Published July 12, 2024
| Version 0.0.1
Software
Open
interactive-render-workflow
-
1.
Delft University of Technology
Description
Interactive workflow for aligning volume electron microscopy datasets derived from FAST-EM, making use of render-ws. This software is being used to reconstruct FAST-EM array tomography datasets as described in Kievits et al. (2024). The software performs interactive post-correction of FAST-EM image data, import to render-ws, 2D stitching, 3D alignment and export to WebKnossos.
Files
interactive-render-workflow-0.0.1.zip
Files
(145.3 kB)
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md5:53aba20512019e6e5463cc9094f20294
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Additional details
Related works
- Is published in
- Journal article: 10.1515/mim-2024-0005 (DOI)
Software
- Repository URL
- https://github.com/hoogenboom-group/interactive-render-workflow
- Programming language
- Python, Jupyter Notebook
- Development Status
- Wip