Alignment	Supplemental_Figure_8_Phylogeny
GokArlX1__Gefionella_okellyi_	GokArlX1
PygArfrp1b__Pygsuia_biforma_	PygArfrp1b
SsaArlX__Spironucleus_salmonicida_	SsaArlX
NgrArlX1__Naegleria_gruberi_	NgrArlX1
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_1521	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_1521
SRVP_Freyarchaeota_final_genome-New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_3113	New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_3113
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_1483	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_1483
SRVP_Freyarchaeota_final_genome-New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_3075	New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_3075
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_2890	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_45_1_2890
SRVP_Freyarchaeota_final_genome-New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_1173	New_Freya_genome_for_curation_rev_3_marked_gaps_check_remap_1_1173
SRVP_Atabeyarchaeota_1_curated.FINAL_iMGE-xii_6	Atabeya-1_iMGExii_6
Ata_3-SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_10	Atabeya-3_SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_10
SRVP_Atabeyarchaeota_2_NP_curated_FINAL-SRVP_Atabeyarchaeota_2_NP_curated_FINAL_1_2278	SRVP_Atabeyarchaeota_2_NP_curated_FINAL_1_2278
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271_1_2291	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271_1_2291
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231_1_2548	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231_1_2548
FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL-FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL_1_2151	Atabeya-2_FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL_1_2151
SR_VP_9_9_2021_9_1B_1_5m_Archaea_47_83_contigs-SR_VP_9_9_2021_9_1B_1_5m_scaffold_8_25_18	SR_VP_9_9_2021_9_1B_1_5m_scaffold_8_25_18
Ata_3-SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_18	Atabeya-3_SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_18
SRVP_Atabeyarchaeota_1_curated.FINAL_iMGE-xii_29	Atabeya-1_iMGExii_29
Ata_3-SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_19	Atabeya-3_SR_VP_9_9_2021_72_4B_1_05m_2_scaffold_10132_42_19
SRVP_Atabeyarchaeota_2_NP_curated_FINAL-SRVP_Atabeyarchaeota_2_NP_curated_FINAL_1_2269	SRVP_Atabeyarchaeota_2_NP_curated_FINAL_1_2269
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271_1_2299	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_271_1_2299
SR_VP_9_9_2021_9_1B_1_5m_Archaea_47_83_contigs-SR_VP_9_9_2021_9_1B_1_5m_scaffold_8_25_10	SR_VP_9_9_2021_9_1B_1_5m_scaffold_8_25_10
SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231-SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231_1_2540	SR_VP_9_9_2021_81_5A_0_75m_PACBIO_HIFI_HIFIASM_META_1231_1_2540
FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL-FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL_1_2143	Atabeya-2_FINAL_SR_VP_26_10_2019_2_100cm_Atabeya_2_FINAL_1_2143