Preview

emilydolson-phylotrackpy-8d456dc
- .github
  - ISSUE_TEMPLATE
    - bug_report.md
      
      587 Bytes
    - feature_request.md
      
      604 Bytes
  - dependabot.yml
    
    512 Bytes
  - workflows
    - ci.yml
      
      6.4 kB
- .gitignore
  
  1.8 kB
- .gitmodules
  
  125 Bytes
- .readthedocs.yaml
  
  830 Bytes
- CODE_OF_CONDUCT.md
  
  5.6 kB
- CONTRIBUTING.md
  
  4.0 kB
- Empirical
- LICENSE
  
  1.1 kB
- MANIFEST.in
  
  66 Bytes
- Makefile
  
  833 Bytes
- README.md
  
  8.8 kB
- codecov.yml
  
  833 Bytes
- constraints.in
  
  179 Bytes
- docs
  - Makefile
    
    7.8 kB
  - api.md
    
    360 Bytes
  - bibliography.bib
    
    2.6 kB
  - bibliography.md
    
    35 Bytes
  - code_of_conduct.md
    
    21 Bytes
  - community.md
    
    1.6 kB
  - conf.py
    
    10.0 kB
  - context.md
    
    2.4 kB
  - contributing.md
    
    18 Bytes
  - example_usage.ipynb
    
    9.1 kB
  - glossary.md
    
    2.1 kB
  - images
    - FullPhylogeny.png
      
      74.4 kB
    - phylogeny.jpg
      
      39.6 kB
  - index.md
    
    328 Bytes
  - introduction.md
    
    8.5 kB
  - make.bat
    
    7.7 kB
  - planning.md
    
    784 Bytes
  - position_tracking.md
    
    5.9 kB
  - quickstart.md
    
    8.8 kB
  - requirements.txt
    
    550 Bytes
- joss
  - assets
    - errorbar=se+hue=population-size+palette=deep+style=population-size+viz=plot-memprof+x=seconds+y=memory-mib+ext=.png
      
      76.6 kB
    - phylotrack composite.pdf
      
      561.6 kB
    - phylotrack-composite.png
      
      866.7 kB
    - phylotrack-profiling.pdf
      
      106.0 kB
    - phylotrack-profiling.png
      
      320.1 kB
    - phylotrack-schematic.pdf
      
      12.9 kB
    - phylotrack-schematic.png
      
      583.7 kB
    - viz=plot-timeprof+x=population-size+y=generations-per-second+ext=.png
      
      52.3 kB
  - bibtex-tidy.sh
    
    552 Bytes
  - letter.md
    
    2.9 kB
  - paper.bib
    
    33.8 kB
  - paper.md
    
    17.0 kB
  - scratch.md
    
    2.8 kB
- phylotrackpy
  - __init__.py
    
    194 Bytes
- profile
  - .gitignore
    
    7 Bytes
  - profile_batch.sh
    
    6.2 kB
  - profile_job.py
    
    2.2 kB
  - requirements.in
    
    137 Bytes
  - requirements.txt
    
    1.4 kB
- pyproject.toml
  
  548 Bytes
- requirements.in
  
  169 Bytes
- requirements.sh
  
  126 Bytes
- requirements.txt
  
  960 Bytes
- setup.cfg
  
  488 Bytes
- setup.py
  
  1.5 kB
- systematics_bindings.cpp
  
  53.5 kB
- test
  - assets
    - consolidated.csv
      
      292.6 kB
    - extant_root.csv
      
      124 Bytes
    - full.csv
      
      19.3 MB
    - hang_test.csv
      
      409.1 kB
    - systematics_snapshot.csv
      
      363 Bytes
  - test_systematics.py
    
    13.8 kB

emilydolson/phylotrackpy-v0.2.2-gamma.zip