RDFized PCORnet CDM
type: Ontology
imports: omrse.owl
contributor: Amanda Hicks
comment: An RDF/OWL representation of the PCORnet Common Data Model Version 3.0 Contains Demographic Table birth time birth date sex - male/female/ambigous Hispanic - refusal to answer Hispanic - Hispanic, non-Hispanic race - refusal to answer To Do Demographic Table sex - other/unknown (working on a general strategy for other and unknown null flavors) race -
contributor: William R. Hogan
contributor: Josh Hanna

BFO OWL specification label
type: AnnotationProperty

BFO CLIF specification label
type: AnnotationProperty

example of usage
type: AnnotationProperty

definition
type: AnnotationProperty
label: textual definition

editor note
type: AnnotationProperty

imported from
type: AnnotationProperty

elucidation
type: AnnotationProperty

has associated axiom(nl)
type: AnnotationProperty

has associated axiom(fol)
type: AnnotationProperty

external_ontology_notes
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

in_subset
type: AnnotationProperty

label

see also

exists at
type: ObjectProperty
inverse of: during which exists
domain: BFO_0000001
range: BFO_0000008
BFO OWL specification label: exists-at
BFO CLIF specification label: existsAt
editor note: BFO2 Reference: entity
editor note: BFO2 Reference: temporal region
elucidation: b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

has occurrent part
type: ObjectProperty
sub property of: topObjectProperty
inverse of: part of occurrent
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: o-has-part
BFO CLIF specification label: hasOccurrentPart
example of usage: [copied from inverse property 'part of occurrent'] Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: [copied from inverse property 'part of occurrent'] The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: [copied from inverse property 'part of occurrent'] the first set of the tennis match occurrent_part_of the tennis match.
definition: b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: [copied from inverse property 'part of occurrent'] BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: [copied from inverse property 'part of occurrent'] BFO2 Reference: occurrent
imported from: http://purl.obolibrary.org/obo/vo.owl
elucidation: [copied from inverse property 'part of occurrent'] b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(fol): (iff (hasOccurrentPart a b) (occurrentPartOf b a)) // axiom label in BFO2 CLIF: [007-001]

has proper occurrent part
type: ObjectProperty
sub property of: has occurrent part
inverse of: proper part of occurrent
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: o-has-ppart
BFO CLIF specification label: hasProperOccurrentPart
definition: [copied from inverse property 'proper part of occurrent'] b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
definition: b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001
imported from: http://purl.obolibrary.org/obo/vo.owl

has temporal part
type: ObjectProperty
sub property of: has occurrent part
inverse of: temporal part of
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: has-t-part
example of usage: [copied from inverse property 'temporal part of'] the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: [copied from inverse property 'temporal part of'] the process boundary which separates the 3rd and 4th years of your life.
example of usage: [copied from inverse property 'temporal part of'] your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: [copied from inverse property 'temporal part of'] b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: [copied from inverse property 'temporal part of'] b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
imported from: http://purl.obolibrary.org/obo/vo.owl

part of occurrent
type: ObjectProperty
sub property of: topObjectProperty
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: o-part-of
BFO CLIF specification label: occurrentPartOf
example of usage: Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: the first set of the tennis match occurrent_part_of the tennis match.
definition: [copied from inverse property 'has occurrent part'] b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: occurrent
imported from: http://purl.obolibrary.org/obo/vo.owl
elucidation: b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(nl): occurrent_part_of is antisymmetric. (axiom label in BFO2 Reference: [123-001])
has associated axiom(nl): occurrent_part_of is reflexive (every occurrent entity is an occurrent_part_of itself). (axiom label in BFO2 Reference: [113-002])
has associated axiom(nl): occurrent_part_of is transitive. (axiom label in BFO2 Reference: [112-001])
has associated axiom(nl): occurrent_part_of satisfies unique product. (axiom label in BFO2 Reference: [125-001])
has associated axiom(nl): occurrent_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [124-001])
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (not (= x y))) (exists (z) (and (occurrentPartOf z y t) (not (exists (w) (and (occurrentPartOf w x t) (occurrentPartOf w z t)))))))) // axiom label in BFO2 CLIF: [124-001]
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (occurrentPartOf y x t)) (= x y))) // axiom label in BFO2 CLIF: [123-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (occurrentPartOf v x t) (occurrentPartOf v y t))) (exists (z) (forall (u w) (iff (iff (occurrentPartOf w u t) (and (occurrentPartOf w x t) (occurrentPartOf w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [125-001]
has associated axiom(fol): (forall (x y z) (if (and (occurrentPartOf x y) (occurrentPartOf y z)) (occurrentPartOf x z))) // axiom label in BFO2 CLIF: [112-001]
has associated axiom(fol): (forall (x) (if (Occurrent x) (occurrentPartOf x x))) // axiom label in BFO2 CLIF: [113-002]

proper part of occurrent
type: ObjectProperty
sub property of: part of occurrent
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: o-ppart-of
BFO CLIF specification label: properOccurrentPartOf
definition: [copied from inverse property 'has proper occurrent part'] b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001
definition: b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
has associated axiom(fol): (iff (properOccurrentPartOf a b) (and (occurrentPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [005-001]

temporal part of
type: ObjectProperty
sub property of: part of occurrent
type: TransitiveProperty
domain: BFO_0000003
range: BFO_0000003
BFO OWL specification label: t-part-of
BFO CLIF specification label: temporalPartOf
example of usage: the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: the process boundary which separates the 3rd and 4th years of your life.
example of usage: your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
imported from: http://purl.obolibrary.org/obo/vo.owl
has associated axiom(nl): if b proper_temporal_part_of c, then there is some d which is a proper_temporal_part_of c and which shares no parts with b. (axiom label in BFO2 Reference: [117-002])
has associated axiom(fol): (forall (x y) (if (properTemporalPartOf x y) (exists (z) (and (properTemporalPartOf z y) (not (exists (w) (and (temporalPartOf w x) (temporalPartOf w z)))))))) // axiom label in BFO2 CLIF: [117-002]
has associated axiom(fol): (iff (properTemporalPartOf a b) (and (temporalPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [116-001]
has associated axiom(fol): (iff (temporalPartOf a b) (and (occurrentPartOf a b) (exists (t) (and (TemporalRegion t) (occupiesSpatioTemporalRegion a t))) (forall (c t_1) (if (and (Occurrent c) (occupiesSpatioTemporalRegion c t_1) (occurrentPartOf t_1 r)) (iff (occurrentPartOf c a) (occurrentPartOf c b)))))) // axiom label in BFO2 CLIF: [078-003]

occupies temporal region
type: ObjectProperty
sub property of: exists at
inverse of: has temporal occupant
domain: BFO_0000003
range: BFO_0000008
BFO OWL specification label: spans
BFO CLIF specification label: occupiesTemporalRegion
elucidation: p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

has temporal occupant
type: ObjectProperty
sub property of: during which exists
domain: BFO_0000008
range: BFO_0000003
BFO OWL specification label: span-of
BFO CLIF specification label: spanOf
elucidation: [copied from inverse property 'occupies temporal region'] p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

during which exists
type: ObjectProperty
domain: BFO_0000008
range: BFO_0000001
BFO OWL specification label: during-which-exists
editor note: [copied from inverse property 'exists at'] BFO2 Reference: entity
editor note: [copied from inverse property 'exists at'] BFO2 Reference: temporal region
elucidation: [copied from inverse property 'exists at'] b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

is_specified_input_of
type: ObjectProperty
sub property of: RO_0000056
range: OBI_0000011
IAO_0000111: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
IAO_0000114: IAO_0000122
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
IAO_0000117: Alan Ruttenberg
IAO_0000117: PERSON:Bjoern Peters

database extract, transform, and load process
type: Class
subclass of: OBI_0000011
subclass of: Restriction
  on property: OBI_0000293
  some values from: IAO_0000030
subclass of: Restriction
  on property: OBI_0000299
  some values from: IAO_0000030
IAO_0000111: database extract, transform, and load process
definition: A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.
editor note: Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second
editor note: Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process. We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output.
IAO_0000117: PERSON:Alan Ruttenberg
IAO_0000118: ETL
IAO_0000119: WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load
IAO_0000233: https://github.com/information-artifact-ontology/IAO/issues/187

biological sex
type: Class
subclass of: organismal quality
definition: An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
imported from: http://purl.obolibrary.org/obo/pato.owl
has_obo_namespace: quality
id: PATO:0000047
in_subset: attribute slim

female
type: Class
subclass of: phenotypic sex
definition: A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
imported from: http://purl.obolibrary.org/obo/pato.owl
has_obo_namespace: quality
id: PATO:0000383
in_subset: mpath slim
in_subset: value slim

male
type: Class
subclass of: phenotypic sex
definition: A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
imported from: http://purl.obolibrary.org/obo/pato.owl
has_obo_namespace: quality
id: PATO:0000384
in_subset: mpath slim
in_subset: value slim

phenotypic sex
type: Class
subclass of: biological sex
imported from: http://purl.obolibrary.org/obo/pato.owl
has_obo_namespace: quality
id: PATO:0001894
in_subset: attribute slim

organismal quality
type: Class
subclass of: BFO_0000019
definition: A quality that inheres in an entire organism or part of an organism.
imported from: http://purl.obolibrary.org/obo/pato.owl
has_obo_namespace: quality
id: PATO:0001995

answer to ID question
type: Class
subclass of: response to an ID question asking process

response to an ID question asking process
type: Class
subclass of: response to a question asking process
subclass of: Restriction
  on property: RO_0000056
  some values from: ID question asking process

ID question asking process
type: Class
subclass of: question asking process

refusal to answer datum
type: Class
subclass of: response to a question asking process

response to a question asking process
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: RO_0000056
  some values from: question asking process
IAO_0000117: Amanda Hicks

ethnic ID question asking process
type: Class
subclass of: ID question asking process

race ID question asking process
type: Class
subclass of: ID question asking process

PCORnet racial identification process
type: Class
subclass of: OMRSE_00000099

processual entity
type: Class
subclass of: BFO_0000015
definition: An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity.
has_obo_namespace: uberon
id: UBERON:0000000
in_subset: upper level

death stage
type: Class
subclass of: life cycle stage
definition: End of the life of an organism.
imported from: http://purl.obolibrary.org/obo/uberon.owl
external_ontology_notes: ncit:Death is an outcome
database_cross_reference: XAO:0000437
database_cross_reference: XtroDO:0000085
has_obo_namespace: uberon
has_related_synonym: death
id: UBERON:0000071

life cycle
type: Class
subclass of: BFO_0000182
definition: An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism.
imported from: http://purl.obolibrary.org/obo/uberon.owl
database_cross_reference: FBdv:00000000
database_cross_reference: HsapDv:0000001
database_cross_reference: MmusDv:0000001
database_cross_reference: OGES:000011
database_cross_reference: ncithesaurus:Life
has_exact_synonym: entire life cycle
has_exact_synonym: entire lifespan
has_exact_synonym: life
has_exact_synonym: lifespan
has_obo_namespace: uberon
id: UBERON:0000104
in_subset: upper level

life cycle stage
type: Class
subclass of: BFO_0000011
definition: A spatiotemporal region encompassing some part of the life cycle of an organism.
editor note: this class represents a proper part of the life cycle of an organism. The class 'life cycle' should not be placed here
imported from: http://purl.obolibrary.org/obo/uberon.owl
external_ontology_notes: the WBls class 'all stages' belongs here as it is the superclass of other WBls stages
external_ontology_notes: we map the ZFS unknown stage here as it is logically equivalent to saying *some* life cycle stage
database_cross_reference: BILS:0000105
database_cross_reference: EFO:0000399
database_cross_reference: FBdv:00007012
database_cross_reference: FMA:24120
database_cross_reference: HsapDv:0000000
database_cross_reference: MmusDv:0000000
database_cross_reference: OlatDv:0000010
database_cross_reference: PdumDv:0000090
database_cross_reference: WBls:0000002
database_cross_reference: XAO:1000000
database_cross_reference: ZFS:0000000
database_cross_reference: ZFS:0100000
database_cross_reference: ncithesaurus:Developmental_Stage
has_narrow_synonym: developmental stage
has_narrow_synonym: stage
has_obo_namespace: uberon
id: UBERON:0000105
in_subset: efo slim
in_subset: upper level

neonate stage
type: Class
subclass of: life cycle stage
definition: Of or pertaining to the period of time immediately following birth, or to the newborn.
editor note: consider splitting infant/newborn
imported from: http://purl.obolibrary.org/obo/uberon.owl
database_cross_reference: Infant
database_cross_reference: Category:Infant organism
database_cross_reference: Category:Newborn organism
database_cross_reference: BTO:0001762
database_cross_reference: EV:0300037
database_cross_reference: HsapDv:0000082
database_cross_reference: MmusDv:0000096
database_cross_reference: NIF_Organism:birnlex_695
database_cross_reference: OGES:000025
has_exact_synonym: neonatal stage
has_narrow_synonym: fledgling stage
has_narrow_synonym: hatchling
has_narrow_synonym: hatchling stage
has_narrow_synonym: infant stage
has_narrow_synonym: nestling stage
has_narrow_synonym: pouch stage
has_narrow_synonym: puggle
has_narrow_synonym: puggle stage
has_obo_namespace: uberon
has_related_synonym: newborn stage
id: UBERON:0007221

life cycle temporal boundary
type: Class
subclass of: processual entity
definition: A temporal boundary connecting two life cycle stages that follow in immediate succession. A temporal boundary is an abstract, instantaneous entity.
has_obo_namespace: uberon
id: UBERON:0035943
in_subset: upper level

life-death temporal boundary
type: Class
subclass of: life cycle temporal boundary
definition: A life cycle temporal boundary that marks the end of the life cycle of the organism.
has_exact_synonym: end of life cycle
has_exact_synonym: moment of death
has_exact_synonym: time of death
has_obo_namespace: uberon
has_related_synonym: death
has_related_synonym: end of life
id: UBERON:0035944

start of neonate stage
type: Class
subclass of: life cycle temporal boundary
definition: A life cycle temporal boundary that marks the start of the neonate stage of the organism.
has_exact_synonym: moment of birth
has_exact_synonym: time of birth
has_obo_namespace: uberon
has_related_synonym: birth
id: UBERON:0035946

PROMIS response data item
type: Class
subclass of: IAO_0000027
subclass of: Restriction
  on property: BFO_0000051
  some values from: PCORnet CDM item identifier
subclass of: Restriction
  on property: BFO_0000051
  some values from: option as member of answer set

question asking process
type: Class
subclass of: IAO_0021003
subclass of: Restriction
  on property: RO_0000057
  some values from: NCBITaxon 9606
subclass of: Restriction
  on property: RO_0000057
  some values from: material information bearer of question text plus answer set

PCORnet racial identity datum
type: Class
subclass of: OMRSE_00000098
IAO_0000117: Amanda Hicks
comment: A racial identity that is the output of a racial identification process that uses the PCORnet CDM race or terminology. PCORnet CDM claims to use the OMB racial classification, but the crucial difference is that PCORnet CDM requires persons to identify with only one category whereas the OMB allows for multiple racial identities as outputs of an identification process.

question text
type: Class
subclass of: IAO_0000030

answer set
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: RO_0002351
  some values from: option as member of answer set

PCORnet American Indian or Alaska Native identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

PCORnet Asian identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

material information bearer of question text plus answer set
type: Class
subclass of: BFO_0000040
subclass of: Restriction
  on property: RO_0000053
  some values from: Class
    intersection of: BFO_0000020
    intersection of: Restriction
      on property: RO_0000059
      some values from: question text
subclass of: Restriction
  on property: RO_0000053
  some values from: Class
    intersection of: BFO_0000020
    intersection of: Restriction
      on property: RO_0000059
      some values from: answer set

PCORnet black or African American identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

PCORnet CDM item identifier
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: IAO_0020012
  some values from: PCORnet item

PCORnet item
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: BFO_0000051
  some values from: question text
subclass of: Restriction
  on property: BFO_0000051
  some values from: answer set
IAO_0000232: PCORnet v. 3.0

option as member of answer set
type: Class
subclass of: IAO_0000030
subclass of: Restriction
  on property: RO_0002350
  some values from: answer set

PCORnet Native Hawaiian or other Pacific Islander identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

PCORnet white identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

PCORnet multiple race identity datum
type: Class
subclass of: PCORnet racial identity datum
IAO_0000117: Amanda Hicks

PCORnet Hispanic identity datum
type: Class
subclass of: OMRSE_00000127
subclass of: PCORnet ethnic identity datum
IAO_0000117: Amanda Hicks
comment: From PCORnet CDM "A person of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin, regardless of race."

PCORnet not Hispanic identity datum
type: Class
subclass of: OMRSE_00000128
subclass of: PCORnet ethnic identity datum
IAO_0000117: Amanda Hicks

PCORnet ethnic identity datum
type: Class
subclass of: OMRSE_00000100
IAO_0000117: Amanda Hicks

PCORnet patient identifier
type: Class
subclass of: IAO_0000578
definition: A centrally registered identifier that denotes a person in a PCORnet data mart and is used to link across tables. This identifier is not necessarily unique within PCORnet.
IAO_0000117: Amanda Hicks

John Doe
type: NamedIndividual
type: NCBITaxon 9606
RO_0000056: John Doe's neonate stage

John Doe's birth
type: NamedIndividual
type: start of neonate stage
temporal part of: John Doe's neonate stage
occupies temporal region: 23:59

23:59
type: NamedIndividual
type: BFO_0000148
temporal part of: John Doe's neonate stage
temporal part of: 2000-02-02

John Doe's neonate stage
type: NamedIndividual
type: neonate stage
occupies temporal region: 1D temporal interval occuped by John Doe's neonate stage

1D temporal interval occuped by John Doe's neonate stage
type: NamedIndividual
type: BFO_0000038

2000-02-02
type: NamedIndividual
type: BFO_0000038

rta1
type: NamedIndividual
type: refusal to answer datum
IAO_0000136: Jane Doe
RO_0000056: eiqap1

eiqap1
type: NamedIndividual
type: ethnic ID question asking process

Jane Doe
type: NamedIndividual
type: NCBITaxon 9606
RO_0000056: eiqap1

g
type: NamedIndividual
type: IAO_0020000
IAO_0020012: John Doe

p4
type: NamedIndividual
type: NCBITaxon 9606

f1
type: NamedIndividual
type: female
RO_0000052: p4

p5
type: NamedIndividual
type: NCBITaxon 9606

m1
type: NamedIndividual
type: male
RO_0000052: p5

ridqap1
type: NamedIndividual
type: race ID question asking process

Jane Doe's American Indian or Alaska Native identity datum
type: NamedIndividual
type: OMRSE_00000180

p6
type: NamedIndividual
type: NCBITaxon 9606
RO_0000056: ridqap1

rta2
type: NamedIndividual
type: refusal to answer datum
IAO_0000136: p6
RO_0000056: ridqap1

Jane Doe's racial identification process
type: NamedIndividual
type: OMRSE_00000099

ETL process of Jane Doe’s racial identity datum
type: NamedIndividual
type: database extract, transform, and load process

John Doe's patient role
type: NamedIndividual
type: OMRSE_00000011
RO_0000052: John Doe

1234
type: NamedIndividual
type: IAO_0000028

John Doe's Hispanic or Latino identity datum
type: NamedIndividual
type: OMRSE_00000127
IAO_0000136: John Doe
is_specified_input_of: ETL process of John Doe’s ethnic identity datum
OBI_0000312: John Doe’s ethnic identification process

John Doe’s ethnic identification process
type: NamedIndividual
type: OMRSE_00000101

John Doe’s PCORnet Hispanic identity datum
type: NamedIndividual
type: PCORnet Hispanic identity datum
IAO_0000136: John Doe
OBI_0000312: ETL process of John Doe’s ethnic identity datum

ETL process of John Doe’s ethnic identity datum
type: NamedIndividual
type: database extract, transform, and load process

Jane Doe's not Hispanic or Latino identity datum
type: NamedIndividual
type: OMRSE_00000128
IAO_0000136: Jane Doe
is_specified_input_of: ETL process of Jane Doe’s ethnic identity datum
OBI_0000312: Jane Doe’s ethnic identification process

Jane Doe’s ethnic identification process
type: NamedIndividual
type: OMRSE_00000101

Jane Doe’s PCORnet not Hispanic identity datum
type: NamedIndividual
type: PCORnet not Hispanic identity datum
IAO_0000136: Jane Doe
OBI_0000312: ETL process of Jane Doe’s ethnic identity datum

ETL process of John Doe’s ethnic identity datum
type: NamedIndividual
type: database extract, transform, and load process

ETL process of Jane Doe’s ethnic identity datum
type: NamedIndividual
type: database extract, transform, and load process