rhysnewell/rosella-v0.5.4.zip
rhysnewell-rosella-3ec2bf7
.github
workflows
deploy-docs.yaml
1.5 kB
release-rosella.yml
1.4 kB
.gitignore
25 Bytes
.gitmodules
80 Bytes
.travis.yml
1.9 kB
CITATION.cff
521 Bytes
Cargo.toml
4.8 kB
INSTALL.md
93 Bytes
LICENSE
1.6 kB
README.md
1.7 kB
build_manuals.sh
271 Bytes
docs
README.md
1.4 kB
_include
.nojekyll
0 Bytes
images
rosella.png
235.9 kB
results
cami_high.png
65.4 kB
cami_low.png
80.1 kB
cami_med.png
73.2 kB
concepts.md
4.2 kB
faqs.md
1.6 kB
installation.md
1.4 kB
performance.md
2.0 kB
usage
README.md
3.3 kB
doctave.yaml
204 Bytes
flight
install.sh
1.9 kB
prelude
41 Bytes
release.py
3.1 kB
roff_to_md.sh
415 Bytes
rosella.yml
553 Bytes
src
bin
rosella.rs
4.4 kB
cli.rs
52.2 kB
clustering
cluster_utils.rs
4.4 kB
clusterer.rs
12.7 kB
mod.rs
145 Bytes
coverage
coverage_calculator.rs
28.6 kB
coverage_table.rs
15.1 kB
mod.rs
52 Bytes
embedding
embedder.rs
6.0 kB
mod.rs
17 Bytes
external
coverm_engine.rs
11.2 kB
mod.rs
22 Bytes
external_command_checker.rs
1.8 kB
graphs
mod.rs
32 Bytes
nearest_neighbour_graph.rs
3.7 kB
kmers
kmer_counting.rs
15.4 kB
mod.rs
22 Bytes
lib.rs
1.9 kB
recover
mod.rs
23 Bytes
recover_engine.rs
35.5 kB
refine
mod.rs
17 Bytes
refinery.rs
22.2 kB
sketch
contig_sketcher.rs
5.7 kB
mod.rs
50 Bytes
sketch_distances.rs
5.2 kB
tests
data
ben
1.fna.gz
37.9 kB
2.fna.gz
38.0 kB
four_strains
random10000.10_differences.sim_reads.1.fq
228.5 kB
random10000.10_differences.sim_reads.2.fq
228.5 kB
random10000.20_differences.sim_reads.1.fq
493.4 kB
random10000.20_differences.sim_reads.2.fq
493.4 kB
random10000.combined_differences.1.fq
228.5 kB
random10000.combined_differences.2.fq
228.5 kB
random10000.sim_reads.1.fq
228.5 kB
random10000.sim_reads.2.fq
228.5 kB
random10000.10_differences.fna
10.2 kB
random10000.10_differences.fna.sim_reads.1.fq
522.1 kB
random10000.10_differences.fna.sim_reads.2.fq
522.1 kB
random10000.10_differences.sim_reads..sam
525.9 kB
random10000.10_differences.sim_reads.1.aln
253.1 kB
random10000.10_differences.sim_reads.1.fq
228.5 kB
random10000.10_differences.sim_reads.2.aln
251.7 kB
random10000.10_differences.sim_reads.2.fq
228.5 kB
random10000.20_differences.fna
10.2 kB
random10000.20_differences.sim_reads.1.aln
561.4 kB
random10000.20_differences.sim_reads.1.fq
493.4 kB
random10000.20_differences.sim_reads.2.aln
557.5 kB
random10000.20_differences.sim_reads.2.fq
493.4 kB
random10000.dict
167 Bytes
random10000.fna
12.6 kB
random10000.fna.1.fna.gz.bam
146.9 kB
random10000.fna.1.fna.gz.bam.bai
96 Bytes
random10000.fna.fai
416 Bytes
random10000.fna.sim_reads.1.fq
103.6 kB
random10000.fna.sim_reads.2.fq
103.6 kB
random10000.sim_reads..sam
525.9 kB
random10000.sim_reads.1.aln
253.0 kB
random10000.sim_reads.1.fq
228.5 kB
random10000.sim_reads.2.aln
251.7 kB
random10000.sim_reads.2.fq
228.5 kB
random10000_strain_coverages.tsv
52 Bytes
three_strains
random10000.10_differences.sim_reads.1.fq
228.5 kB
random10000.10_differences.sim_reads.2.fq
228.5 kB
random10000.20_differences.sim_reads.1.fq
493.4 kB
random10000.20_differences.sim_reads.2.fq
493.4 kB
random10000.sim_reads.1.fq
228.5 kB
random10000.sim_reads.2.fq
228.5 kB
three_strains_combined
random10000.10_differences.sim_reads.1.fq
228.5 kB
random10000.10_differences.sim_reads.2.fq
228.5 kB
random10000.combined_differences.1.fq
228.5 kB
random10000.combined_differences.2.fq
228.5 kB
random10000.sim_reads.1.fq
228.5 kB
random10000.sim_reads.2.fq
228.5 kB
two_strains
random10000.10_differences.sim_reads.1.fq
228.5 kB
random10000.10_differences.sim_reads.2.fq
228.5 kB
random10000.sim_reads.1.fq
228.5 kB
random10000.sim_reads.2.fq
228.5 kB
samtools_stats.example.txt
35.6 kB
test2.bam
554.7 kB