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"person_or_org": { "family_name": "Stachurski", "given_name": "Fr\u00e9d\u00e9ric", "name": "Stachurski, Fr\u00e9d\u00e9ric", "type": "personal" } }, { "person_or_org": { "family_name": "Duhayon", "given_name": "Maxime", "name": "Duhayon, Maxime", "type": "personal" } }, { "person_or_org": { "family_name": "Galon", "given_name": "Cl\u00e9mence", "name": "Galon, Cl\u00e9mence", "type": "personal" } }, { "person_or_org": { "family_name": "Moutailler", "given_name": "Sara", "name": "Moutailler, Sara", "type": "personal" } }, { "person_or_org": { "family_name": "Pollet", "given_name": "Thomas", "name": "Pollet, Thomas", "type": "personal" } } ], "dates": [ { "date": "2024-09", "type": { "id": "accepted", "title": { "de": "Angenommen", "en": "Accepted" } } } ], "description": "

R script were all codes and statistical analyses were done : R_script_Joly-Kukla et al., 2024.Rmd

\n

Raw data (pathogens presence/absence and loads) : charges_rick.xlsx, pathogens_bin_T2022.xlsx

\n

Infection rates and loads calcultations are in the files nammed \"resume_SE...xlsx\", the number of positive samples for a pathogen are presented in \"Count.xlsx\".

\n

Figure 2, Figure 3, Figure S1 and Figure S2 were generated in the file temporal_dynamics_pathogens.xlsx

\n

Figure 1 was generated using the Qgis software (file not provided) and Figure 4 was generetad in the R script.

\n

The file weather_history.csv was used to calculate mean temperature in the file mean_t.xlsx

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