The document module facilitates archiving; our SP-document module is a proposal to standardize document aspects in experimental protocols. We analyzed 530 experimental protocols gathered from several sources (the protocols are available here). From this data set, we extracted a set of metadata element that are necessary and sufficient to represent document aspects in experimental protocols.
sp | <http://purl.org/net/SMARTprotocol#> |
bfo | <http://www.ifomis.org/bfo/1.1#> |
bfo | <http://www.ifomis.org/bfo/1.1/snap#> |
biro | <http://purl.org/spar/biro/> |
cellline | <http://www.ebi.ac.uk/cellline#> |
cl | <http://purl.obolibrary.org/obo/cl.owl#> |
chmo | <http://purl.obolibrary.org/obo/chmo#> |
crisp | <http://purl.bioontology.org/ontology/CSP/> |
dc | <http://purl.org/dc/terms/> |
efo | <http://www.ebi.ac.uk/efo/> |
exact | <http://www.owl-ontologies.com/Ontology1184060740.owl#> |
iao | <http://purl.obolibrary.org/obo/iao.owl#> |
mesh | <http://purl.bioontology.org/ontology/MSH/> |
mgedontology-owl | <http://mged.sourceforge.net/ontologies/MGEDOntology.owl#> |
NCI Thesaurus | <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> |
ncbitaxon | <http://purl.bioontology.org/ontology/NCBITAXON/> |
obo | <http://purl.obolibrary.org/obo/> |
obi | <http://purl.obolibrary.org/obo/obi> |
po | <http://purl.obolibrary.org/obo/po#> |
prism | <http://prismstandard.org/namespaces/basic/2.0/> |
ro | <http://www.obofoundry.org/ro/ro.owl#> |
snomedct | <http://purl.bioontology.org/ontology/SNOMEDCT/> |
sio | <http://semanticscience.org/resource/> |
uberon | <http://purl.obolibrary.org/obo/uberon#> |