wal-yan/target-methylseq-qc-v2.0.0.zip
wal-yan-target-methylseq-qc-11172a4
.devcontainer
devcontainer.json
1.2 kB
.editorconfig
463 Bytes
.gitattributes
154 Bytes
.github
.dockstore.yml
153 Bytes
CONTRIBUTING.md
6.7 kB
ISSUE_TEMPLATE
bug_report.yml
1.5 kB
feature_request.yml
414 Bytes
PULL_REQUEST_TEMPLATE.md
1.2 kB
workflows
branch.yml
2.3 kB
ci.yml
1.3 kB
clean-up.yml
1.1 kB
fix-linting.yml
1.8 kB
linting.yml
3.3 kB
linting_comment.yml
848 Bytes
.gitignore
78 Bytes
.gitpod.yml
1.1 kB
.nf-core.yml
703 Bytes
.pre-commit-config.yaml
114 Bytes
.prettierignore
126 Bytes
.prettierrc.yml
16 Bytes
CHANGELOG.md
436 Bytes
CITATION.cff
888 Bytes
CITATIONS.md
2.8 kB
LICENSE
1.1 kB
README.md
4.7 kB
assets
adaptivecard.json
2.7 kB
email_template.html
2.6 kB
email_template.txt
792 Bytes
methods_description_template.yml
3.3 kB
multiqc_config.yml
484 Bytes
samplesheet.csv
222 Bytes
schema_input.json
1.4 kB
sendmail_template.txt
1.2 kB
slackreport.json
1.8 kB
test_samplesheet.csv
560 Bytes
bin
check_samplesheet.py
7.9 kB
conf
base.config
2.9 kB
modules.config
1.7 kB
test.config
1.1 kB
docs
README.md
382 Bytes
images
mqc_fastqc_adapter.png
23.5 kB
mqc_fastqc_counts.png
33.9 kB
mqc_fastqc_quality.png
55.8 kB
output.md
8.1 kB
usage.md
14.1 kB
lib
NfcoreTemplate.groovy
16.1 kB
Utils.groovy
2.0 kB
WorkflowMain.groovy
2.2 kB
WorkflowTarget_methylseq_qc.groovy
4.7 kB
nfcore_external_java_deps.jar
2.3 MB
main.nf
2.5 kB
modules
local
samplesheet_check.nf
842 Bytes
nf-core
bedtools
intersect
main.nf
1.3 kB
meta.yml
1.6 kB
custom
dumpsoftwareversions
main.nf
793 Bytes
meta.yml
1.1 kB
templates
dumpsoftwareversions.py
3.4 kB
fastqc
main.nf
1.8 kB
meta.yml
1.5 kB
multiqc
main.nf
1.5 kB
meta.yml
1.7 kB
picard
collecthsmetrics
main.nf
2.8 kB
meta.yml
2.6 kB
collectmultiplemetrics
main.nf
2.5 kB
meta.yml
1.8 kB
createsequencedictionary
main.nf
1.6 kB
meta.yml
1.4 kB
samtools
faidx
main.nf
1.4 kB
meta.yml
1.5 kB
index
main.nf
1.3 kB
meta.yml
1.4 kB
modules.json
2.5 kB
nextflow.config
9.3 kB
nextflow_schema.json
15.5 kB
pipeline_template.yml
162 Bytes
pyproject.toml
359 Bytes
subworkflows
local
input_check.nf
1.2 kB
tower.yml
165 Bytes
workflows
bed_filter.nf
5.4 kB
picard_profiler.nf
7.5 kB