Published May 9, 2024
| Version v6
Dataset
Open
Glioma spatialomics dataset
Creators
- Greenwald, Alissa1
- Galili Darnell, Noam1
- Hoefflin, Rouven1
- Simkin, Dor1
- Gonzalez-Castro, L. Nicolas2
- Mount, Christopher2
- Hirsch, Dana1
- Nomura, Masashi2
- Talpir, Tom1
- Kedmi, Merav1
- Goliand, Inna1
- Medici, Gioele3
- Li, Baoguo1
- Keren-Shaul, Hadas1
- Weller, Michael3
- Addadi, Yoseph1
- Neidert, Marian4
- Suvá, Mario2
- Tirosh, Itay1
- 1. Weizmann Institute of Science
- 2. Massachusetts General Hospital
- 3. University Hospital Zurich
- 4. Cantonal Hospital St. Gallen
Description
Data related to the paper "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" (Greenwald*, Galili-Darnell*, Hoefflin* et al., 2024. Cell 187(10): 2485-2501).
See visium_dataset_description.csv and readme_CODEX.txt
Thirteen fresh frozen GBM samples profiled by 10x Visium
Six fresh frozen IDH mutant samples profiled by 10x Visium
Twelve fresh frozen GBM samples profiled by CODEX
One GBM organoid model profiled by CODEX
Notes
See visium_dataset_description.csv and readme_CODEX.txt for full description.
Files
CODEX_antibody_validations.pdf
Files
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Additional details
Dates
- Updated
-
2024-05-09
Software
- Repository URL
- https://github.com/tiroshlab/Spatial_Glioma
- Programming language
- R