred horse,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001293735.1_LgorillaeKZ01T_1.0_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus gorillae,NCBI,RefSeq,GCF_001293735.1,Gorilla feces,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435935.1_ASM143593v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus panis,NCBI,RefSeq,GCF_001435935.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
MilaniC_2019__SRR7587240__bin.10,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus fermentum,Pasolli et al. 2020,MAG,NA,parmesan cheese,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_014898655.1_ASM1489865v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus mucosae,NCBI,RefSeq,GCF_014898655.1,Pig small intestine,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_025311515.1_ASM2531151v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus vaginalis,NCBI,RefSeq,GCF_025311515.1,Vaginal swab,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437055.1_ASM143705v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus secaliphilus,NCBI,RefSeq,GCF_001437055.1,Sourdough,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900240275.1_PRJEB20106_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus timonensis,NCBI,RefSeq,GCF_900240275.1,Human gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435475.1_ASM143547v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus antri,NCBI,RefSeq,GCF_001435475.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434365.1_ASM143436v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Limosilactobacillus,Limosilactobacillus gastricus,NCBI,RefSeq,GCF_001434365.1,"Gastric biopsies, Human stomach mucosa",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019444005.1_ASM1944400v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus nagelii,NCBI,RefSeq,GCF_019444005.1,Partially fermented wine,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS44_2017_noduplicates_bin.2,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus mali_A,Leech et al. 2020,MAG,NA,"water kefir (pear, honey, ginger)",sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_019443985.1_ASM1944398v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus hordei,NCBI,RefSeq,GCF_019443985.1,Malted barley,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436275.1_ASM143627v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus oeni,NCBI,RefSeq,GCF_001436275.1,Bobal wine,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435195.1_ASM143519v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus satsumensis,NCBI,RefSeq,GCF_001435195.1,Shochu mash,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434935.1_ASM143493v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus uvarum,NCBI,RefSeq,GCF_001434935.1,Must of Bobal grape variety,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009184705.1_ASM918470v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus mali,NCBI,RefSeq,GCF_009184705.1,Apple juice from cider press,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436755.1_ASM143675v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus aquaticus,NCBI,RefSeq,GCF_001436755.1,Surface of a eutrophic freshwater pond,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434915.1_ASM143491v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus capillatus,NCBI,RefSeq,GCF_001434915.1,Fermented  brine used for stinky tofu production,legumes,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435395.1_ASM143539v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus vini,NCBI,RefSeq,GCF_001435395.1,Must of grape,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
FS40_2017_noduplicates_bin.4,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus sp.,Leech et al. 2020,MAG,NA,kombucha,sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_001436705.1_ASM143670v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus sucicola,NCBI,RefSeq,GCF_001436705.1,Sap of an Oak tree,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436735.1_ASM143673v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus cacaonum,NCBI,RefSeq,GCF_001436735.1,Cocoa bean heap fermentation,seed,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_001435235.1_ASM143523v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Liquorilactobacillus,Liquorilactobacillus ghanensis,NCBI,RefSeq,GCF_001435235.1,Cocoa fermentation,seed,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0133-001_Listeria_monocytogenes_N11-2542,Bacteria,Firmicutes,Bacilli,Lactobacillales,Listeriaceae,Listeria,Listeria monocytogenes,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_001434575.1_ASM143457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus bifermentans,NCBI,RefSeq,GCF_001434575.1,Blown cheese,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946385.1_ASM394638v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus zhaoyuanensis,NCBI,RefSeq,GCF_003946385.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_005405165.1_ASM540516v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus binensis,NCBI,RefSeq,GCF_005405165.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002706425.1_ASM270642v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus coryniformis,NCBI,RefSeq,GCF_002706425.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436505.1_ASM143650v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus rennini,NCBI,RefSeq,GCF_001436505.1,Rennin,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946445.1_ASM394644v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus jiayinensis,NCBI,RefSeq,GCF_003946445.1,Chinese traditional pickle,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003950295.1_ASM395029v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus iwatensis,NCBI,RefSeq,GCF_003950295.1,Orchardgrass (Dactylis glomerata L.) silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003946275.1_ASM394627v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Loigolactobacillus,Loigolactobacillus backii,NCBI,RefSeq,GCF_003946275.1,Spoiled lager beer,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900107885.1_IMG-taxon_2597490349_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Pectobacteriaceae,Lonsdalea,Lonsdalea quercina,NCBI,RefSeq,GCF_900107885.1,type strain of Lonsdalea quercina,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524502__bin.6,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Luteimonas,Luteimonas sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Rhone-Alpes, France",prokaryote,MiFoDB_beta_v3_prok
GCF_014643595.1_ASM1464359v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Lysinibacillus,Lysinibacillus alkalisoli,NCBI,RefSeq,GCF_014643595.1,type strain of Lysinibacillus alkalisoli,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016028795.1_ASM1602879v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Macrococcus,Macrococcus caseolyticus,NCBI,RefSeq,GCF_016028795.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002209165.2_ASM220916v2_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus sciuri,NCBI,RefSeq,GCF_002209165.2,clinical isolate,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_016725245.1_ASM1672524v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Mammaliicoccus,Mammaliicoccus vitulinus,NCBI,RefSeq,GCF_016725245.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
Escobar-ZepedaA_2016__SRR2081070__bin.4,Bacteria,Firmicutes,Bacilli,Lactobacillales,Carnobacteriaceae,Marinilactibacillus,Marinilactibacillus piezotolerans_A,Pasolli et al. 2020,MAG,NA,Cotija cheese,dairy,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524486__bin.7,Bacteria,Firmicutes,Bacilli,Lactobacillales,Carnobacteriaceae,Marinilactibacillus,Marinilactibacillus psychrotolerans,Pasolli et al. 2020,MAG,NA,Washed pasteurized cow cheese,dairy,Ireland,"County Cork, Ireland",prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R46__bin.3,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Marinomonadaceae,Marinomonas,Marinomonas sp000017285,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0127-001_Megasphaera_cerevisiae_NSB1,Bacteria,Firmicutes_C,Negativicutes,Veillonellales,Megasphaeraceae,Megasphaera,Megasphaera cerevisiae,Whon et al. 2021,draft,NA,beer,grains,Canada,Canada,prokaryote,MiFoDB_beta_v3_prok
GCF_017347565.1_ASM1734756v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Methylobacteriaceae,Methylobacterium,Methylobacterium indicum,NCBI,RefSeq,GCF_017347565.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_000757795.1_ASM75779v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Methylobacteriaceae,Methylobacterium,Methylobacterium oryzae,NCBI,RefSeq,GCF_000757795.1,plant phyllosphere,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_900100975.1_IMG-taxon_2654588194_annotated_assembly_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Nitrosomonadales,Methylophilaceae,Methylophilus,Methylophilus rhizosphaerae,NCBI,RefSeq,GCF_900100975.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000083545.1_ASM8354v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Hyphomicrobiales,Methylobacteriaceae,Methylorubrum,Methylorubrum extorquens,NCBI,RefSeq,GCF_000083545.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0080-002_Microbacterium_sp._CBA3102,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp000800925,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524505__bin.4,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium gubbeenense,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,United States of America,"Wisconsin, United States of America",prokaryote,MiFoDB_beta_v3_prok
C-R13.bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Microbacterium,Microbacterium sp.,Kothe et al. 2021,MAG,NA,raw serro cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
GCF_003367705.1_ASM336770v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Microbacterium,Microbacterium foliorum,NCBI,RefSeq,GCF_003367705.1,phyllosphere of grasses,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_024362265.1_ASM2436226v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Microbacterium,Microbacterium liquefaciens,NCBI,RefSeq,GCF_024362265.1,poultry farm,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_006539145.1_ASM653914v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Microbacterium,Microbacterium testaceum,NCBI,RefSeq,GCF_006539145.1,Chinese paddy,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_014646015.1_ASM1464601v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Microbacterium,Microbacterium nanhaiense,NCBI,RefSeq,GCF_014646015.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001974985.1_ASM197498v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Microbacterium,Microbacterium aurum,NCBI,RefSeq,GCF_001974985.1,corn steep liquor,vegetable,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_019890915.1_ASM1989091v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Micrococcus,Micrococcus luteus,NCBI,RefSeq,GCF_019890915.1,indoor air,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
FS51_2017_noduplicates_bin.5,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Aquaspirillaceae,Microvirgula,Microvirgula aerodenitrificans,Leech et al. 2020,MAG,NA,ginger slice in 2% brine,vegetable,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_007681265.1_ASM768126v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Mixta,Mixta calida,NCBI,RefSeq,GCF_007681265.1,NA,NA,United States of America,"NC, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_133.12,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Moellerella,Moellerella wisconsensis,This paper,MAG,NA,Queens SF Mukeunji,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_001553955.1_ASM155395v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Moraxella,Moraxella osloensis,NCBI,RefSeq,GCF_001553955.1,human cerebrospinal fluid,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0157-001_Morganella_morganii_FAM24091,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Morganella,Morganella morganii_A,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_902387845.1_UHGG_MGYG-HGUT-02512_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Morganellaceae,Morganella,Morganella morganii,NCBI,RefSeq,GCF_902387845.1,human-associated habitat,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0156-001_Mycetocola_reblochoni_JCM_30549,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Mycetocola_B,Mycetocola_B reblochoni,Whon et al. 2021,draft,NA,cheese,dairy,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_002102175.1_ASM210217v1_genomic,Bacteria,Actinobacteriota,Actinomycetia,Mycobacteriales,Mycobacteriaceae,Mycobacterium,Mycobacterium gastri,NCBI,RefSeq,GCF_002102175.1,gastric lavage,NA,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
Imad_S-8.bin.4,Bacteria,Firmicutes,Bacilli,Mycoplasmatales,Metamycoplasmataceae,Mycoplasmopsis,Mycoplasmopsis agalactiae,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
GCF_000246945.1_ASM24694v2_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Flavobacteriaceae,Myroides,Myroides injenensis,NCBI,RefSeq,GCF_000246945.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900453865.1_50279_H02_genomic,Bacteria,Bacteroidota,Flavobacteriia,Flavobacteriales,Flavobacteriaceae,Myroides,Myroides odoratus,NCBI,RefSeq,GCF_900453865.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0030-002_Natrinema_sp._CBA1119,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Natrialbaceae,Natrinema,Natrinema sp002572525,Whon et al. 2021,draft,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0034-002_Haloterrigena_jeotgali_A29,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Natrialbaceae,Natrinema,Natrinema thermotolerans,Whon et al. 2021,NA,NA,fermented seafoods,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0102-004_Natronomonas_sp._CBA1123,Archaea,Halobacteriota,Halobacteria,Halobacteriales,Haloarculaceae,Natronomonas,Natronomonas sp009741925,Whon et al. 2021,NA,NA,solar salt,salt,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_008330805.1_ASM833080v1_genomic,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Neisseriaceae,Neisseria,Neisseria meningitidis,NCBI,RefSeq,GCF_008330805.1,invasive meningococcal disease,NA,Sweden,Sweden,prokaryote,MiFoDB_beta_v3_prok
GCF_002005465.1_ASM200546v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Acetobacteraceae,Neoasaia,Neoasaia chiangmaiensis,NCBI,RefSeq,GCF_002005465.1,red ginger plant,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_006542335.1_ASM654233v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Acetobacteraceae,Neokomagataea,Neokomagataea tanensis,NCBI,RefSeq,GCF_006542335.1,plant,NA,Thailand,Thailand,prokaryote,MiFoDB_beta_v3_prok
GCF_001598495.1_ASM159849v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Acetobacteraceae,Neokomagataea,Neokomagataea thailandica,NCBI,RefSeq,GCF_001598495.1,NA,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_013267435.1_ASM1326743v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Niallia,Niallia circulans,NCBI,RefSeq,GCF_013267435.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
EBC_110.6,Bacteria,Actinobacteriota,Actinomycetia,Streptosporangiales,Streptosporangiaceae,Nocardiopsis,Nocardiopsis sp.,This paper,MAG,NA,Larger cheese wheel Reiss,dairy,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_001570765.1_ASM157076v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Streptosporangiales,Nocardiopsaceae,Nocardiopsis,Nocardiopsis listeri,NCBI,RefSeq,GCF_001570765.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002906255.1_ASM290625v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Acetobacteraceae,Novacetimonas,Novacetimonas maltaceti,NCBI,RefSeq,GCF_002906255.1,vinegar,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
FS33_2017_noduplicates_bin.1,Bacteria,Proteobacteria,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Novosphingobium,Novosphingobium sp.,Leech et al. 2020,MAG,NA,water kefir ginger,sugar,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_000821065.1_PRJEB5950_assembly_1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Oceanobacillus,Oceanobacillus,Oceanobacillus oncorhynchi,NCBI,RefSeq,GCF_000821065.1,NA,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_000241055.1_ASM24105v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus kitaharae,NCBI,RefSeq,GCF_000241055.1,Type material of Oenococcus kitaharae,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004102045.2_ASM410204v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus sicerae,NCBI,RefSeq,GCF_004102045.2,Apple juice in fermentation (cider),fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_020510245.1_ASM2051024v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Oenococcus,Oenococcus oeni,NCBI,RefSeq,GCF_020510245.1,Wine,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
EBC_089.4,Bacteria,Proteobacteria,Gammaproteobacteria,Burkholderiales,Burkholderiaceae,Paenalcaligenes,Paenalcaligenes sp012518715,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_021654795.1_ASM2165479v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Paenibacillaceae,Paenibacillus,Paenibacillus dendritiformis,NCBI,RefSeq,GCF_021654795.1,honey,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_018333375.1_ASM1833337v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Paenibacillaceae,Paenibacillus,Paenibacillus cookii,NCBI,RefSeq,GCF_018333375.1,honey,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_963311185.1_AASFL403_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Paenibacillaceae,Paenibacillus,Paenibacillus nuruki,NCBI,RefSeq,GCF_963311185.1,Astragalus aitosensis,NA,Bulgaria,Bulgaria,prokaryote,MiFoDB_beta_v3_prok
SEM_44_S61.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea sp.,This paper,MAG,NA,Tempeh 0h,soy,United States of America,"Los Angeles, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
Peaso_bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea agglomerans,Kothe et al. 2023a,MAG,NA,yellow pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
EBC_140.10,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pantoea,Pantoea brenneri,This paper,MAG,NA,Wild Sauerkraut 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_004792415.1_ASM479241v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea vagans,NCBI,RefSeq,GCF_004792415.1,eucalyptus,NA,China,Uganda,prokaryote,MiFoDB_beta_v3_prok
GCF_002858935.1_ASM285893v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea endophytica,NCBI,RefSeq,GCF_002858935.1,root of maize,grains,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_019890955.1_ASM1989095v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea dispersa,NCBI,RefSeq,GCF_019890955.1,drinking water,NA,Laos,Laos,prokaryote,MiFoDB_beta_v3_prok
GCF_020079945.1_ASM2007994v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea eucrina,NCBI,RefSeq,GCF_020079945.1,cucumber rhizosphere,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000233595.1_ASM23359v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea ananatis,NCBI,RefSeq,GCF_000233595.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002095315.1_ASM209531v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea conspicua,NCBI,RefSeq,GCF_002095315.1,NA,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_000969395.1_ASM96939v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea anthophila,NCBI,RefSeq,GCF_000969395.1,hypersaline lake,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_902386985.1_UHGG_MGYG-HGUT-02423_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea septica,NCBI,RefSeq,GCF_902386985.1,human gut microbiome,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_009646115.1_ASM964611v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea eucalypti,NCBI,RefSeq,GCF_009646115.1,eucalypti of Eucalyptus,NA,China,Uruguay,prokaryote,MiFoDB_beta_v3_prok
GCF_016909495.1_ASM1690949v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Pantoea,Pantoea coffeiphila,NCBI,RefSeq,GCF_016909495.1,NA,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_000961515.1_ASM96151v1_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Paraburkholderia,Paraburkholderia fungorum,NCBI,RefSeq,GCF_000961515.1,White-rot fungus Phanerochaete chrysosporium,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_002749495.1_ASM274949v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Paracoccaceae,Paracoccus,Paracoccus yeei,NCBI,RefSeq,GCF_002749495.1,skin swab,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_002287065.1_ASM228706v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Paracoccaceae,Paracoccus,Paracoccus salipaludis,NCBI,RefSeq,GCF_002287065.1,saline alkaline soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_019141545.1_ASM1914154v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodobacterales,Paracoccaceae,Paracoccus,Paracoccus marcusii,NCBI,RefSeq,GCF_019141545.1,pagurus,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_001437205.1_ASM143720v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paralactobacillus,Paralactobacillus selangorensis,NCBI,RefSeq,GCF_001437205.1,Type material of Lactobacillus selangorensis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000876205.1_ASM87620v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus wasatchensis,NCBI,RefSeq,GCF_000876205.1,Aged Cheddar cheese,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_008632615.1_ASM863261v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus nenjiangensis,NCBI,RefSeq,GCF_008632615.1,Fermented vegetables,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434475.1_ASM143447v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus suebicus,NCBI,RefSeq,GCF_001434475.1,Apple mash,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405145.1_ASM540514v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus kaifaensis,NCBI,RefSeq,GCF_005405145.1,Pickle,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436295.1_ASM143629v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus vaccinostercus,NCBI,RefSeq,GCF_001436295.1,Cow dung,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434315.1_ASM143431v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus oligofermentans,NCBI,RefSeq,GCF_001434315.1,Broiler leg,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000829395.1_ASM82939v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Paucilactobacillus,Paucilactobacillus hokkaidonensis,NCBI,RefSeq,GCF_000829395.1,Type material of Lactobacillus hokkaidonensis,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0128-001_Pectinatus_frisingensis_MB139,Bacteria,Firmicutes_C,Negativicutes,Selenomonadales,Selenomonadaceae,Pectinatus,Pectinatus frisingensis,Whon et al. 2021,draft,NA,beer,grains,Singapore,Singapore,prokaryote,MiFoDB_beta_v3_prok
GCF_009873295.1_ASM987329v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Pectobacteriaceae,Pectobacterium,Pectobacterium brasiliense,NCBI,RefSeq,GCF_009873295.1,potato,vegetable,Brazil,Brazil,prokaryote,MiFoDB_beta_v3_prok
GCF_013488025.1_ASM1348802v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Pectobacteriaceae,Pectobacterium,Pectobacterium carotovorum,NCBI,RefSeq,GCF_013488025.1,potato,vegetable,United States of America,"WI, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_001702215.1_ASM170221v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus claussenii,NCBI,RefSeq,GCF_001702215.1,Brewery environment,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000014505.1_ASM1450v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus pentosaceus,NCBI,RefSeq,GCF_000014505.1,Not reported,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007990205.1_ASM799020v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus parvulus,NCBI,RefSeq,GCF_007990205.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437605.1_ASM143760v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus argentinicus,NCBI,RefSeq,GCF_001437605.1,Fermented wheat flour,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437075.1_ASM143707v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus stilesii,NCBI,RefSeq,GCF_001437075.1,Type material of Pediococcus stilesii,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002982135.1_ASM298213v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus inopinatus,NCBI,RefSeq,GCF_002982135.1,Brewery yeast,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001437405.1_ASM143740v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus ethanolidurans,NCBI,RefSeq,GCF_001437405.1,Walls of a distilled-spirit-fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_013127755.1_ASM1312775v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus acidilactici,NCBI,RefSeq,GCF_013127755.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001438655.1_ASM143865v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus cellicola,NCBI,RefSeq,GCF_001438655.1,Distilled-spirit-fermenting cellar,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001611155.1_ASM161115v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Pediococcus,Pediococcus damnosus,NCBI,RefSeq,GCF_001611155.1,Winery environment,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_007833675.1_ASM783367v1_genomic,Bacteria,Bacteroidota,Sphingobacteriia,Sphingobacteriales,Sphingobacteriaceae,Pedobacter,Pedobacter suwonensis,NCBI,RefSeq,GCF_007833675.1,cucumber,vegetable,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_918814575.1_ASM91881457v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella fabaria,NCBI,RefSeq,GCF_918814575.1,"Cocoa bean fermentation, Ghana",seed,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_918814755.1_ASM91881475v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella ghanensis,NCBI,RefSeq,GCF_918814755.1,"Cocoa bean fermentation, Ghana",seed,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_012396505.1_ASM1239650v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Periweissella,Periweissella fabalis,NCBI,RefSeq,GCF_012396505.1,spontaneous cocoa bean fermentations,seed,Brazil,Brazil,prokaryote,MiFoDB_beta_v3_prok
GCF_003019925.1_ASM301992v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pluralibacter,Pluralibacter gergoviae,NCBI,RefSeq,GCF_003019925.1,stool,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_009935415.1_ASM993541v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Priestia,Priestia megaterium,NCBI,RefSeq,GCF_009935415.1,commercial probiotic used for animals,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
QuigleyL_2016__ERR752918__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Propionibacteriales,Propionibacteriaceae,Propionibacterium,Propionibacterium freudenreichii,Pasolli et al. 2020,MAG,NA,pink continental type cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R4__bin.7,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus sp.,Pasolli et al. 2020,MAG,NA,"cheese, hard cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
EBC_089.16,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus mirabilis,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
C-R06.bin.10,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Proteus,Proteus vulgaris,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
C-R06.bin.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Providencia,Providencia rettgeri_A,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
GCF_020381325.1_ASM2038132v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Morganellaceae,Providencia,Providencia vermicola,NCBI,RefSeq,GCF_020381325.1,tissue sample,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000314855.2_ASM31485v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Morganellaceae,Providencia,Providencia burhodogranariea,NCBI,RefSeq,GCF_000314855.2,Drosophila melanogaster,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_029277985.1_ASM2927798v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Morganellaceae,Providencia,Providencia stuartii,NCBI,RefSeq,GCF_029277985.1,human,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_003204135.1_ASM320413v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Morganellaceae,Providencia,Providencia rettgeri,NCBI,RefSeq,GCF_003204135.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_902164725.1_25426_7_251_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Pseudescherichia,Pseudescherichia vulneris,NCBI,RefSeq,GCF_902164725.1,human fecal sample,NA,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524496__bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Pseudoalteromonas,Pseudoalteromonas sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Auvergne, France",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524483__bin.7,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Alteromonadaceae,Pseudoalteromonas,Pseudoalteromonas nigrifaciens,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Burgundy-Champagne, France",prokaryote,MiFoDB_beta_v3_prok
MilaniC_2019__SRR7587240__bin.19,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Microbacteriaceae,Pseudoclavibacter_A,Pseudoclavibacter_A sp008831235,Pasolli et al. 2020,MAG,NA,parmesan cheese,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_001411475.1_ASM141147v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas endophytica,NCBI,RefSeq,GCF_001411475.1,stem cell,NA,Spain,Spain,prokaryote,MiFoDB_beta_v3_prok
GCF_017167965.1_ASM1716796v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas atacamensis,NCBI,RefSeq,GCF_017167965.1,date palm rhizospheric soil,fruit,United Arab Emirates,United Arab Emirates,prokaryote,MiFoDB_beta_v3_prok
GCF_001708485.1_ASM170848v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas lurida,NCBI,RefSeq,GCF_001708485.1,giant miscanthus,NA,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_900111735.1_IMG-taxon_2671180035_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas graminis,NCBI,RefSeq,GCF_900111735.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000145945.2_ASM14594v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas amygdali,NCBI,RefSeq,GCF_000145945.2,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900215245.1_IMG-taxon_2617270901_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas fluorescens,NCBI,RefSeq,GCF_900215245.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_013285305.1_ASM1328530v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas rhodesiae,NCBI,RefSeq,GCF_013285305.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_900560965.1_PPRCHA0_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas protegens,NCBI,RefSeq,GCF_900560965.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_018394375.1_ASM1839437v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas syringae,NCBI,RefSeq,GCF_018394375.1,plant stem,NA,United States of America,"CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_017848315.1_ASM1784831v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas palmensis,NCBI,RefSeq,GCF_017848315.1,tree tobacco,NA,Spain,Spain,prokaryote,MiFoDB_beta_v3_prok
GCF_000006765.1_ASM676v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas aeruginosa,NCBI,RefSeq,GCF_000006765.1,complete genome PathoGenesis Corporation ,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001874645.1_ASM187464v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas frederiksbergensis,NCBI,RefSeq,GCF_001874645.1,glacial stream,NA,India,India,prokaryote,MiFoDB_beta_v3_prok
GCF_014524625.1_ASM1452462v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas chlororaphis,NCBI,RefSeq,GCF_014524625.1,green pepper,vegetable,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_008692035.1_ASM869203v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas marginalis,NCBI,RefSeq,GCF_008692035.1,ginseng,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_031455735.1_ASM3145573v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas hunanensis,NCBI,RefSeq,GCF_031455735.1,NA,NA,United States of America,"NY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_015476275.1_ASM1547627v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas fragi,NCBI,RefSeq,GCF_015476275.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_002028325.1_ASM202832v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas veronii,NCBI,RefSeq,GCF_002028325.1,potato rhizosphere soil,NA,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_000761155.1_ASM76115v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas rhizosphaerae,NCBI,RefSeq,GCF_000761155.1,Rhizospheric soil of grasses,NA,Spain,Spain,prokaryote,MiFoDB_beta_v3_prok
GCF_021560075.1_ASM2156007v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas juntendi,NCBI,RefSeq,GCF_021560075.1,urinary tract infection,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_016599635.1_ASM1659963v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas cannabina,NCBI,RefSeq,GCF_016599635.1,Japanese radish,vegetable,Japan,japan,prokaryote,MiFoDB_beta_v3_prok
GCF_900105485.1_IMG-taxon_2667527397_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas granadensis,NCBI,RefSeq,GCF_900105485.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900105555.1_IMG-taxon_2675903003_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas coleopterorum,NCBI,RefSeq,GCF_900105555.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003033885.1_ASM303388v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas rhizophila,NCBI,RefSeq,GCF_003033885.1,agricultured soil conataminated with pesticides,NA,Tunisia,Tunisia,prokaryote,MiFoDB_beta_v3_prok
GCF_000263675.1_ASM26367v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas lactis,NCBI,RefSeq,GCF_000263675.1,rhizosphere of wheat grown in soil,NA,Neatherlands,Neatherlands,prokaryote,MiFoDB_beta_v3_prok
GCF_021391435.1_ASM2139143v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas sivasensis,NCBI,RefSeq,GCF_021391435.1,Chinese ground orchid,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_900104365.1_IMG-taxon_2639762715_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas extremorientalis,NCBI,RefSeq,GCF_900104365.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_011040435.1_ASM1104043v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas psychrophila,NCBI,RefSeq,GCF_011040435.1,food,NA,Poland,Poland,prokaryote,MiFoDB_beta_v3_prok
GCF_001186195.1_ASM118619v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas fulva,NCBI,RefSeq,GCF_001186195.1,contaminated sludge of fluorine chemical plant in China,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_900102335.1_IMG-taxon_2671180043_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas seleniipraecipitans,NCBI,RefSeq,GCF_900102335.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_009755645.1_ASM975564v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas alkylphenolica,NCBI,RefSeq,GCF_009755645.1,soil,NA,United States of America,"CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_021283545.2_ASM2128354v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas alloputida,NCBI,RefSeq,GCF_021283545.2,blood,NA,Poland,Poland,prokaryote,MiFoDB_beta_v3_prok
GCF_000412675.1_ASM41267v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas putida,NCBI,RefSeq,GCF_000412675.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900497695.1_PWADCCOS864_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas wadenswilerensis,NCBI,RefSeq,GCF_900497695.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001043025.1_MG221_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas helleri,NCBI,RefSeq,GCF_001043025.1,raw milk,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_900105955.1_IMG-taxon_2639763197_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas proteolytica,NCBI,RefSeq,GCF_900105955.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900103345.1_IMG-taxon_2636416017_annotated_assembly_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas azotoformans,NCBI,RefSeq,GCF_900103345.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000934565.1_ASM93456v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas simiae,NCBI,RefSeq,GCF_000934565.1,tomato,fruit,Uzbekistan,Uzbekistan,prokaryote,MiFoDB_beta_v3_prok
GCF_003671975.1_ASM367197v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas monteilii,NCBI,RefSeq,GCF_003671975.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_900184295.1_Chr_1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas viridiflava,NCBI,RefSeq,GCF_900184295.1,diseased cherry tree,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_007665635.1_ASM766563v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas oryzihabitans,NCBI,RefSeq,GCF_007665635.1,NA,NA,United States of America,"NC, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_014268455.2_ASM1426845v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas shahriarae,NCBI,RefSeq,GCF_014268455.2,Wheat rhizosphere,grains,Iran,Iran,prokaryote,MiFoDB_beta_v3_prok
GCF_025643155.1_ASM2564315v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas soli,NCBI,RefSeq,GCF_025643155.1,tomato rhizosphere,fruit,Argentina,Argentina,prokaryote,MiFoDB_beta_v3_prok
GCF_014268495.2_ASM1426849v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas monsensis,NCBI,RefSeq,GCF_014268495.2,maize rhizosphere,vegetable,Belgium,Belgium,prokaryote,MiFoDB_beta_v3_prok
GCF_023955735.1_ASM2395573v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas alliivorans,NCBI,RefSeq,GCF_023955735.1,onion,vegetable,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_015377145.2_2T-2-5-2v4_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas lundensis,NCBI,RefSeq,GCF_015377145.2,meltwater pond,NA,Antarctica,Antarctica,prokaryote,MiFoDB_beta_v3_prok
GCF_000297075.2_Ppseudo_final_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas oleovorans,NCBI,RefSeq,GCF_000297075.2,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900618535.1_TH39_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas bubulae,NCBI,RefSeq,GCF_900618535.1,meat,meat,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_029457395.1_ASM2945739v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas,Pseudomonas nitroreducens,NCBI,RefSeq,GCF_029457395.1,cotton,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
SEM_41_S58.18,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_B,Pseudomonas_B oryzihabitans_B,This paper,MAG,NA,Kimchi brine 48h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0132-001_Pseudomonas_lactis_ITEM_17295,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Pseudomonadaceae,Pseudomonas_E,Pseudomonas_E paracarnis,Whon et al. 2021,draft,NA,cheese,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_2__bin.6,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp.,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R32__bin.3,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter namhaensis,Pasolli et al. 2020,MAG,NA,"cheese, smoked cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R2__bin.9,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter celer,Pasolli et al. 2020,MAG,NA,"cheese, hard cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R46__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp014861395,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524485__bin.2,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Moraxellaceae,Psychrobacter,Psychrobacter sp014861365,Pasolli et al. 2020,MAG,NA,Bloomy raw cow cheese,dairy,France,"Normandy, France",prokaryote,MiFoDB_beta_v3_prok
GCF_904846075.1_ASM90484607v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Psychrobacter,Psychrobacter glacincola,NCBI,RefSeq,GCF_904846075.1,skate gills,NA,Antarctic,Antarctic,prokaryote,MiFoDB_beta_v3_prok
GCF_001606025.1_ASM160602v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Psychrobacter,Psychrobacter alimentarius,NCBI,RefSeq,GCF_001606025.1,rock desert,NA,Antarctica,Antarctica,prokaryote,MiFoDB_beta_v3_prok
GCF_003217155.1_ASM321715v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Psychrobacter,Psychrobacter fozii,NCBI,RefSeq,GCF_003217155.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_904845885.1_ASM90484588v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Moraxellales,Moraxellaceae,Psychrobacter,Psychrobacter aquimaris,NCBI,RefSeq,GCF_904845885.1,sea water,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524502__bin.5,Bacteria,Bacteroidota,Bacteroidia,Flavobacteriales,Flavobacteriaceae,Psychroflexus,Psychroflexus sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Rhone-Alpes, France",prokaryote,MiFoDB_beta_v3_prok
EBC_147.23,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella aceris,This paper,MAG,NA,Curtido 96h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
FS59_2017_noduplicates_bin.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella inusitata,Leech et al. 2020,MAG,NA,carrot sticks,vegetable,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
EBC_030.11,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Rahnella,Rahnella variigena,This paper,MAG,NA,Alimentari Aurora red kraut solid,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_019049655.1_ASM1904965v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rahnella,Rahnella rivi,NCBI,RefSeq,GCF_019049655.1,creek water,NA,United Kingdom,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_000241955.1_ASM24195v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rahnella,Rahnella aquatilis,NCBI,RefSeq,GCF_000241955.1,drinking water,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_019049695.1_ASM1904969v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rahnella,Rahnella perminowiae,NCBI,RefSeq,GCF_019049695.1,symptomatic red onion,vegetable,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_021276285.1_ASM2127628v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rahnella,Rahnella victoriana,NCBI,RefSeq,GCF_021276285.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_019049675.1_ASM1904967v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rahnella,Rahnella bonaserana,NCBI,RefSeq,GCF_019049675.1,onion from storage,vegetable,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_902374465.1_MGYG-HGUT-01384_genomic,Bacteria,Pseudomonadota,Betaproteobacteria,Burkholderiales,Burkholderiaceae,Ralstonia,Ralstonia pickettii,NCBI,RefSeq,GCF_902374465.1,human gut microflora,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_022637595.1_ASM2263759v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Raoultella,Raoultella planticola,NCBI,RefSeq,GCF_022637595.1,grassland soil,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_012029655.1_ASM1202965v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Raoultella,Raoultella terrigena,NCBI,RefSeq,GCF_012029655.1,lakeshore surface sediment,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_001620305.1_ASM162030v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Mycobacteriales,Nocardiaceae,Rhodococcus,Rhodococcus fascians,NCBI,RefSeq,GCF_001620305.1,Chrysanthemum x morifolium,NA,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
GCF_002937115.1_ASM293711v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Rhodopila,Rhodopila globiformis,NCBI,RefSeq,GCF_002937115.1,acidic sulfur spring,NA,United States of America,"Yellowstone National Park, WY, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_023613945.1_ASM2361394v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Rosenbergiella,Rosenbergiella epipactidis,NCBI,RefSeq,GCF_023613945.1,maize,grains,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_008693785.1_ASM869378v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Roseomonas,Roseomonas mucosa,NCBI,RefSeq,GCF_008693785.1,NA,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524491__bin.6,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia sp.,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
MilaniC_2019__SRR7587240__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Rothia,Rothia kristinae,Pasolli et al. 2020,MAG,NA,parmesan cheese,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_004136575.1_ASM413657v1_genomic,Bacteria,Actinomycetota,Actinomycetes,Micrococcales,Micrococcaceae,Rothia,Rothia koreensis,NCBI,RefSeq,GCF_004136575.1,jeotgal,seafood,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_011067265.1_ASM1106726v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Rouxiella,Rouxiella badensis,NCBI,RefSeq,GCF_011067265.1,blueberry,fruit,Mexico,Mexico,prokaryote,MiFoDB_beta_v3_prok
GCF_002884495.1_ASM288449v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Planococcaceae,Rummeliibacillus,Rummeliibacillus pycnus,NCBI,RefSeq,GCF_002884495.1,soil,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000378165.1_ASM37816v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Saccharibacter,Saccharibacter floricola,NCBI,RefSeq,GCF_000378165.1,pollen of Japanese flowers,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_003491405.1_ASM349140v1_genomic,Bacteria,Rhodothermota,Rhodothermia,Rhodothermales,Salinibacteraceae,Salinibacter,Salinibacter ruber,NCBI,RefSeq,GCF_003491405.1,NA,NA,Spain,Spain,prokaryote,MiFoDB_beta_v3_prok
EBC_098.8,Bacteria,Proteobacteria,Gammaproteobacteria,Pseudomonadales,Halomonadaceae,Salinicola,Salinicola salarius_A,This paper,MAG,NA,Cinsoy S-21-V1,soy,United States of America,"Cincinnati, OH, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_003206135.1_ASM320613v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Oceanospirillales,Halomonadaceae,Salinicola,Salinicola salarius,NCBI,RefSeq,GCF_003206135.1,saline water,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
EBC_084.34,Bacteria,Proteobacteria,Gammaproteobacteria,Nevskiales,Salinisphaeraceae,Salinisphaera,Salinisphaera sp.,This paper,MAG,NA,Shoyu,soy,United States of America,"Liberty, TN, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_089.8,Bacteria,Firmicutes,Bacilli,Bacillales_A,Planococcaceae,Savagea,Savagea sp.,This paper,MAG,NA,Dawadawa,soy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
GCF_008694105.1_ASM869410v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus harbinensis,NCBI,RefSeq,GCF_008694105.1,Makgeolli,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435585.1_ASM143558v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus perolens,NCBI,RefSeq,GCF_001435585.1,Orange lemonade,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000469325.1_ASM46932v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Schleiferilactobacillus,Schleiferilactobacillus shenzhenensis,NCBI,RefSeq,GCF_000469325.1,Fermented dairy beverage,dairy,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_008033155.1_ASM803315v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus malefermentans,NCBI,RefSeq,GCF_008033155.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001433995.1_ASM143399v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus kimchicus,NCBI,RefSeq,GCF_001433995.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001702155.1_ASM170215v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus paracollinoides,NCBI,RefSeq,GCF_001702155.1,Beer,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001436595.1_ASM143659v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus similis,NCBI,RefSeq,GCF_001436595.1,Fermented cane molasses at alcohol plants,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002217985.1_ASM221798v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus pentosiphilus,NCBI,RefSeq,GCF_002217985.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002217925.1_ASM221792v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus mixtipabuli,NCBI,RefSeq,GCF_002217925.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001434895.1_ASM143489v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus odoratitofui,NCBI,RefSeq,GCF_001434895.1,Fermented brine used for stinky tofu production,legumes,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001435975.1_ASM143597v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus collinoides,NCBI,RefSeq,GCF_001435975.1,Fermenting apple juice,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002583405.1_ASM258340v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus silagincola,NCBI,RefSeq,GCF_002583405.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004354595.1_ASM435459v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus silagei,NCBI,RefSeq,GCF_004354595.1,Silage,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_000740055.1_ASM74005v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Secundilactobacillus,Secundilactobacillus oryzae,NCBI,RefSeq,GCF_000740055.1,Fermented rice grain,grains,NA,NA,prokaryote,MiFoDB_beta_v3_prok
SEM_47_S64.31,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia,Serratia proteamaculans,This paper,MAG,NA,Viili 48h,dairy,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_145.4,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Serratia,Serratia liquefaciens,This paper,MAG,NA,Red Sauerkraut 21d,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_016026735.1_ASM1602673v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Serratia,Serratia rubidaea,NCBI,RefSeq,GCF_016026735.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_017309605.1_ASM1730960v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Serratia,Serratia ureilytica,NCBI,RefSeq,GCF_017309605.1,soil,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_900638135.1_56433_G01_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Serratia,Serratia quinivorans,NCBI,RefSeq,GCF_900638135.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_900187015.1_50465_F01_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Serratia,Serratia ficaria,NCBI,RefSeq,GCF_900187015.1,fig,fruit,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_002206385.2_ASM220638v2_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Yersiniaceae,Serratia,Serratia odorifera,NCBI,RefSeq,GCF_002206385.2,sputum,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_030662215.1_ASM3066221v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Bacillaceae,Shouchella,Shouchella rhizosphaerae,NCBI,RefSeq,GCF_030662215.1,mangrove soil sediment,NA,India,"Chidambaram, India",prokaryote,MiFoDB_beta_v3_prok
GCF_004168465.1_ASM416846v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Siccibacter,Siccibacter turicensis,NCBI,RefSeq,GCF_004168465.1,kangaroo gut microbiome,NA,Australia,Australia,prokaryote,MiFoDB_beta_v3_prok
GCF_007991775.1_ASM799177v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Azospirillaceae,Skermanella,Skermanella aerolata,NCBI,RefSeq,GCF_007991775.1,air,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524502__bin.4,Bacteria,Bacteroidota,Bacteroidia,Sphingobacteriales,Sphingobacteriaceae,Sphingobacterium,Sphingobacterium sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Rhone-Alpes, France",prokaryote,MiFoDB_beta_v3_prok
GCF_016725865.1_ASM1672586v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingobacteriaceae,Sphingobacterium,Sphingobacterium multivorum,NCBI,RefSeq,GCF_016725865.1,NA,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_000427645.1_ASM42764v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas phyllosphaerae,NCBI,RefSeq,GCF_000427645.1,Acacia caven,NA,Argentina,Argentina,prokaryote,MiFoDB_beta_v3_prok
GCF_014199595.1_ASM1419959v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas yabuuchiae,NCBI,RefSeq,GCF_014199595.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001591005.1_ASM159100v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas sanguinis,NCBI,RefSeq,GCF_001591005.1,NA,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_022760365.1_ASM2276036v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas aquatilis,NCBI,RefSeq,GCF_022760365.1,seawater,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_003046295.1_ASM304629v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Sphingomonadaceae,Sphingomonas,Sphingomonas aerolata,NCBI,RefSeq,GCF_003046295.1,NA,NA,United Kingdom,United Kingdom,prokaryote,MiFoDB_beta_v3_prok
EBC_133.14,Bacteria,Firmicutes,Bacilli,Mycoplasmatales,Mycoplasmataceae,Spiroplasma,Spiroplasma citri,This paper,MAG,NA,Queens SF Mukeunji,vegetable,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
PB_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus warneri,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
L1.2_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus pasteuri,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
EBC_090.4,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus nepalensis,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0166-001_Staphylococcus_xylosus_BC10,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus xylosus,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
C-R07.bin.7,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus saprophyticus,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
EBC_090.9,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus cohnii,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0136-001_Staphylococcus_aureus_18SBCL679,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus aureus,Whon et al. 2021,draft,NA,cheese,dairy,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524491__bin.1,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus equorum_A,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
NP2.2_bin.7,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus simulans,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_16__bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus equorum,Pasolli et al. 2020,MAG,NA,"cheese, blue cheese",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
Vreta_bin.2,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus arlettae,Kothe et al. 2023a,MAG,NA,Swedish vreta pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0167-001_Staphylococcus_succinus_BC15,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus succinus,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
Nixt_bin.1,Bacteria,Firmicutes,Bacilli,Staphylococcales,Staphylococcaceae,Staphylococcus,Staphylococcus epidermidis,Kothe et al. 2023a,MAG,NA,nixtamalized yellow pea miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
GCF_025272815.1_ASM2527281v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Staphylococcus,Staphylococcus capitis,NCBI,RefSeq,GCF_025272815.1,human skin,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
GCF_001922405.1_ASM192240v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Staphylococcus,Staphylococcus condimenti,NCBI,RefSeq,GCF_001922405.1,soft tissue,NA,Norway,Norway,prokaryote,MiFoDB_beta_v3_prok
GCF_001611955.1_ASM161195v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Staphylococcus,Staphylococcus haemolyticus,NCBI,RefSeq,GCF_001611955.1,leaf vegetable,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_020790155.1_ASM2079015v1_genomic,Bacteria,Bacillota,Bacilli,Bacillales,Staphylococcaceae,Staphylococcus,Staphylococcus gallinarum,NCBI,RefSeq,GCF_020790155.1,coconut water,fruit,India,India,prokaryote,MiFoDB_beta_v3_prok
SEM_41_S58.19,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_AJ,This paper,MAG,NA,Kimchi brine 48h,vegetable,United States of America,"Stanford, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
C-R06.bin.7,Bacteria,Proteobacteria,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia_A,Kothe et al. 2021,MAG,NA,raw araxa cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
GCF_034508895.1_ASM3450889v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas geniculata,NCBI,RefSeq,GCF_034508895.1,Asian citrus psyllid,fruit,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_900475405.1_44087_C01_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas maltophilia,NCBI,RefSeq,GCF_900475405.1,cerebrospinal fluid,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004551575.1_ASM455157v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Stenotrophomonas,Stenotrophomonas indicatrix,NCBI,RefSeq,GCF_004551575.1,water plant,NA,Germany,Germany,prokaryote,MiFoDB_beta_v3_prok
WalshAM_2017__ERR1981167__bin.1,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus parasuis,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
C-03.Ssa-BR,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus sp003521145,Kothe et al. 2021,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",prokaryote,MiFoDB_beta_v3_prok
WalshAM_2017__ERR1981175__bin.3,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus sp.,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
WalshAM_2017__ERR1981172__bin.2,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus infantarius,Pasolli et al. 2020,MAG,NA,nunu,dairy,Ghana,Ghana,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0147-001_Streptococcus_thermophilus_C106,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus thermophilus,Whon et al. 2021,draft,NA,cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
Imad_S-8.bin.11,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus parauberis,Kothe et al. 2022,MAG,NA,serdaleh,dairy,Lebanon,Lebanon,prokaryote,MiFoDB_beta_v3_prok
EBC_088.26,Bacteria,Firmicutes,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus macedonicus,This paper,MAG,NA,Burmese natto,soy,Myanmar,Myanmar,prokaryote,MiFoDB_beta_v3_prok
GCF_006385785.1_ASM638578v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Streptococcaceae,Streptococcus,Streptococcus shenyangsis,NCBI,RefSeq,GCF_006385785.1,oropharynx,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R28__bin.1,Bacteria,Actinobacteriota,Actinomycetia,Streptomycetales,Streptomycetaceae,Streptomyces,Streptomyces sp.,Pasolli et al. 2020,MAG,NA,"cheese, tomme",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_007988945.1_ASM798894v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Swaminathania,Swaminathania salitolerans,NCBI,RefSeq,GCF_007988945.1,wild rice,grains,India,"Tamil Nadu, India",prokaryote,MiFoDB_beta_v3_prok
GCF_006542355.1_ASM654235v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Swingsia,Swingsia samuiensis,NCBI,RefSeq,GCF_006542355.1,plant,NA,Thailand,"Samui Island, Thailand",prokaryote,MiFoDB_beta_v3_prok
GCF_000963885.1_ASM96388v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Rhodospirillales,Acetobacteraceae,Tanticharoenia,Tanticharoenia sakaeratensis,NCBI,RefSeq,GCF_000963885.1,NA,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
EBC_035.5,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Tatumella,Tatumella sp.,This paper,MAG,NA,Stagiaire SB cider,fruit,United States of America,"San Francisco, CA, United States of America",prokaryote,MiFoDB_beta_v3_prok
EBC_113.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Enterobacteriaceae,Tatumella,Tatumella ptyseos,This paper,MAG,NA,Mad ange pdc,fruit,United States of America,"Carnation, WA, United States of America",prokaryote,MiFoDB_beta_v3_prok
GCF_000757425.2_Tmorbiroseiassem5_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Tatumella,Tatumella morbirosei,NCBI,RefSeq,GCF_000757425.2,pineapple,fruit,Philippines,Philippines,prokaryote,MiFoDB_beta_v3_prok
GCF_000439375.1_06-3099_v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Tatumella,Tatumella saanichensis,NCBI,RefSeq,GCF_000439375.1,sputum,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0215-003_JABEVO000000000,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus halophilus,Whon et al. 2021,NA,NA,Unknown,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
S3.2_bin.2,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus sp.,Kothe et al. 2023b,MAG,NA,novel miso,legumes,Denmark,"Copenhagen, Denmark",prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524491__bin.2,Bacteria,Firmicutes,Bacilli,Lactobacillales,Enterococcaceae,Tetragenococcus,Tetragenococcus koreensis,Pasolli et al. 2020,MAG,NA,Natural pasteurized cow cheese,dairy,United States of America,"Vermont, United States of America",prokaryote,MiFoDB_beta_v3_prok
QuigleyL_2016__ERR752914__bin.5,Bacteria,Deinococcota,Deinococci,Deinococcales,Thermaceae,Thermus,Thermus parvatiensis,Pasolli et al. 2020,MAG,NA,pink continental type cheese,dairy,Ireland,Ireland,prokaryote,MiFoDB_beta_v3_prok
GCF_020628455.1_ASM2062845v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Vagococcus,Vagococcus fluvialis,NCBI,RefSeq,GCF_020628455.1,marine sponge,NA,France,France,prokaryote,MiFoDB_beta_v3_prok
GCF_023299185.1_ASM2329918v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Vagococcus,Vagococcus lutrae,NCBI,RefSeq,GCF_023299185.1,pet food,NA,Switzerland,Switzerland,prokaryote,MiFoDB_beta_v3_prok
GCF_003987495.1_ASM398749v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Enterococcaceae,Vagococcus,Vagococcus salmoninarum,NCBI,RefSeq,GCF_003987495.1,diseased adult rainbow trout in Oak Spring Hatchery,NA,United States of America,"OR, United States of America",prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0160-001_Vibrio_casei_JB196,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio casei,Whon et al. 2021,draft,NA,cheese,dairy,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R33__bin.1,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio hibernica,Pasolli et al. 2020,MAG,NA,"cheese, brie",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
MacoriG_2019__CS_R42__bin.6,Bacteria,Proteobacteria,Gammaproteobacteria,Enterobacterales,Vibrionaceae,Vibrio,Vibrio toranzoniae,Pasolli et al. 2020,MAG,NA,"cheese, mild",dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_003716875.1_ASM371687v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Vibrionales,Vibrionaceae,Vibrio,Vibrio zhugei,NCBI,RefSeq,GCF_003716875.1,pickling sauce,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_000426765.1_ASM42676v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Vibrionales,Vibrionaceae,Vibrio,Vibrio litoralis,NCBI,RefSeq,GCF_000426765.1,seawater,NA,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_001932615.1_ASM193261v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella thailandensis,NCBI,RefSeq,GCF_001932615.1,"Jogaejeotgal, a Traditional Korean Fermented Seafood",NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_015689215.1_ASM1568921v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella paramesenteroides,NCBI,RefSeq,GCF_015689215.1,Ensiled sorghum,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_012396435.1_ASM1239643v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella hellenica,NCBI,RefSeq,GCF_012396435.1,Dry naturally fermented Greek sausage,meat,Greece,Greece,prokaryote,MiFoDB_beta_v3_prok
GCF_000691805.2_ASM69180v2_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella oryzae,NCBI,RefSeq,GCF_000691805.2,Paddy field,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003353445.1_ASM335344v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella soli,NCBI,RefSeq,GCF_003353445.1,Kimchi,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0086-005_Weissella_koreensis_CBA3615,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella koreensis,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
ODFM-BA-A-0217-003_GCF_025908565.1,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella confusa_B,Whon et al. 2021,NA,NA,kimchi,vegetable,South Korea,South Korea,prokaryote,MiFoDB_beta_v3_prok
GCF_000420365.1_ASM42036v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella halotolerans,NCBI,RefSeq,GCF_000420365.1,Sausage,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004771075.1_ASM477107v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella confusa,NCBI,RefSeq,GCF_004771075.1,Cabbage,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_003862435.1_ASM386243v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella viridescens_A,NCBI,RefSeq,GCF_003862435.1,"Bacterial culture, chile",NA,Chile,Chile,prokaryote,MiFoDB_beta_v3_prok
GCF_001951095.1_ASM195109v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella cibaria,NCBI,RefSeq,GCF_001951095.1,Infant saliva,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_018394055.1_ASM1839405v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella ceti,NCBI,RefSeq,GCF_018394055.1,Type material of Weissella ceti,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_014397255.1_ASM1439725v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella diestrammenae,NCBI,RefSeq,GCF_014397255.1,Cricket gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_005405505.1_ASM540550v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella bombi,NCBI,RefSeq,GCF_005405505.1,Bumblebee gut,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_001438705.1_ASM143870v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella kandleri,NCBI,RefSeq,GCF_001438705.1,Fermented sausages,meat,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_016908785.1_ASM1690878v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella uvarum,NCBI,RefSeq,GCF_016908785.1,Type material of Weissella uvarum,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_008107635.1_ASM810763v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella muntiaci,NCBI,RefSeq,GCF_008107635.1,animal feces,NA,Taiwan,Taiwan,prokaryote,MiFoDB_beta_v3_prok
GCF_001437425.1_ASM143742v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella minor,NCBI,RefSeq,GCF_001437425.1,fermented sausages,meat,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_010306265.1_ASM1030626v1_genomic,Bacteria,Bacillota,Bacilli,Lactobacillales,Lactobacillaceae,Weissella,Weissella sagaensis,NCBI,RefSeq,GCF_010306265.1,traditional yogurt,dairy,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_025211165.1_ASM2521116v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella_A,Weissella_A beninensis,NCBI,RefSeq,GCF_025211165.1,Fermented cassava,vegetable,NA,NA,prokaryote,MiFoDB_beta_v3_prok
GCF_004358325.1_ASM435832v1_genomic,Bacteria,Firmicutes,Bacilli,Lactobacillales,Lactobacillaceae,Weissella_A,Weissella_A cryptocerci,NCBI,RefSeq,GCF_004358325.1,Culture,NA,NA,NA,prokaryote,MiFoDB_beta_v3_prok
PasolliE_2019__DS002__bin.1,Bacteria,Firmicutes,Bacilli,Bacillales_B,Bacillaceae_C,Weizmannia,Weizmannia coagulans_A,Pasolli et al. 2020,MAG,NA,dietary supplement,dairy,Italy,Italy,prokaryote,MiFoDB_beta_v3_prok
GCF_000832905.1_ASM83290v1_genomic,Bacteria,Firmicutes,Bacilli,Bacillales_B,Bacillaceae_C,Weizmannia,Weizmannia coagulans,NCBI,RefSeq,GCF_000832905.1,Type strain of Bacillus coagulans,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_001267535.1_ASM126753v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Enterobacterales,Erwiniaceae,Winslowiella,Winslowiella iniecta,NCBI,RefSeq,GCF_001267535.1,Russian wheat aphid,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
GCF_002006795.1_ASM200679v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Cardiobacteriales,Ignatzschineriaceae,Wohlfahrtiimonas,Wohlfahrtiimonas populi,NCBI,RefSeq,GCF_002006795.1,poplar,NA,China,China,prokaryote,MiFoDB_beta_v3_prok
GCF_002019225.1_ASM201922v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas cissicola,NCBI,RefSeq,GCF_002019225.1,Causonis japonica,NA,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
GCF_017724035.1_ASM1772403v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas euvesicatoria,NCBI,RefSeq,GCF_017724035.1,Medicago sativa,NA,Iran,Iran,prokaryote,MiFoDB_beta_v3_prok
GCF_009649705.1_ASM964970v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas sontii,NCBI,RefSeq,GCF_009649705.1,rice ,grains,United Kingdom,Iran,prokaryote,MiFoDB_beta_v3_prok
GCF_013388375.1_ASM1338837v1_genomic,Bacteria,Pseudomonadota,Gammaproteobacteria,Xanthomonadales,Xanthomonadaceae,Xanthomonas,Xanthomonas campestris,NCBI,RefSeq,GCF_013388375.1,Japanese radish,vegetable,Japan,Japan,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524500__bin.4,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,Yaniella,Yaniella sp.,Pasolli et al. 2020,MAG,NA,Washed pasteurized cow cheese,dairy,Switzerland,"Tufertschwil, Switzerland",prokaryote,MiFoDB_beta_v3_prok
GCF_000498655.1_ASM49865v1_genomic,Bacteria,Pseudomonadota,Alphaproteobacteria,Sphingomonadales,Zymomonadaceae,Zymomonas,Zymomonas mobilis,NCBI,RefSeq,GCF_000498655.1,generic sample from Zymomonas mobilis subsp. mobilis CP4,NA,United States of America,United States of America,prokaryote,MiFoDB_beta_v3_prok
WolfeBE_2014__mgm4524487__bin.3,Bacteria,Actinobacteriota,Actinomycetia,Actinomycetales,Micrococcaceae,,family Micrococcaceae sp.,Pasolli et al. 2020,MAG,NA,Washed raw cow cheese,dairy,France,"Doubs County, France",prokaryote,MiFoDB_beta_v3_prok
EBC_090.1,Archaea,Thermoproteota,Korarchaeia,,,,class Korarchaeia sp.,This paper,MAG,NA,Lacto Elderberries,vegetable,Belgium,"Antwerp, Belgium",prokaryote,MiFoDB_beta_v3_prok
GCF_002926085.2_CanDuoHae_v1.0_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,[Candida] duobushaemulonis,NCBI,RefSeq,GCF_002926085.2,isolated from human blood,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_026027325.1_ASM2602732v1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Mucoraceae,Actinomucor,Actinomucor elegans,NCBI,GenBank,GCA_026027325.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCF_001642055.1_Altal1_genomic,Eukaryota,Ascomycota,Dothideomycetes,Pleosporales,Pleosporaceae,Alternaria,Alternaria alternata,NCBI,RefSeq,GCF_001642055.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000002655.1_ASM265v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus fumigatus,NCBI,RefSeq,GCF_000002655.1,Lungs of patient,NA,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
GCF_001890805.1_Aspgl1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus glaucus,NCBI,RefSeq,GCF_001890805.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_010724455.1_ASM1072445v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus lentulus,NCBI,RefSeq,GCF_010724455.1,Human isolate,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_016861625.1_AkawachiiIFO4308_assembly01_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus luchuensis,NCBI,RefSeq,GCF_016861625.1,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_000011425.1_ASM1142v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus nidulans,NCBI,RefSeq,GCF_000011425.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000002855.3_ASM285v2_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus niger,NCBI,RefSeq,GCF_000002855.3,NA,NA,Netherlands,Netherlands,eukaryote,MiFoDB_beta_v3_euk
GCF_000184455.2_ASM18445v3_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus oryzae,NCBI,RefSeq,GCF_000184455.2,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCA_008274985.1_ASM827498v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus sojae,NCBI,GenBank,GCA_008274985.1,meju,soy,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_000149615.1_ASM14961v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus terreus,NCBI,RefSeq,GCF_000149615.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_013340325.1_ASM1334032v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus tubingensis,NCBI,RefSeq,GCF_013340325.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_003184745.1_Aspuva1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Aspergillus,Aspergillus uvarum,NCBI,RefSeq,GCF_003184745.1,Holotype of Aspergillus uvarum,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_903819665.1_AWRI4233_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium mustum,NCBI,GenBank,GCA_903819665.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCF_000721785.1_Aureobasidium_pullulans_var._pullulans_EXF-150_assembly_version_1.0_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium pullulans,NCBI,RefSeq,GCF_000721785.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_903853725.1_AWRI4620_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium uvarum,NCBI,GenBank,GCA_903853725.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCA_903819635.1_AWRI4619_genomic,Eukaryota,Ascomycota,Dothideomycetes,Dothideales,Saccotheciaceae,Aureobasidium,Aureobasidium vineae,NCBI,GenBank,GCA_903819635.1,grape juice,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCF_000143535.2_ASM14353v4_genomic,Eukaryota,Ascomycota,Leotiomycetes,Helotiales,Sclerotiniaceae,Botrytis,Botrytis cinerea,NCBI,RefSeq,GCF_000143535.2,NA,NA,Netherlands,Netherlands,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0118-001_Brettanomyces_anomalus_YV396,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces anomalus YV396,Whon et al. 2021,draft,NA,beer,grains,Belgium,Belgium,eukaryote,MiFoDB_beta_v3_euk
GCF_011074885.1_ASM1107488v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces bruxellensis,NCBI,RefSeq,GCF_011074885.1,Fruit wine,fruit,Australia,Thailand,eukaryote,MiFoDB_beta_v3_euk
GCA_012295355.1_ASM1229535v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Brettanomyces,Brettanomyces naardenensis,NCBI,GenBank,GCA_012295355.1,lemonde,fruit,Danmark,Denmark,eukaryote,MiFoDB_beta_v3_euk
GCF_000182765.1_ASM18276v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Candida parapsilosis,NCBI,RefSeq,GCF_000182765.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003243815.1_ASM324381v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Spathaspora,Candida sake,NCBI,GenBank,GCA_003243815.1,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_000006335.3_ASM633v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Candida tropicalis,NCBI,RefSeq,GCF_000006335.3,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003709245.3_ASM370924v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Cyberlindnera,Cyberlindnera saturnus,NCBI,GenBank,GCA_003709245.3,Type material of Saccharomyces saturnus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000006445.2_ASM644v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Debaryomyces,Debaryomyces hansenii,NCBI,RefSeq,GCF_000006445.2,Type material of Debaryomyces hansenii,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_023522825.1_DampeI2T2_genomic,Eukaryota,Ascomycota,Sordariomycetes,Diaporthales,Diaporthaceae,Diaporthe,Diaporthe ampelina,NCBI,GenBank,GCA_023522825.1,root,NA,Vietnam,Vietnam,eukaryote,MiFoDB_beta_v3_euk
GCA_005959805.1_ASM595980v1_genomic,Eukaryota,Ascomycota,Dothideomycetes,Myriangiales,Elsinoaceae,Elsinoe,Elsinoe ampelina,NCBI,GenBank,GCA_005959805.1,Vitis vinifera cv. Red Globe,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCF_020744385.1_Fuseq1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Hypocreales,Nectriaceae,Fusarium,Fusarium flagelliforme,NCBI,RefSeq,GCF_020744385.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_013365045.1_LMA-244_clib_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Geotrichum,Geotrichum candidum,NCBI,GenBank,GCA_013365045.1,milk,dairy,Canada,Canada,eukaryote,MiFoDB_beta_v3_euk
GCA_030567255.1_ASM3056725v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora guilliermondii,NCBI,GenBank,GCA_030567255.1,Type material of Hanseniaspora guilliermondii,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_135.6,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora opuntiae,This paper,MAG,NA,Queens SF Lacto Ferm 4% Yellow Peach 8/26/21,vegetable,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_001747045.1_ASM174704v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora osmophila,NCBI,GenBank,GCA_001747045.1,Chardonnay must,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0050-001_Hanseniaspora_uvarum_CBA6001,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora uvarum,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_001664025.1_Hanva1_1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Hanseniaspora,Hanseniaspora valbyensis,NCBI,GenBank,GCA_001664025.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_001661395.1_Hypbu1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Hyphopichia,Hyphopichia burtonii,NCBI,RefSeq,GCF_001661395.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_903064755.1_KABA2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania barnettii,NCBI,RefSeq,GCF_903064755.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_031021025.1_ASM3102102v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania exigua,NCBI,GenBank,GCA_031021025.1,NA,NA,United States of America,"CA, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_092.62,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 1,This paper,MAG,NA,Radish kraut,vegetable,United States of America,"Tennessee, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_100.2,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 2,This paper,MAG,NA,"Volcano Kimchi Gochujang, no sugar, 1.5 year",vegetable,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
FS06_2016_noduplicates_bin.2,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 3,Leech et al. 2020,MAG,NA,Orange,sugar,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
FS09_2016_noduplicates_bin.9,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania saulgeensis 4,Leech et al. 2020,MAG,NA,Ginger beer,sugar,United Kingdom,United Kingdom,eukaryote,MiFoDB_beta_v3_euk
GCA_028408395.1_UA_PF_9_W20_2021_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania servazzii,NCBI,GenBank,GCA_028408395.1,uninoculated grape must,fruit,Australia,Australia,eukaryote,MiFoDB_beta_v3_euk
GCA_003708545.1_ASM370854v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania turicensis,NCBI,GenBank,GCA_003708545.1,Type material of Saccharomyces turicensis,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_003708525.2_ASM370852v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kazachstania,Kazachstania unispora,NCBI,GenBank,GCA_003708525.2,Type material of Saccharomyces unisporus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
EBC_024.4,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Kluyveromyces,Kluyveromyces marxianus,This paper,MAG,NA,Goat Kefir 60h,dairy,United States of America,"California, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_004919595.1_Kodohm_148_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Kodamaea,Kodamaea ohmeri,NCBI,GenBank,GCA_004919595.1,Honeybee midgut,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_029632965.1_ASM2963296v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Komagataella,Komagataella pastoris,NCBI,GenBank,GCA_029632965.1,methanol,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_003707275.3_ASM370727v3_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Kregervanrija,Kregervanrija fluxuum,NCBI,GenBank,GCA_003707275.3,Type material of Debaryomyces fluxuum,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000142805.1_ASM14280v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Lachancea,Lachancea thermotolerans,NCBI,RefSeq,GCF_000142805.1,Type material of Zygosaccharomyces thermotolerans,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000181695.2_ASM18169v2_genomic,Eukaryota,Basidiomycota,Malasseziomycetes,Malasseziales,Malasseziaceae,Malassezia,Malassezia globosa,NCBI,RefSeq,GCF_000181695.2,Culture from type material of Malassezia globosa,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_003290485.1_ASM329048v1_genomic,Eukaryota,Basidiomycota,Malasseziomycetes,Malasseziales,Malasseziaceae,Malassezia,Malassezia restricta,NCBI,RefSeq,GCF_003290485.1,skin environment,NA,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_009932455.1_ASM993245v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Metschnikowiaceae,Metschnikowia,Metschnikowia pulcherrima,NCBI,GenBank,GCA_009932455.1,Fruit,fruit,United Kingdom,"Bath, United Kingdom",eukaryote,MiFoDB_beta_v3_euk
GCA_900106115.1_CBS_141442_assembly_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Metschnikowiaceae,Candida/Metschnikowiaceae,Metschnikowiaceae intermedia,NCBI,GenBank,GCA_900106115.1,NA,NA,Sweden,Sweden,eukaryote,MiFoDB_beta_v3_euk
GCF_000149425.1_ASM14942v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Meyerozyma,Meyerozyma guilliermondii,NCBI,RefSeq,GCF_000149425.1,Type material of Candida guilliermondii,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_002196765.1_ASM219676v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Millerozyma,Millerozyma farinosa,NCBI,GenBank,GCA_002196765.1,nuruk,grains,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_025999795.1_ASM2599979v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Monascus,Monascus purpureus,NCBI,GenBank,GCA_025999795.1,Thai fermented rice,grains,Thailand,Thailand,eukaryote,MiFoDB_beta_v3_euk
GCA_002976275.1_ASM297627v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Monascus,Monascus ruber,NCBI,GenBank,GCA_002976275.1,red yeast rice,grains,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_001599735.1_JCM_2334_assembly_v001_genomic,Eukaryota,Basidiomycota,Tremellomycetes,Filobasidiales,Filobasidiaceae,Naganishia,Naganishia albida,NCBI,GenBank,GCA_001599735.1,Type material of Naganishia albida,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_000002545.3_ASM254v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Nakaseomyces,Nakaseomyces glabratus,NCBI,RefSeq,GCF_000002545.3,Type material of Cryptococcus glabratus,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000182925.2_NC12_genomic,Eukaryota,Ascomycota,Sordariomycetes,Sordariales,Sordariaceae,Neurospora,Neurospora crassa,NCBI,RefSeq,GCF_000182925.2,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_037102815.1_ASM3710281v1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Sordariales,Sordariaceae,Neurospora,Neurospora intermedia,NCBI,GenBank,GCA_037102815.1,endobronchial mass biopsy tissue,NA,Taiwan,Taiwan,eukaryote,MiFoDB_beta_v3_euk
GCA_012922615.1_ASM1292261v1_genomic,Eukaryota,Basidiomycota,Tremellomycetes,Tremellales,Rhynchogastremaceae,Papiliotrema,Papiliotrema laurentii,NCBI,GenBank,GCA_012922615.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCF_028827035.1_ASM2882703v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium chrysogenum,NCBI,RefSeq,GCF_028827035.1,NA,NA,Denmark,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_000769745.1_ASM76974v1_genomic,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium expansum,NCBI,RefSeq,GCF_000769745.1,Rotten apple fruit,fruit,NA,NA,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0144-001_Penicillium_roqueforti_CECT_2905,Eukaryota,Ascomycota,Eurotiomycetes,Eurotiales,Aspergillaceae,Penicillium,Penicillium roqueforti CECT 2905,Whon et al. 2021,draft,NA,cheese,dairy,Chile,Chile,eukaryote,MiFoDB_beta_v3_euk
GCA_029581925.1_ASM2958192v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia fermentans,NCBI,GenBank,GCA_029581925.1,NA,NA,Canada,Canada,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0051-001_Pichia_kluyveri_CBA6002,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia kluyveri CBA6002,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCF_003054445.1_ASM305444v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia kudriavzevii,NCBI,RefSeq,GCF_003054445.1,Type material of Candida krusei,NA,Ireland,Ireland,eukaryote,MiFoDB_beta_v3_euk
GCF_001661235.1_Picme2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia membranifaciens,NCBI,RefSeq,GCF_001661235.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_030168465.1_ASM3016846v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Pichiaceae,Pichia,Pichia terricola,NCBI,GenBank,GCA_030168465.1,Tannat grapes from Uruguayan vineyards,fruit,Uruguay,Uruguay,eukaryote,MiFoDB_beta_v3_euk
GCA_001695595.3_INRA_Pvit_2_genomic,Eukaryota,Oomycota,unk,Peronosporales,Peronosporaceae,Phytophthora,Plasmopara viticola,NCBI,GenBank,GCA_001695595.3,downy mildew,fruit,France,France,eukaryote,MiFoDB_beta_v3_euk
GCF_002708625.1_Rhimi1_1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus microsporus,NCBI,RefSeq,GCF_002708625.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_003325435.1_Razy_CA_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus oligosporus,NCBI,GenBank,GCA_003325435.1,Tempeh,soy,Indonesia,Indonesia,eukaryote,MiFoDB_beta_v3_euk
GCA_024220505.1_ASM2422050v1_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus oryzae,NCBI,GenBank,GCA_024220505.1,tabacco leaf,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_000697035.1_RhiStoB9770-1.0_genomic,Eukaryota,Mucoromycota,Mucoromycetes,Mucorales,Rhizopodaceae,Rhizopus,Rhizopus stolonifer,NCBI,GenBank,GCA_000697035.1,NA,NA,Germany,Germany,eukaryote,MiFoDB_beta_v3_euk
GCA_024748845.1_ASM2474884v1_genomic,Eukaryota,Basidiomycota,Microbotryomycetes,Sporidiobolales,Sporidiobolaceae,Rhodotorula,Rhodotorula mucilaginosa,NCBI,GenBank,GCA_024748845.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0193-001_Saccharomyces_cerevisiae_beer44,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces cerevisiae,Whon et al. 2021,complete,NA,beer,grains,Belgium,Belgium,eukaryote,MiFoDB_beta_v3_euk
FS31_2017_noduplicates_bin.6,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces eubayanus,Leech et al. 2020,MAG,NA,Water kefir hibiscus,sugar,Ireland,Ireland,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0197-001_Saccharomyces_pastorianus_CBS_1513,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Saccharomyces,Saccharomyces pastorianus CBS 1513,Whon et al. 2021,draft,NA,beer,grains,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCF_020623625.1_UHD_SCDLUD_16_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycodaceae,Saccharomycodes,Saccharomycodes ludwigii,NCBI,RefSeq,GCF_020623625.1,NA,NA,Germany,Japan,eukaryote,MiFoDB_beta_v3_euk
C-R03.bin.3,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Debaryomycetaceae,Candida,Scheffersomyces stipitis,This paper,MAG,NA,raw canastra cheese,dairy,Brazil,"Minas Gerais, Brazil",eukaryote,MiFoDB_beta_v3_euk
GCF_000002945.1_ASM294v2_genomic,Eukaryota,Ascomycota,Schizosaccharomycetes,Schizosaccharomycetales,Schizosaccharomycetaceae,Schizosaccharomyces,Schizosaccharomyces pombe,NCBI,RefSeq,GCF_000002945.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_030020325.1_ASM3002032v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella bacillaris,NCBI,GenBank,GCA_030020325.1,NA,NA,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_030568935.1_ASM3056893v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella lactis-condensi,NCBI,GenBank,GCA_030568935.1,type material of Torula lactis-condensi,NA,United States of America,"Madison, WI, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_030674195.1_ASM3067419v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,NA,Starmerella,Starmerella stellata,NCBI,GenBank,GCA_030674195.1,Type material of Saccharomyces stellatus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000243375.1_ASM24337v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Torulaspora,Torulaspora delbrueckii,NCBI,RefSeq,GCF_000243375.1,NA,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
GCA_026184415.1_ASM2618441v1_genomic,Eukaryota,Ascomycota,Sordariomycetes,Hypocreales,NA,Trichothecium,Trichothecium roseum,NCBI,GenBank,GCA_026184415.1,Citrus,fruit,China,China,eukaryote,MiFoDB_beta_v3_euk
GCA_030574495.1_ASM3057449v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Trigonopsidaceae,Trigonopsis,Trigonopsis cantarellii,NCBI,GenBank,GCA_030574495.1,Microbe sample from Trigonopsis cantarellii,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCF_000400465.1_Wallemia_ichthyophaga_version_1.0_genomic,Eukaryota,Basidiomycota,Wallemiomycetes,Wallemiales,Wallemiaceae,Wallemia,Wallemia ichthyophaga,NCBI,RefSeq,GCF_000400465.1,Culture from neotype of Wallemia ichthyophaga,NA,Slovenia,"Ljubljana, Slovenia",eukaryote,MiFoDB_beta_v3_euk
GCA_001600375.1_JCM_5958_assembly_v001_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Trichomonascaceae,Wickerhamiella,Wickerhamiella versatilis,NCBI,GenBank,GCA_001600375.1,NA,NA,Japan,Japan,eukaryote,MiFoDB_beta_v3_euk
GCF_001661255.1_Wican1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Wickerhamomyces,Wickerhamomyces anomalus,NCBI,RefSeq,GCF_001661255.1,NA,NA,United States of America,United States of America,eukaryote,MiFoDB_beta_v3_euk
GCA_030582255.1_ASM3058225v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Phaffomycetaceae,Wickerhamomyces,Wickerhamomyces subpelliculosus,NCBI,GenBank,GCA_030582255.1,Type material of Pichia subpelliculosa,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_900519055.1_YAGA0_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Yarrowia,Yarrowia galli,NCBI,GenBank,GCA_900519055.1,Type material of Candida galli,NA,NA,NA,eukaryote,MiFoDB_beta_v3_euk
ODFM-BA-A-0052-001_Yarrowia_lipolytica_CBA6003,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Dipodascaceae,Yarrowia,Yarrowia lipolytica CBA6003,Whon et al. 2021,draft,NA,kimchi,vegetable,South Korea,South Korea,eukaryote,MiFoDB_beta_v3_euk
GCA_949129075.1_ZBA_7846_DN_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces bailii,NCBI,GenBank,GCA_949129075.1,NA,NA,United Kingdom,Japan,eukaryote,MiFoDB_beta_v3_euk
GCA_003707595.2_ASM370759v2_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces bisporus,NCBI,GenBank,GCA_003707595.2,Type material of Zygosaccharomyces bisporus,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_030580515.1_ASM3058051v1_genomic,Eukaryota,Ascomycota,Saccharomycetes,Saccharomycetales,Saccharomycetaceae,Zygosaccharomyces,Zygosaccharomyces mellis,NCBI,GenBank,GCA_030580515.1,Microbe sample from Zygosaccharomyces mellis,NA,United States of America,"Wisconsin, United States of America",eukaryote,MiFoDB_beta_v3_euk
GCA_001704415.2_ARS1.2_genomic,Eukaryota,Chordata,Mammalia,Artiodactyla,Bovidae,Capra,CapraÊhircus,NCBI,GenBank,GCA_001704415.2,Goat,Goat,UnitedÊStatesÊofÊAmerica,VirginiaÊStateÊUniversity,substrate,MiFoDB_beta_v1_sub
GCA_002263795.3_ARS-UCD1.3_genomic,Eukaryota,Chordata,Mammalia,Artiodactyla,Bovidae,Bos,BosÊtaurus,NCBI,GenBank,GCA_002263795.3,Cow,Cow,UnitedÊStatesÊofÊAmerica,"Nebraska,ÊUnitedÊStatesÊofÊAmerica",substrate,MiFoDB_beta_v1_sub
GCF_000003745.3_12X_genomic,Eukaryota,Streptophyta,Magnoliopsida,Vitales,Vitaceae,Vitis,VitisÊvinifera,NCBI,GenBank,GCA_000003745.2,Grapes,Grapes,NA,Europe,substrate,MiFoDB_beta_v1_sub
GCF_000004515.6_Glycine_max_v4.0_genomic,Eukaryota,Streptophyta,Magnoliopsida,Fabales,Fabaceae,Glycine,GlycineÊmax,NCBI,GenBank,GCA_000004515.5,Soy,Soy,UnitedÊStatesÊofÊAmerica,UnitedÊStatesÊofÊAmerica,substrate,MiFoDB_beta_v1_sub
GCF_000695525.1_BOL_genomic,Eukaryota,Streptophyta,Magnoliopsida,Brassicales,Brassicaceae,Brassica,BrassicaÊoleracea,NCBI,GenBank,GCA_000695525.1,Cabbage,Cabbage,Canada,Canada,substrate,MiFoDB_beta_v1_sub
GCF_001433935.1_IRGSP-1.0_genomic,Eukaryota,Streptophyta,Magnoliopsida,Poales,Poaceae,Oryza,OryzaÊsativa,NCBI,GenBank,GCA_001433935.1,Rice,Rice,Japan,Japan,substrate,MiFoDB_beta_v1_sub
GCF_018294505.1_IWGSC_CS_RefSeq_v2.1_genomic,Eukaryota,Streptophyta,Magnoliopsida,Poales,Poaceae,Triticum,TriticumÊaestivum,NCBI,GenBank,GCA_018294505.1,Wheat,Wheat,UnitedÊStatesÊofÊAmerica,"California,ÊUnitedÊStatesÊofÊAmerica",substrate,MiFoDB_beta_v1_sub