non-silent mutation load per Mb
silent mutation load per Mb
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
one of 21 mutational signatures as defined by NMF clustering
number of copy number segments
fraction of genome altered (fraction of bps belongng to "altered" segements)
number of local max & min among segment means
(AS) sum of number of "arm-level" copy number gains and losses
(AS_prime) minimum number of copy number events required to transition from diploidy to the final copy number state
number of segments with a LOH event
fraction of bps belonging to segments with LOH
number of subchromosomal regions with allelic imbalance extending to the telomere
number of chromosomal breaks between adjacent regions of at least 10Mb
the number of LOH regions of intermediate size (> 15MB but < whole chromosome in length)
HR deficiency score (TAI+LST+HRD+LOH)
Repair Proficiency Score (Pitroda et al.)