Introduction back to ToC

The workflow module represents the “procedures”, “subprocedures” (steps or instructions), “actions” (or verbs), experimental inputs “samples/specimens" and other participants such as “reagents” and “instruments”. For cases where authors only have an extensive list of steps, the SP considers these as subprocedures under a “procedure" container. In this way we are representing protocols with only a long list of steps as well as those with groups of steps. This also allows us to represent more complex protocols that usually result from merging several protocols.

Namespace declarations

Table 1: Namespaces used in the document
sp<http://purl.org/net/SMARTprotocol#>
bfo<http://www.ifomis.org/bfo/1.1#>
bfo<http://www.ifomis.org/bfo/1.1/snap#>
cl<http://purl.obolibrary.org/obo/cl.owl#>
crisp<http://purl.bioontology.org/ontology/CSP/>
dc<http://purl.org/dc/terms/>
efo<http://www.ebi.ac.uk/efo/>
exact<http://www.owl-ontologies.com/Ontology1184060740.owl#>
iao<http://purl.obolibrary.org/obo/iao.owl#>
mesh<http://purl.bioontology.org/ontology/MSH/>
mgedontology-owl<http://mged.sourceforge.net/ontologies/MGEDOntology.owl#>
NCI Thesaurus<http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#>
ncbitaxon<http://purl.bioontology.org/ontology/NCBITAXON/>
npo<http://purl.bioontology.org/ontology/npo#>
obo<http://purl.obolibrary.org/obo/>
obi<http://purl.obolibrary.org/obo/obi>
po<http://purl.obolibrary.org/obo/po#>
ro<http://www.obofoundry.org/ro/ro.owl#>
snomedct<http://purl.bioontology.org/ontology/SNOMEDCT/>
sio<http://semanticscience.org/resource/>
uberon<http://purl.obolibrary.org/obo/uberon#>