Configuration Settings for the Workflow
species | tissue | metadata | genesets | genetype | min_umi_per_cell | max_mt_percent | min_genes_per_cell | min_cell | scr_th | seu_nrmlz_method | seu_scale_factor | seu_n_hvg | seu_n_dim | seu_k_param | seu_cluster_res | harmony | tsne | spr_n_dim | mrk_logfc | mrk_min_pct | mrk_only_pos | mrk_test | mrk_top_n | adt | trajectory | traj_var_gene | traj_top_n | pipe_version |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
hs | skin | sample_based | none | none | 750 | 10 | 250 | 3 | 0 | LogNormalize | 1e+06 | 2000 | 30 | 20 | 0.7 | sample | FALSE | 30 | 0.25 | 0.5 | TRUE | wilcox | 25 | FALSE | none | 1000 | 50 | 1.0.0 |
sample | stage | tissue | site | age | disease | enrichment | location | sex | sample_id |
---|---|---|---|---|---|---|---|---|---|
4820STDY7388991 | adult | Dermis | non_lesion | Unknown | Healthy | Fibroblasts | Breast | Female | S1 |
4820STDY7388992 | adult | Dermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S2 |
4820STDY7388993 | adult | Dermis | non_lesion | Unknown | Healthy | Endothelium | Breast | Female | S3 |
4820STDY7388994 | adult | Dermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S4 |
4820STDY7388995 | adult | Epidermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S5 |
4820STDY7388996 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fN_KC | Breast | Female | S6 |
4820STDY7388997 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fP_KC | Breast | Female | S7 |
4820STDY7388998 | adult | Epidermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S8 |
4820STDY7388999 | adult | Dermis | non_lesion | Unknown | Healthy | Fibroblasts | Breast | Female | S9 |
4820STDY7389000 | adult | Dermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S10 |
4820STDY7389001 | adult | Dermis | non_lesion | Unknown | Healthy | Endothelium | Breast | Female | S11 |
4820STDY7389002 | adult | Dermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S12 |
4820STDY7389003 | adult | Epidermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S13 |
4820STDY7389004 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fN_KC | Breast | Female | S14 |
4820STDY7389005 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fP_KC | Breast | Female | S15 |
4820STDY7389006 | adult | Epidermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S16 |
4820STDY7389007 | adult | Dermis | non_lesion | Unknown | Healthy | Fibroblasts | Breast | Female | S17 |
4820STDY7389008 | adult | Dermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S18 |
4820STDY7389009 | adult | Dermis | non_lesion | Unknown | Healthy | Endothelium | Breast | Female | S19 |
4820STDY7389010 | adult | Dermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S20 |
4820STDY7389011 | adult | Epidermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S21 |
4820STDY7389012 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fN_KC | Breast | Female | S22 |
4820STDY7389013 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fP_KC | Breast | Female | S23 |
4820STDY7389014 | adult | Epidermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S24 |
SKN8090524 | adult | Epidermis | non_lesion | 62 | Eczema | Live_single_spike | Lower_back | Female | S25 |
SKN8090525 | adult | Epidermis | non_lesion | 62 | Eczema | CD45N | Lower_back | Female | S26 |
SKN8090526 | adult | Dermis | non_lesion | 62 | Eczema | Live_single_spike | Lower_back | Female | S27 |
SKN8090527 | adult | Dermis | non_lesion | 62 | Eczema | CD45N | Lower_back | Female | S28 |
SKN8090528 | adult | Epidermis | lesion | 62 | Eczema | CD45P | Lower_back | Female | S29 |
SKN8090529 | adult | Epidermis | lesion | 62 | Eczema | CD45N | Lower_back | Female | S30 |
SKN8090530 | adult | Dermis | lesion | 62 | Eczema | CD45P | Lower_back | Female | S31 |
SKN8090531 | adult | Dermis | lesion | 62 | Eczema | CD45N | Lower_back | Female | S32 |
SKN8090536 | adult | Dermis | non_lesion | 50 | Eczema | CD45P | Lower_back | Male | S33 |
SKN8090537 | adult | Dermis | non_lesion | 50 | Eczema | CD45N | Lower_back | Male | S34 |
SKN8090538 | adult | Epidermis | non_lesion | 50 | Eczema | CD45P | Lower_back | Male | S35 |
SKN8090539 | adult | Epidermis | non_lesion | 50 | Eczema | CD45N | Lower_back | Male | S36 |
SKN8090540 | adult | Dermis | lesion | 50 | Eczema | CD45P | Lower_back | Male | S37 |
SKN8090541 | adult | Dermis | lesion | 50 | Eczema | CD45N | Lower_back | Male | S38 |
SKN8090542 | adult | Epidermis | lesion | 50 | Eczema | CD45P | Lower_back | Male | S39 |
SKN8090543 | adult | Epidermis | lesion | 50 | Eczema | CD45N | Lower_back | Male | S40 |
SKN8090548 | adult | Dermis | non_lesion | 61 | Eczema | CD45P | Lower_back | Male | S41 |
SKN8090549 | adult | Dermis | non_lesion | 61 | Eczema | CD45N | Lower_back | Male | S42 |
SKN8090550 | adult | Epidermis | non_lesion | 61 | Eczema | CD45P | Lower_back | Male | S43 |
SKN8090551 | adult | Epidermis | non_lesion | 61 | Eczema | CD45N | Lower_back | Male | S44 |
SKN8090552 | adult | Dermis | lesion | 61 | Eczema | CD45P | Lower_back | Male | S45 |
SKN8090553 | adult | Dermis | lesion | 61 | Eczema | CD45N | Lower_back | Male | S46 |
SKN8090554 | adult | Epidermis | lesion | 61 | Eczema | CD45P | Lower_back | Male | S47 |
SKN8090555 | adult | Epidermis | lesion | 61 | Eczema | CD45N | Lower_back | Male | S48 |
SKN8090560 | adult | Epidermis | lesion | 20 | Eczema | Live_single | Lower_back | Male | S49 |
SKN8090561 | adult | Dermis | lesion | 20 | Eczema | Live_single | Lower_back | Male | S50 |
SKN8090562 | adult | Epidermis | non_lesion | 20 | Eczema | Live_single | Lower_back | Male | S51 |
SKN8090563 | adult | Dermis | non_lesion | 20 | Eczema | Live_single | Lower_back | Male | S52 |
SKN8090564 | adult | Epidermis | lesion | 20 | Eczema | Live_single | Lower_back | Male | S53 |
SKN8090565 | adult | Dermis | lesion | 20 | Eczema | Live_single | Lower_back | Male | S54 |
SKN8090566 | adult | Epidermis | non_lesion | 20 | Eczema | Live_single | Lower_back | Male | S55 |
SKN8090567 | adult | Dermis | non_lesion | 20 | Eczema | Live_single | Lower_back | Male | S56 |
SKN8090576 | adult | Dermis | lesion | 37 | Psoriasis | CD45P | Lower_back | Female | S57 |
SKN8090577 | adult | Dermis | lesion | 37 | Psoriasis | CD45N | Lower_back | Female | S58 |
SKN8090578 | adult | Epidermis | lesion | 37 | Psoriasis | CD45P | Lower_back | Female | S59 |
SKN8090579 | adult | Epidermis | lesion | 37 | Psoriasis | CD45N | Lower_back | Female | S60 |
SKN8090580 | adult | Dermis | non_lesion | 37 | Psoriasis | CD45P | Lower_back | Female | S61 |
SKN8090581 | adult | Dermis | non_lesion | 37 | Psoriasis | CD45N | Lower_back | Female | S62 |
SKN8090582 | adult | Epidermis | non_lesion | 37 | Psoriasis | CD45P | Lower_back | Female | S63 |
SKN8090583 | adult | Epidermis | non_lesion | 37 | Psoriasis | CD45N | Lower_back | Female | S64 |
SKN8090588 | adult | Dermis | lesion | 65 | Psoriasis | CD45P | Lower_back | Male | S65 |
SKN8090589 | adult | Dermis | lesion | 65 | Psoriasis | CD45N | Lower_back | Male | S66 |
SKN8090590 | adult | Epidermis | lesion | 65 | Psoriasis | CD45P | Lower_back | Male | S67 |
SKN8090591 | adult | Epidermis | lesion | 65 | Psoriasis | CD45N | Lower_back | Male | S68 |
SKN8090592 | adult | Dermis | non_lesion | 65 | Psoriasis | CD45P | Lower_back | Male | S69 |
SKN8090593 | adult | Dermis | non_lesion | 65 | Psoriasis | CD45N | Lower_back | Male | S70 |
SKN8090594 | adult | Epidermis | non_lesion | 65 | Psoriasis | CD45P | Lower_back | Male | S71 |
SKN8090595 | adult | Epidermis | non_lesion | 65 | Psoriasis | CD45N | Lower_back | Male | S72 |
SKN8090600 | adult | Dermis | non_lesion | 62 | Psoriasis | CD45P | Lower_back | Female | S73 |
SKN8090601 | adult | Dermis | non_lesion | 62 | Psoriasis | CD45N | Lower_back | Female | S74 |
SKN8090602 | adult | Epidermis | non_lesion | 62 | Psoriasis | CD45P | Lower_back | Female | S75 |
SKN8090603 | adult | Epidermis | non_lesion | 62 | Psoriasis | CD45N | Lower_back | Female | S76 |
SKN8090604 | adult | Dermis | lesion | 62 | Psoriasis | CD45P | Lower_back | Female | S77 |
SKN8090605 | adult | Dermis | lesion | 62 | Psoriasis | CD45N | Lower_back | Female | S78 |
SKN8090606 | adult | Epidermis | lesion | 62 | Psoriasis | CD45P | Lower_back | Female | S79 |
SKN8090607 | adult | Epidermis | lesion | 62 | Psoriasis | CD45N | Lower_back | Female | S80 |
SKN8104894 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fN_KC | Breast | Female | S81 |
SKN8104895 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fP_KC | Breast | Female | S82 |
SKN8104896 | adult | Epidermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S83 |
SKN8104897 | adult | Epidermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S84 |
SKN8104899 | adult | Dermis | non_lesion | Unknown | Healthy | Fibroblasts | Breast | Female | S85 |
SKN8104900 | adult | Dermis | non_lesion | Unknown | Healthy | Endothelium | Breast | Female | S86 |
SKN8104901 | adult | Dermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S87 |
SKN8104902 | adult | Dermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S88 |
SKN8105192 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fN_KC | Breast | Female | S89 |
SKN8105193 | adult | Epidermis | non_lesion | Unknown | Healthy | CD49fP_KC | Breast | Female | S90 |
SKN8105194 | adult | Epidermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S91 |
SKN8105195 | adult | Epidermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S92 |
SKN8105197 | adult | Dermis | non_lesion | Unknown | Healthy | Fibroblasts | Breast | Female | S93 |
SKN8105198 | adult | Dermis | non_lesion | Unknown | Healthy | Endothelium | Breast | Female | S94 |
SKN8105199 | adult | Dermis | non_lesion | Unknown | Healthy | APCs | Breast | Female | S95 |
SKN8105200 | adult | Dermis | non_lesion | Unknown | Healthy | Lymphocytes | Breast | Female | S96 |
sample_id | pre_qc_gene | pre_qc_cell | post_qc_gene | post_qc_cell |
---|---|---|---|---|
S1 | 21,214 | 3,525 | 17,443 | 3,173 |
S2 | 19,759 | 5,509 | 16,391 | 5,239 |
S3 | 20,589 | 7,434 | 17,308 | 7,181 |
S4 | 20,334 | 4,637 | 16,761 | 3,767 |
S5 | 18,914 | 3,825 | 15,026 | 2,666 |
S6 | 20,980 | 11,807 | 17,713 | 10,680 |
S7 | 20,826 | 7,820 | 16,922 | 6,297 |
S8 | 20,090 | 5,109 | 16,523 | 4,819 |
S9 | 20,779 | 3,916 | 17,554 | 3,858 |
S10 | 19,785 | 3,125 | 16,507 | 3,103 |
S11 | 20,150 | 4,261 | 16,944 | 4,230 |
S12 | 20,443 | 4,546 | 17,174 | 4,384 |
S13 | 15,826 | 568 | 12,358 | 497 |
S14 | 19,721 | 4,527 | 16,550 | 4,309 |
S15 | 18,686 | 3,115 | 15,391 | 3,000 |
S16 | 19,366 | 4,054 | 16,051 | 3,944 |
S17 | 19,984 | 2,382 | 16,707 | 2,364 |
S18 | 18,976 | 2,459 | 15,722 | 2,448 |
S19 | 18,965 | 2,696 | 15,899 | 2,664 |
S20 | 17,865 | 1,781 | 14,580 | 1,697 |
S21 | 17,865 | 1,780 | 14,553 | 1,579 |
S22 | 17,920 | 1,975 | 14,797 | 1,817 |
S23 | 18,344 | 2,709 | 15,300 | 2,653 |
S24 | 17,755 | 2,197 | 14,591 | 2,151 |
S25 | 17,389 | 4,186 | 14,339 | 4,185 |
S26 | 18,450 | 1,551 | 15,245 | 1,443 |
S27 | 9,303 | 88 | 5,090 | 88 |
S28 | 20,407 | 5,225 | 16,982 | 4,977 |
S29 | 15,424 | 1,202 | 12,511 | 1,201 |
S30 | 19,035 | 1,405 | 15,601 | 1,373 |
S31 | 17,125 | 2,683 | 14,106 | 2,669 |
S32 | 21,501 | 2,457 | 18,018 | 2,290 |
S33 | 10,396 | 256 | 7,081 | 256 |
S34 | 19,651 | 8,467 | 16,909 | 8,326 |
S35 | 19,786 | 7,487 | 16,824 | 7,458 |
S36 | 15,030 | 595 | 11,866 | 591 |
S37 | 16,451 | 2,267 | 13,807 | 2,261 |
S38 | 12,359 | 165 | 9,652 | 164 |
S39 | 19,601 | 8,352 | 16,669 | 8,319 |
S40 | 21,297 | 7,651 | 18,255 | 7,620 |
S41 | 16,221 | 1,622 | 13,422 | 1,606 |
S42 | 19,370 | 7,113 | 16,431 | 6,533 |
S43 | 20,352 | 6,909 | 17,203 | 6,824 |
S44 | 21,202 | 6,114 | 18,178 | 5,875 |
S45 | 20,216 | 8,299 | 17,247 | 8,035 |
S46 | 19,978 | 5,396 | 17,111 | 5,091 |
S47 | 20,005 | 7,451 | 16,886 | 7,331 |
S48 | 23,789 | 7,838 | 20,519 | 7,320 |
S49 | 15,291 | 1,628 | 12,380 | 1,628 |
S50 | 16,621 | 1,581 | 13,445 | 1,572 |
S51 | 11,420 | 284 | 7,679 | 284 |
S52 | 18,666 | 2,140 | 15,339 | 2,121 |
S53 | 20,003 | 3,888 | 17,001 | 3,852 |
S54 | 16,676 | 1,249 | 13,374 | 1,243 |
S55 | 11,033 | 320 | 7,585 | 320 |
S56 | 16,204 | 2,666 | 13,216 | 2,651 |
S57 | 18,506 | 5,397 | 15,545 | 5,376 |
S58 | 22,207 | 7,461 | 18,901 | 7,420 |
S59 | 14,975 | 975 | 11,872 | 972 |
S60 | 19,797 | 5,322 | 16,850 | 5,235 |
S61 | 18,110 | 1,990 | 14,949 | 1,987 |
S62 | 21,947 | 7,664 | 18,776 | 7,642 |
S63 | 14,390 | 1,533 | 11,836 | 1,486 |
S64 | 18,818 | 8,228 | 15,990 | 8,123 |
S65 | 20,103 | 11,587 | 17,146 | 11,521 |
S66 | 23,483 | 9,463 | 20,302 | 9,377 |
S67 | 16,773 | 887 | 13,829 | 841 |
S68 | 20,629 | 6,665 | 17,675 | 6,492 |
S69 | 20,877 | 5,494 | 17,782 | 5,452 |
S70 | 20,300 | 11,009 | 17,241 | 10,999 |
S71 | 14,642 | 691 | 12,013 | 680 |
S72 | 19,482 | 7,131 | 16,556 | 7,094 |
S73 | 16,581 | 1,511 | 13,622 | 1,501 |
S74 | 20,966 | 7,656 | 17,779 | 7,550 |
S75 | 15,544 | 822 | 12,870 | 789 |
S76 | 20,348 | 12,514 | 17,296 | 12,266 |
S77 | 19,515 | 5,392 | 16,379 | 5,344 |
S78 | 22,502 | 9,702 | 19,234 | 9,567 |
S79 | 16,889 | 1,035 | 13,664 | 969 |
S80 | 18,433 | 7,191 | 15,615 | 7,177 |
S81 | 20,565 | 6,292 | 17,320 | 5,530 |
S82 | 18,956 | 5,365 | 15,983 | 5,053 |
S83 | 19,648 | 8,600 | 16,613 | 8,508 |
S84 | 19,551 | 6,450 | 16,430 | 5,584 |
S85 | 21,669 | 6,649 | 18,326 | 6,516 |
S86 | 19,698 | 7,932 | 16,758 | 7,900 |
S87 | 19,523 | 4,950 | 16,391 | 4,575 |
S88 | 18,698 | 4,254 | 15,795 | 4,220 |
S89 | 20,433 | 5,162 | 16,745 | 4,156 |
S90 | 20,180 | 6,070 | 16,798 | 5,408 |
S91 | 19,804 | 5,171 | 16,665 | 5,078 |
S92 | 20,582 | 6,911 | 17,295 | 6,069 |
S93 | 21,509 | 5,412 | 17,848 | 4,927 |
S94 | 20,281 | 8,028 | 17,256 | 7,983 |
S95 | 20,022 | 7,869 | 17,096 | 7,412 |
S96 | 20,600 | 4,866 | 17,382 | 4,677 |
Vales are post-QC.
sample_id | min | 0% | 25% | 50% | 75% | 100% | max |
---|---|---|---|---|---|---|---|
S1 | 1,008 | 1,008 | 4,587 | 7,297 | 10,510 | 43,734 | 43,734 |
S2 | 1,001 | 1,001 | 2,228 | 2,939 | 3,705 | 28,934 | 28,934 |
S3 | 1,004 | 1,004 | 5,381 | 7,338 | 9,553 | 34,584 | 34,584 |
S4 | 1,002 | 1,002 | 4,872 | 7,159 | 9,052 | 27,889 | 27,889 |
S5 | 1,000 | 1,000 | 2,473 | 6,233 | 10,190 | 31,650 | 31,650 |
S6 | 1,005 | 1,005 | 5,610 | 7,960 | 10,599 | 38,428 | 38,428 |
S7 | 1,007 | 1,007 | 5,119 | 7,142 | 9,225 | 52,283 | 52,283 |
S8 | 1,007 | 1,007 | 2,237 | 2,885 | 3,772 | 28,865 | 28,865 |
S9 | 1,001 | 1,001 | 3,688 | 5,972 | 8,762 | 39,803 | 39,803 |
S10 | 1,002 | 1,002 | 2,602 | 3,376 | 4,484 | 33,684 | 33,684 |
S11 | 1,021 | 1,021 | 5,213 | 7,264 | 9,782 | 43,327 | 43,327 |
S12 | 1,002 | 1,002 | 4,442 | 7,428 | 9,830 | 46,737 | 46,737 |
S13 | 1,000 | 1,000 | 5,787 | 10,631 | 15,084 | 29,104 | 29,104 |
S14 | 1,015 | 1,015 | 7,262 | 11,073 | 14,733 | 42,806 | 42,806 |
S15 | 1,003 | 1,003 | 6,361 | 8,555 | 10,594 | 47,848 | 47,848 |
S16 | 1,004 | 1,004 | 2,818 | 3,455 | 4,303 | 38,577 | 38,577 |
S17 | 1,020 | 1,020 | 4,190 | 6,584 | 10,127 | 40,002 | 40,002 |
S18 | 1,010 | 1,010 | 2,232 | 2,759 | 3,521 | 40,226 | 40,226 |
S19 | 1,013 | 1,013 | 5,562 | 7,534 | 9,741 | 29,171 | 29,171 |
S20 | 1,002 | 1,002 | 3,327 | 6,962 | 9,398 | 31,690 | 31,690 |
S21 | 1,013 | 1,013 | 6,590 | 9,866 | 13,897 | 52,224 | 52,224 |
S22 | 1,000 | 1,000 | 5,269 | 8,756 | 12,495 | 43,764 | 43,764 |
S23 | 1,002 | 1,002 | 4,056 | 6,429 | 8,468 | 54,392 | 54,392 |
S24 | 1,002 | 1,002 | 2,463 | 3,084 | 3,826 | 29,264 | 29,264 |
S25 | 999 | 999 | 2,701 | 4,234 | 5,668 | 15,105 | 15,105 |
S26 | 1,016 | 1,016 | 9,018 | 18,893 | 27,705 | 101,400 | 101,400 |
S27 | 962 | 962 | 1,172 | 1,412 | 1,674 | 4,429 | 4,429 |
S28 | 1,001 | 1,001 | 2,529 | 3,613 | 5,109 | 28,534 | 28,534 |
S29 | 1,002 | 1,002 | 1,726 | 2,467 | 4,558 | 11,850 | 11,850 |
S30 | 1,028 | 1,028 | 5,143 | 8,870 | 13,124 | 45,596 | 45,596 |
S31 | 799 | 799 | 1,471 | 2,075 | 3,386 | 15,413 | 15,413 |
S32 | 1,007 | 1,007 | 4,685 | 8,358 | 13,992 | 75,079 | 75,079 |
S33 | 993 | 993 | 1,676 | 2,515 | 3,305 | 6,815 | 6,815 |
S34 | 1,001 | 1,001 | 4,369 | 8,356 | 12,218 | 45,826 | 45,826 |
S35 | 754 | 754 | 2,650 | 3,576 | 5,964 | 32,177 | 32,177 |
S36 | 996 | 996 | 1,082 | 1,333 | 3,750 | 15,572 | 15,572 |
S37 | 1,004 | 1,004 | 2,949 | 5,243 | 7,189 | 21,634 | 21,634 |
S38 | 1,582 | 1,582 | 6,044 | 8,627 | 11,911 | 26,947 | 26,947 |
S39 | 971 | 971 | 2,736 | 3,797 | 6,117 | 27,988 | 27,988 |
S40 | 967 | 967 | 2,969 | 5,032 | 7,366 | 33,325 | 33,325 |
S41 | 1,005 | 1,005 | 2,491 | 4,239 | 8,317 | 29,082 | 29,082 |
S42 | 1,001 | 1,001 | 4,899 | 9,084 | 13,571 | 44,176 | 44,176 |
S43 | 831 | 831 | 3,030 | 4,300 | 7,311 | 39,966 | 39,966 |
S44 | 1,000 | 1,000 | 4,458 | 6,519 | 9,171 | 41,706 | 41,706 |
S45 | 751 | 751 | 3,127 | 5,555 | 12,512 | 46,942 | 46,942 |
S46 | 1,011 | 1,011 | 9,752 | 15,208 | 22,026 | 68,048 | 68,048 |
S47 | 758 | 758 | 2,644 | 3,858 | 7,096 | 41,541 | 41,541 |
S48 | 1,002 | 1,002 | 6,884 | 10,820 | 15,360 | 51,191 | 51,191 |
S49 | 998 | 998 | 1,305 | 1,689 | 2,281 | 9,767 | 9,767 |
S50 | 785 | 785 | 1,554 | 2,148 | 3,132 | 16,031 | 16,031 |
S51 | 986 | 986 | 1,091 | 1,252 | 1,507 | 3,207 | 3,207 |
S52 | 850 | 850 | 3,134 | 4,650 | 6,900 | 33,768 | 33,768 |
S53 | 1,019 | 1,019 | 4,598 | 8,239 | 11,046 | 33,725 | 33,725 |
S54 | 846 | 846 | 1,852 | 2,649 | 3,834 | 14,396 | 14,396 |
S55 | 991 | 991 | 1,104 | 1,264 | 1,521 | 4,247 | 4,247 |
S56 | 1,000 | 1,000 | 1,328 | 1,755 | 2,360 | 11,739 | 11,739 |
S57 | 759 | 759 | 1,837 | 2,434 | 4,228 | 24,475 | 24,475 |
S58 | 1,002 | 1,002 | 3,731 | 5,790 | 8,544 | 40,684 | 40,684 |
S59 | 997 | 997 | 1,336 | 1,758 | 3,128 | 18,930 | 18,930 |
S60 | 1,005 | 1,005 | 5,246 | 10,365 | 17,037 | 56,885 | 56,885 |
S61 | 795 | 795 | 2,266 | 3,126 | 6,656 | 28,129 | 28,129 |
S62 | 1,001 | 1,001 | 3,722 | 5,778 | 8,277 | 30,502 | 30,502 |
S63 | 996 | 996 | 5,430 | 6,531 | 7,646 | 22,373 | 22,373 |
S64 | 1,003 | 1,003 | 6,234 | 8,152 | 10,005 | 40,735 | 40,735 |
S65 | 754 | 754 | 2,311 | 3,189 | 6,144 | 35,677 | 35,677 |
S66 | 1,002 | 1,002 | 4,467 | 7,333 | 11,212 | 84,775 | 84,775 |
S67 | 1,000 | 1,000 | 2,597 | 4,060 | 8,205 | 90,696 | 90,696 |
S68 | 1,011 | 1,011 | 11,220 | 19,506 | 29,734 | 103,777 | 103,777 |
S69 | 755 | 755 | 3,732 | 5,220 | 11,937 | 49,043 | 49,043 |
S70 | 1,000 | 1,000 | 1,555 | 2,117 | 3,050 | 15,460 | 15,460 |
S71 | 1,396 | 1,396 | 10,373 | 12,548 | 15,184 | 31,110 | 31,110 |
S72 | 1,003 | 1,003 | 7,520 | 11,088 | 14,526 | 63,076 | 63,076 |
S73 | 1,002 | 1,002 | 1,676 | 2,439 | 4,527 | 20,924 | 20,924 |
S74 | 1,002 | 1,002 | 2,466 | 3,548 | 5,559 | 25,549 | 25,549 |
S75 | 1,159 | 1,159 | 8,381 | 14,037 | 18,720 | 58,248 | 58,248 |
S76 | 1,004 | 1,004 | 6,180 | 8,640 | 11,517 | 45,466 | 45,466 |
S77 | 1,009 | 1,009 | 2,705 | 3,528 | 5,459 | 37,650 | 37,650 |
S78 | 1,001 | 1,001 | 3,081 | 4,840 | 7,624 | 56,265 | 56,265 |
S79 | 1,000 | 1,000 | 2,639 | 3,826 | 6,113 | 56,647 | 56,647 |
S80 | 1,004 | 1,004 | 2,786 | 4,094 | 5,643 | 18,087 | 18,087 |
S81 | 1,011 | 1,011 | 8,388 | 12,096 | 15,452 | 56,817 | 56,817 |
S82 | 1,007 | 1,007 | 5,698 | 7,780 | 9,927 | 38,023 | 38,023 |
S83 | 1,002 | 1,002 | 2,907 | 3,712 | 4,687 | 50,071 | 50,071 |
S84 | 1,001 | 1,001 | 7,300 | 10,320 | 13,490 | 44,469 | 44,469 |
S85 | 1,003 | 1,003 | 5,428 | 8,643 | 13,146 | 42,937 | 42,937 |
S86 | 994 | 994 | 4,040 | 5,412 | 6,884 | 27,334 | 27,334 |
S87 | 1,006 | 1,006 | 3,674 | 6,277 | 9,144 | 27,742 | 27,742 |
S88 | 1,002 | 1,002 | 2,158 | 2,700 | 3,387 | 25,847 | 25,847 |
S89 | 1,007 | 1,007 | 2,978 | 6,236 | 12,803 | 46,017 | 46,017 |
S90 | 1,000 | 1,000 | 4,590 | 7,806 | 10,922 | 54,701 | 54,701 |
S91 | 1,006 | 1,006 | 3,816 | 4,840 | 5,991 | 77,369 | 77,369 |
S92 | 1,003 | 1,003 | 10,271 | 15,225 | 20,231 | 61,873 | 61,873 |
S93 | 1,003 | 1,003 | 5,560 | 7,918 | 10,870 | 42,313 | 42,313 |
S94 | 1,011 | 1,011 | 6,966 | 8,710 | 10,893 | 41,565 | 41,565 |
S95 | 1,005 | 1,005 | 5,090 | 8,414 | 11,552 | 32,846 | 32,846 |
S96 | 1,008 | 1,008 | 3,986 | 5,019 | 6,145 | 42,404 | 42,404 |
Vales are post-QC.
sample_id | min | 0% | 25% | 50% | 75% | 100% | max |
---|---|---|---|---|---|---|---|
S1 | 460 | 460 | 1,502 | 2,072 | 2,696 | 5,419 | 5,419 |
S2 | 429 | 429 | 868 | 1,046 | 1,241 | 5,376 | 5,376 |
S3 | 485 | 485 | 1,664 | 2,124 | 2,606 | 5,321 | 5,321 |
S4 | 443 | 443 | 1,446 | 1,796 | 2,136 | 4,856 | 4,856 |
S5 | 402 | 402 | 843 | 1,336 | 1,948 | 4,439 | 4,439 |
S6 | 432 | 432 | 1,335 | 1,704 | 2,181 | 5,230 | 5,230 |
S7 | 439 | 439 | 1,342 | 1,624 | 1,943 | 5,322 | 5,322 |
S8 | 401 | 401 | 759 | 962 | 1,241 | 4,658 | 4,658 |
S9 | 415 | 415 | 1,240 | 1,722 | 2,278 | 5,145 | 5,145 |
S10 | 400 | 400 | 896 | 1,073 | 1,330 | 5,225 | 5,225 |
S11 | 480 | 480 | 1,501 | 1,976 | 2,475 | 5,248 | 5,248 |
S12 | 404 | 404 | 1,157 | 1,504 | 1,830 | 5,931 | 5,931 |
S13 | 421 | 421 | 1,206 | 1,734 | 2,305 | 3,615 | 3,615 |
S14 | 442 | 442 | 1,572 | 2,065 | 2,599 | 5,148 | 5,148 |
S15 | 424 | 424 | 1,412 | 1,697 | 2,004 | 5,053 | 5,053 |
S16 | 409 | 409 | 907 | 1,100 | 1,332 | 4,733 | 4,733 |
S17 | 440 | 440 | 1,331 | 1,850 | 2,470 | 5,083 | 5,083 |
S18 | 442 | 442 | 816 | 980 | 1,196 | 5,129 | 5,129 |
S19 | 420 | 420 | 1,530 | 1,978 | 2,523 | 4,766 | 4,766 |
S20 | 405 | 405 | 1,030 | 1,371 | 1,662 | 4,967 | 4,967 |
S21 | 406 | 406 | 1,224 | 1,661 | 2,219 | 4,782 | 4,782 |
S22 | 449 | 449 | 1,320 | 1,792 | 2,239 | 4,884 | 4,884 |
S23 | 407 | 407 | 1,132 | 1,471 | 1,782 | 4,529 | 4,529 |
S24 | 417 | 417 | 798 | 1,023 | 1,250 | 4,224 | 4,224 |
S25 | 405 | 405 | 875 | 1,088 | 1,306 | 2,553 | 2,553 |
S26 | 410 | 410 | 2,282 | 2,831 | 3,303 | 5,538 | 5,538 |
S27 | 388 | 388 | 594 | 658 | 756 | 1,507 | 1,507 |
S28 | 412 | 412 | 1,108 | 1,464 | 1,845 | 4,385 | 4,385 |
S29 | 411 | 411 | 792 | 992 | 1,314 | 2,933 | 2,933 |
S30 | 405 | 405 | 1,591 | 2,100 | 2,624 | 4,469 | 4,469 |
S31 | 389 | 389 | 626 | 823 | 1,071 | 2,884 | 2,884 |
S32 | 449 | 449 | 1,478 | 2,159 | 2,900 | 5,928 | 5,928 |
S33 | 409 | 409 | 569 | 766 | 932 | 1,631 | 1,631 |
S34 | 403 | 403 | 1,152 | 1,636 | 2,069 | 4,745 | 4,745 |
S35 | 304 | 304 | 891 | 1,171 | 1,515 | 4,380 | 4,380 |
S36 | 440 | 440 | 570 | 657 | 1,132 | 3,232 | 3,232 |
S37 | 403 | 403 | 907 | 1,188 | 1,477 | 3,176 | 3,176 |
S38 | 459 | 459 | 1,369 | 1,680 | 2,078 | 3,569 | 3,569 |
S39 | 412 | 412 | 944 | 1,201 | 1,562 | 4,520 | 4,520 |
S40 | 410 | 410 | 1,048 | 1,480 | 1,963 | 4,705 | 4,705 |
S41 | 426 | 426 | 894 | 1,236 | 1,618 | 3,114 | 3,114 |
S42 | 420 | 420 | 1,387 | 1,936 | 2,423 | 4,763 | 4,763 |
S43 | 396 | 396 | 1,045 | 1,370 | 1,860 | 5,571 | 5,571 |
S44 | 430 | 430 | 1,419 | 1,862 | 2,346 | 5,439 | 5,439 |
S45 | 401 | 401 | 1,000 | 1,463 | 2,007 | 4,960 | 4,960 |
S46 | 405 | 405 | 2,148 | 2,676 | 3,236 | 5,656 | 5,656 |
S47 | 401 | 401 | 874 | 1,162 | 1,630 | 5,171 | 5,171 |
S48 | 434 | 434 | 1,972 | 2,619 | 3,315 | 5,986 | 5,986 |
S49 | 411 | 411 | 615 | 724 | 871 | 1,985 | 1,985 |
S50 | 400 | 400 | 676 | 847 | 1,109 | 3,084 | 3,084 |
S51 | 399 | 399 | 526 | 590 | 686 | 1,155 | 1,155 |
S52 | 399 | 399 | 1,209 | 1,605 | 2,098 | 4,429 | 4,429 |
S53 | 477 | 477 | 1,542 | 2,016 | 2,352 | 5,013 | 5,013 |
S54 | 403 | 403 | 784 | 1,033 | 1,338 | 2,934 | 2,934 |
S55 | 400 | 400 | 556 | 618 | 704 | 1,134 | 1,134 |
S56 | 410 | 410 | 624 | 770 | 963 | 2,798 | 2,798 |
S57 | 358 | 358 | 743 | 920 | 1,225 | 4,418 | 4,418 |
S58 | 416 | 416 | 1,271 | 1,726 | 2,289 | 5,073 | 5,073 |
S59 | 399 | 399 | 569 | 764 | 1,004 | 3,050 | 3,050 |
S60 | 406 | 406 | 1,348 | 1,989 | 2,537 | 4,502 | 4,502 |
S61 | 412 | 412 | 960 | 1,199 | 1,683 | 4,314 | 4,314 |
S62 | 424 | 424 | 1,303 | 1,790 | 2,294 | 5,751 | 5,751 |
S63 | 447 | 447 | 1,230 | 1,402 | 1,555 | 3,089 | 3,089 |
S64 | 439 | 439 | 1,413 | 1,661 | 1,928 | 4,744 | 4,744 |
S65 | 324 | 324 | 843 | 1,098 | 1,481 | 4,687 | 4,687 |
S66 | 420 | 420 | 1,429 | 1,983 | 2,651 | 5,819 | 5,819 |
S67 | 429 | 429 | 821 | 1,113 | 1,659 | 5,347 | 5,347 |
S68 | 424 | 424 | 2,121 | 2,920 | 3,500 | 5,995 | 5,995 |
S69 | 366 | 366 | 1,365 | 1,678 | 2,147 | 5,800 | 5,800 |
S70 | 405 | 405 | 674 | 845 | 1,103 | 3,435 | 3,435 |
S71 | 457 | 457 | 1,888 | 2,163 | 2,428 | 3,887 | 3,887 |
S72 | 434 | 434 | 1,850 | 2,208 | 2,555 | 5,314 | 5,314 |
S73 | 425 | 425 | 797 | 1,067 | 1,499 | 3,982 | 3,982 |
S74 | 424 | 424 | 1,030 | 1,385 | 1,828 | 4,593 | 4,593 |
S75 | 469 | 469 | 1,735 | 2,319 | 2,766 | 5,191 | 5,191 |
S76 | 411 | 411 | 1,429 | 1,709 | 2,044 | 4,725 | 4,725 |
S77 | 408 | 408 | 902 | 1,160 | 1,507 | 4,776 | 4,776 |
S78 | 401 | 401 | 1,057 | 1,438 | 1,944 | 5,348 | 5,348 |
S79 | 416 | 416 | 940 | 1,378 | 1,917 | 5,277 | 5,277 |
S80 | 400 | 400 | 896 | 1,171 | 1,419 | 3,085 | 3,085 |
S81 | 426 | 426 | 1,841 | 2,232 | 2,624 | 5,199 | 5,199 |
S82 | 440 | 440 | 1,455 | 1,758 | 2,056 | 4,536 | 4,536 |
S83 | 413 | 413 | 1,099 | 1,372 | 1,650 | 4,771 | 4,771 |
S84 | 435 | 435 | 1,474 | 1,902 | 2,358 | 5,116 | 5,116 |
S85 | 451 | 451 | 1,788 | 2,434 | 3,060 | 5,936 | 5,936 |
S86 | 403 | 403 | 1,501 | 1,884 | 2,253 | 4,664 | 4,664 |
S87 | 409 | 409 | 1,277 | 1,716 | 2,104 | 4,217 | 4,217 |
S88 | 444 | 444 | 995 | 1,161 | 1,366 | 4,959 | 4,959 |
S89 | 411 | 411 | 1,137 | 1,698 | 2,317 | 4,986 | 4,986 |
S90 | 406 | 406 | 1,331 | 1,789 | 2,203 | 5,314 | 5,314 |
S91 | 434 | 434 | 1,427 | 1,714 | 2,000 | 5,229 | 5,229 |
S92 | 409 | 409 | 1,796 | 2,384 | 2,935 | 5,411 | 5,411 |
S93 | 421 | 421 | 1,784 | 2,304 | 2,840 | 5,493 | 5,493 |
S94 | 449 | 449 | 2,263 | 2,674 | 3,068 | 5,949 | 5,949 |
S95 | 414 | 414 | 1,596 | 2,062 | 2,447 | 4,541 | 4,541 |
S96 | 419 | 419 | 1,648 | 1,930 | 2,223 | 5,848 | 5,848 |
Vales are post-QC.
sample_id | min | 0% | 25% | 50% | 75% | 100% | max |
---|---|---|---|---|---|---|---|
S1 | 0.00 | 0.00 | 3.96 | 5.25 | 6.66 | 10.00 | 10.00 |
S2 | 0.00 | 0.00 | 3.18 | 4.63 | 6.15 | 9.98 | 9.98 |
S3 | 0.00 | 0.00 | 2.95 | 4.13 | 5.26 | 9.98 | 9.98 |
S4 | 0.00 | 0.00 | 3.48 | 5.09 | 6.78 | 10.00 | 10.00 |
S5 | 0.03 | 0.03 | 4.33 | 6.08 | 7.70 | 10.00 | 10.00 |
S6 | 0.00 | 0.00 | 3.42 | 4.54 | 5.98 | 10.00 | 10.00 |
S7 | 0.00 | 0.00 | 4.29 | 5.89 | 7.51 | 10.00 | 10.00 |
S8 | 0.00 | 0.00 | 2.42 | 3.69 | 5.15 | 9.96 | 9.96 |
S9 | 0.00 | 0.00 | 1.52 | 2.14 | 3.01 | 9.96 | 9.96 |
S10 | 0.00 | 0.00 | 1.87 | 2.57 | 3.45 | 9.75 | 9.75 |
S11 | 0.00 | 0.00 | 1.28 | 1.84 | 2.43 | 9.89 | 9.89 |
S12 | 0.00 | 0.00 | 1.66 | 2.61 | 3.82 | 9.91 | 9.91 |
S13 | 0.00 | 0.00 | 2.20 | 3.29 | 4.47 | 9.91 | 9.91 |
S14 | 0.00 | 0.00 | 1.55 | 2.24 | 3.12 | 9.94 | 9.94 |
S15 | 0.00 | 0.00 | 2.20 | 3.15 | 4.18 | 9.98 | 9.98 |
S16 | 0.00 | 0.00 | 1.99 | 2.73 | 3.58 | 9.92 | 9.92 |
S17 | 0.00 | 0.00 | 1.42 | 1.95 | 2.65 | 9.78 | 9.78 |
S18 | 0.00 | 0.00 | 1.75 | 2.44 | 3.33 | 9.74 | 9.74 |
S19 | 0.00 | 0.00 | 1.07 | 1.48 | 1.98 | 9.49 | 9.49 |
S20 | 0.00 | 0.00 | 1.51 | 2.21 | 3.23 | 9.96 | 9.96 |
S21 | 0.00 | 0.00 | 1.73 | 2.61 | 3.61 | 9.96 | 9.96 |
S22 | 0.00 | 0.00 | 1.29 | 1.98 | 2.97 | 9.96 | 9.96 |
S23 | 0.00 | 0.00 | 1.24 | 2.09 | 3.46 | 9.65 | 9.65 |
S24 | 0.00 | 0.00 | 1.11 | 1.86 | 2.75 | 9.91 | 9.91 |
S25 | 0.00 | 0.00 | 0.80 | 1.15 | 1.74 | 9.60 | 9.60 |
S26 | 0.00 | 0.00 | 1.51 | 2.29 | 3.59 | 9.88 | 9.88 |
S27 | 0.22 | 0.22 | 1.27 | 1.78 | 2.29 | 9.15 | 9.15 |
S28 | 0.00 | 0.00 | 2.63 | 3.63 | 4.71 | 10.00 | 10.00 |
S29 | 0.00 | 0.00 | 1.58 | 2.34 | 3.15 | 8.18 | 8.18 |
S30 | 0.06 | 0.06 | 1.32 | 2.07 | 3.20 | 9.87 | 9.87 |
S31 | 0.00 | 0.00 | 1.40 | 2.24 | 3.12 | 9.03 | 9.03 |
S32 | 0.00 | 0.00 | 1.57 | 2.54 | 3.89 | 9.99 | 9.99 |
S33 | 0.00 | 0.00 | 0.25 | 0.51 | 0.78 | 4.02 | 4.02 |
S34 | 0.00 | 0.00 | 0.47 | 0.98 | 1.74 | 9.99 | 9.99 |
S35 | 0.00 | 0.00 | 0.47 | 1.05 | 1.96 | 9.88 | 9.88 |
S36 | 0.00 | 0.00 | 1.25 | 1.71 | 2.10 | 9.07 | 9.07 |
S37 | 0.00 | 0.00 | 0.25 | 0.48 | 0.93 | 9.98 | 9.98 |
S38 | 0.00 | 0.00 | 0.42 | 0.98 | 1.89 | 7.65 | 7.65 |
S39 | 0.00 | 0.00 | 0.25 | 0.64 | 1.39 | 9.88 | 9.88 |
S40 | 0.00 | 0.00 | 0.38 | 0.79 | 1.54 | 9.89 | 9.89 |
S41 | 0.00 | 0.00 | 1.01 | 2.02 | 3.01 | 9.63 | 9.63 |
S42 | 0.00 | 0.00 | 1.14 | 1.97 | 3.35 | 9.99 | 9.99 |
S43 | 0.00 | 0.00 | 1.31 | 2.18 | 3.31 | 9.87 | 9.87 |
S44 | 0.00 | 0.00 | 1.59 | 2.44 | 3.63 | 9.98 | 9.98 |
S45 | 0.00 | 0.00 | 0.95 | 1.65 | 2.68 | 10.00 | 10.00 |
S46 | 0.00 | 0.00 | 1.37 | 2.12 | 3.38 | 10.00 | 10.00 |
S47 | 0.00 | 0.00 | 1.41 | 2.13 | 3.15 | 9.97 | 9.97 |
S48 | 0.00 | 0.00 | 1.27 | 2.07 | 3.25 | 10.00 | 10.00 |
S49 | 0.00 | 0.00 | 1.18 | 1.55 | 2.01 | 7.08 | 7.08 |
S50 | 0.24 | 0.24 | 1.19 | 1.58 | 2.08 | 9.03 | 9.03 |
S51 | 0.24 | 0.24 | 1.05 | 1.35 | 1.77 | 3.23 | 3.23 |
S52 | 0.00 | 0.00 | 1.48 | 1.94 | 2.50 | 9.95 | 9.95 |
S53 | 0.00 | 0.00 | 1.94 | 2.74 | 3.65 | 9.90 | 9.90 |
S54 | 0.00 | 0.00 | 1.20 | 1.76 | 2.34 | 8.16 | 8.16 |
S55 | 0.19 | 0.19 | 1.12 | 1.50 | 1.93 | 4.84 | 4.84 |
S56 | 0.16 | 0.16 | 1.22 | 1.58 | 1.99 | 9.69 | 9.69 |
S57 | 0.00 | 0.00 | 0.42 | 1.24 | 2.24 | 9.82 | 9.82 |
S58 | 0.00 | 0.00 | 0.48 | 1.42 | 2.72 | 9.98 | 9.98 |
S59 | 0.00 | 0.00 | 0.07 | 0.22 | 0.56 | 7.96 | 7.96 |
S60 | 0.00 | 0.00 | 0.35 | 0.87 | 1.82 | 9.99 | 9.99 |
S61 | 0.00 | 0.00 | 0.20 | 0.52 | 1.55 | 9.64 | 9.64 |
S62 | 0.00 | 0.00 | 0.28 | 0.74 | 1.93 | 9.92 | 9.92 |
S63 | 0.00 | 0.00 | 1.73 | 2.54 | 3.30 | 9.92 | 9.92 |
S64 | 0.00 | 0.00 | 2.12 | 3.17 | 4.41 | 9.92 | 9.92 |
S65 | 0.00 | 0.00 | 0.10 | 0.22 | 0.44 | 9.33 | 9.33 |
S66 | 0.00 | 0.00 | 0.25 | 0.52 | 1.28 | 9.91 | 9.91 |
S67 | 0.00 | 0.00 | 0.44 | 0.91 | 1.74 | 9.96 | 9.96 |
S68 | 0.00 | 0.00 | 0.30 | 0.62 | 1.31 | 9.95 | 9.95 |
S69 | 0.00 | 0.00 | 0.44 | 1.09 | 2.15 | 9.88 | 9.88 |
S70 | 0.00 | 0.00 | 0.46 | 1.21 | 2.23 | 9.88 | 9.88 |
S71 | 0.00 | 0.00 | 1.89 | 3.71 | 4.47 | 8.77 | 8.77 |
S72 | 0.00 | 0.00 | 1.00 | 1.95 | 2.94 | 9.85 | 9.85 |
S73 | 0.00 | 0.00 | 1.63 | 2.82 | 4.08 | 9.43 | 9.43 |
S74 | 0.00 | 0.00 | 1.21 | 2.16 | 3.36 | 9.99 | 9.99 |
S75 | 0.00 | 0.00 | 1.66 | 2.27 | 3.05 | 8.86 | 8.86 |
S76 | 0.00 | 0.00 | 1.60 | 2.45 | 3.41 | 9.86 | 9.86 |
S77 | 0.00 | 0.00 | 0.83 | 1.50 | 2.42 | 9.83 | 9.83 |
S78 | 0.00 | 0.00 | 1.10 | 1.85 | 2.88 | 9.99 | 9.99 |
S79 | 0.00 | 0.00 | 0.19 | 0.57 | 1.16 | 9.99 | 9.99 |
S80 | 0.00 | 0.00 | 0.53 | 0.97 | 1.68 | 9.80 | 9.80 |
S81 | 0.00 | 0.00 | 2.71 | 3.80 | 5.04 | 9.98 | 9.98 |
S82 | 0.00 | 0.00 | 2.68 | 3.92 | 5.19 | 9.97 | 9.97 |
S83 | 0.00 | 0.00 | 1.73 | 2.72 | 3.76 | 9.80 | 9.80 |
S84 | 0.00 | 0.00 | 2.66 | 3.80 | 5.07 | 10.00 | 10.00 |
S85 | 0.00 | 0.00 | 1.94 | 2.62 | 3.49 | 9.92 | 9.92 |
S86 | 0.00 | 0.00 | 1.54 | 2.19 | 2.92 | 9.86 | 9.86 |
S87 | 0.00 | 0.00 | 2.08 | 3.21 | 4.61 | 9.98 | 9.98 |
S88 | 0.00 | 0.00 | 2.30 | 3.16 | 4.10 | 9.94 | 9.94 |
S89 | 0.00 | 0.00 | 2.89 | 4.46 | 6.32 | 10.00 | 10.00 |
S90 | 0.00 | 0.00 | 2.47 | 3.92 | 5.63 | 10.00 | 10.00 |
S91 | 0.00 | 0.00 | 0.90 | 2.82 | 4.43 | 9.99 | 9.99 |
S92 | 0.00 | 0.00 | 2.81 | 4.53 | 5.88 | 9.98 | 9.98 |
S93 | 0.00 | 0.00 | 3.77 | 5.01 | 6.37 | 10.00 | 10.00 |
S94 | 0.00 | 0.00 | 2.84 | 3.54 | 4.24 | 9.96 | 9.96 |
S95 | 0.00 | 0.00 | 3.65 | 4.68 | 5.79 | 9.99 | 9.99 |
S96 | 0.00 | 0.00 | 4.11 | 5.15 | 6.30 | 9.98 | 9.98 |
Thresholds, represented by dashed lines, were implemented to filter the data and only retain cells of high quality.
Number of barcodes shared between pairs of samples post-QC.
## [1] "No overlaps among samples' barcodes."
Fraction (%) of barcodes shared between pairs of samples post-QC.
## [1] "No overlaps among samples' barcodes."
diamonds and diamonds refer to before and after QC, respectively.
The error bars represent the standard deviation of the number of UMIs and genes across cells per sample.
min | 0% | 25% | 50% | 75% | 100% | max | |
---|---|---|---|---|---|---|---|
UMI per cell | 751 | 751 | 3,197 | 5,824 | 9,824 | 103,777 | 103,777 |
Gene per cell | 304 | 304 | 1,098 | 1,591 | 2,181 | 5,995 | 5,995 |
Mitochondrial (%) per cell | 0.00 | 0.00 | 1.07 | 2.24 | 3.82 | 10.00 | 10.00 |
Note: Labels may have been removed if they overlap excessively.
Note: QC metrics based on kernel density estimation.
Note: Labels may have been removed if they overlap excessively.
Values at the top of each bar indicate the percentage of cells
This measurement is a proxy to batch effect artifacts. Values adjacent to each point indicate the number of cells.
Top 25 differentially expressed genes ( p_val_adj < 0.05 and pct.1 > 0.5 ) for each of the clusters
Note: Labels may have been removed if they overlap excessively.
Values at the top of each bar indicate the percentage of cells
Publication: no referrence
Data Availability: no referrence
This is the output of sessionInfo()
on the computing
system on which this document was compiled
## R version 4.3.2 (2023-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.6 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## Random number generation:
## RNG: L'Ecuyer-CMRG
## Normal: Inversion
## Sample: Rejection
##
## locale:
## [1] C
##
## time zone: Etc/UTC
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 grid stats graphics grDevices
## [6] utils datasets methods base
##
## other attached packages:
## [1] edgeR_4.0.2 limma_3.58.1
## [3] slingshot_2.10.0 TrajectoryUtils_1.10.0
## [5] SingleCellExperiment_1.24.0 SummarizedExperiment_1.32.0
## [7] Biobase_2.62.0 GenomicRanges_1.54.1
## [9] GenomeInfoDb_1.38.1 IRanges_2.36.0
## [11] S4Vectors_0.40.2 BiocGenerics_0.48.1
## [13] MatrixGenerics_1.14.0 matrixStats_1.1.0
## [15] princurve_2.1.6 Nebulosa_1.12.0
## [17] patchwork_1.1.3 data.table_1.14.10
## [19] ComplexHeatmap_2.18.0 visNetwork_2.1.2
## [21] plotly_4.10.3 data.tree_1.1.0
## [23] DT_0.30 readxl_1.4.3
## [25] gtools_3.9.5 gplots_3.1.3
## [27] gridtext_0.1.5 igraph_1.5.1
## [29] sargent_1.0.1 SignacX_2.2.5
## [31] harmony_1.2.0 Rcpp_1.0.11
## [33] kableExtra_1.3.4 purrr_1.0.2
## [35] reticulate_1.34.0 RColorBrewer_1.1-3
## [37] cowplot_1.1.1 gridExtra_2.3
## [39] pheatmap_1.0.12 ggrepel_0.9.4
## [41] ggplot2_3.4.4 Seurat_5.0.1
## [43] SeuratObject_5.0.1 sp_2.1-2
## [45] dplyr_1.1.4 optparse_1.7.3
##
## loaded via a namespace (and not attached):
## [1] spatstat.sparse_3.0-3 bitops_1.0-7
## [3] httr_1.4.7 webshot_0.5.5
## [5] doParallel_1.0.17 tools_4.3.2
## [7] sctransform_0.4.1 utf8_1.2.4
## [9] R6_2.5.1 mgcv_1.9-0
## [11] lazyeval_0.2.2 uwot_0.1.16
## [13] ggdist_3.3.1 GetoptLong_1.0.5
## [15] withr_2.5.2 progressr_0.14.0
## [17] cli_3.6.1 spatstat.explore_3.2-5
## [19] fastDummies_1.7.3 labeling_0.4.3
## [21] sass_0.4.8 mvtnorm_1.2-4
## [23] spatstat.data_3.0-3 proxy_0.4-27
## [25] ggridges_0.5.4 pbapply_1.7-2
## [27] commonmark_1.9.0 systemfonts_1.0.5
## [29] R.utils_2.12.3 svglite_2.1.2
## [31] parallelly_1.36.0 rstudioapi_0.15.0
## [33] generics_0.1.3 shape_1.4.6
## [35] crosstalk_1.2.1 ica_1.0-3
## [37] spatstat.random_3.2-2 distributional_0.3.2
## [39] Matrix_1.6-4 fansi_1.0.6
## [41] DescTools_0.99.52 abind_1.4-5
## [43] R.methodsS3_1.8.2 lifecycle_1.0.4
## [45] yaml_2.3.7 SparseArray_1.2.2
## [47] Rtsne_0.17 promises_1.2.1
## [49] crayon_1.5.2 miniUI_0.1.1.1
## [51] lattice_0.22-5 pillar_1.9.0
## [53] knitr_1.45 rjson_0.2.21
## [55] boot_1.3-28.1 gld_2.6.6
## [57] future.apply_1.11.0 codetools_0.2-19
## [59] leiden_0.4.3.1 glue_1.6.2
## [61] vctrs_0.6.5 png_0.1-8
## [63] spam_2.10-0 neuralnet_1.44.2
## [65] cellranger_1.1.0 gtable_0.3.4
## [67] cachem_1.0.8 ks_1.14.1
## [69] xfun_0.41 S4Arrays_1.2.0
## [71] mime_0.12 pracma_2.4.4
## [73] survival_3.5-7 pbmcapply_1.5.1
## [75] iterators_1.0.14 statmod_1.5.0
## [77] ellipsis_0.3.2 fitdistrplus_1.1-11
## [79] ROCR_1.0-11 nlme_3.1-164
## [81] RcppAnnoy_0.0.21 bslib_0.6.1
## [83] irlba_2.3.5.1 KernSmooth_2.23-22
## [85] colorspace_2.1-0 Exact_3.2
## [87] tidyselect_1.2.0 compiler_4.3.2
## [89] rvest_1.0.3 expm_0.999-8
## [91] xml2_1.3.6 DelayedArray_0.28.0
## [93] scales_1.3.0 caTools_1.18.2
## [95] lmtest_0.9-40 stringr_1.5.1
## [97] digest_0.6.33 goftest_1.2-3
## [99] presto_1.0.0 spatstat.utils_3.0-4
## [101] rmarkdown_2.25 RhpcBLASctl_0.23-42
## [103] XVector_0.42.0 htmltools_0.5.7
## [105] pkgconfig_2.0.3 highr_0.10
## [107] fastmap_1.1.1 rlang_1.1.2
## [109] GlobalOptions_0.1.2 htmlwidgets_1.6.4
## [111] shiny_1.8.0 jquerylib_0.1.4
## [113] farver_2.1.1 zoo_1.8-12
## [115] jsonlite_1.8.8 mclust_6.0.1
## [117] R.oo_1.25.0 RCurl_1.98-1.13
## [119] magrittr_2.0.3 GenomeInfoDbData_1.2.11
## [121] dotCall64_1.1-1 munsell_0.5.0
## [123] stringi_1.8.2 rootSolve_1.8.2.4
## [125] zlibbioc_1.48.0 MASS_7.3-60
## [127] plyr_1.8.9 parallel_4.3.2
## [129] listenv_0.9.0 lmom_3.0
## [131] deldir_2.0-2 splines_4.3.2
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## [135] locfit_1.5-9.8 spatstat.geom_3.2-7
## [137] markdown_1.12 RcppHNSW_0.5.0
## [139] reshape2_1.4.4 evaluate_0.23
## [141] foreach_1.5.2 httpuv_1.6.13
## [143] RANN_2.6.1 tidyr_1.3.0
## [145] getopt_1.20.4 polyclip_1.10-6
## [147] future_1.33.0 clue_0.3-65
## [149] scattermore_1.2 xtable_1.8-4
## [151] e1071_1.7-14 RSpectra_0.16-1
## [153] later_1.3.2 viridisLite_0.4.2
## [155] class_7.3-22 tibble_3.2.1
## [157] cluster_2.1.6 globals_0.16.2