References back to ToC
- [BFO]:Robert Arp and Barry Smith. (2008)
Function, Role, and Disposition in Basic Formal Ontology. Available from Nature Precedings.
- [BAO]:Abeyruwan, U. Vempati, H. Küçük, U. Visser, A. Koleti, A. Mir, K. Sakurai, C. Chung, J. Bittker, P. Clemons, S. Brudz, A. Siripala, A. Morales, M. Romacker, D. Twomey, S. Bureeva, V. Lemmon, and Schürer SC. 2014 “Evolving BioAssay Ontology (BAO): Modularization, Integration and Applications” Journal of Biomedical Semantics, vol. 5, no. 1:S5.
- [ChEBI]:Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Janna Hastings, Martin Zbinden, Alan McNaught, Rafael Alcántara, Michael Darsow, Mickaël Guedj, and Michael Ashburner. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res.Vol. 36(Database issue), pages D344–D350.
- [CLO]:Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer TC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, Brush MH, Haendel MA, Zheng J, Stoeckert CJ, Peters B, Mungall CJ, Carey TE, States DJ, Athey BD, He Y. 2014 CLO: The Cell Line Ontology. Journal of Biomedical Semantics. 5:37. doi:10.1186/2041-1480-5-37. PMID: 25852852. PMCID: PMC4387853.
- [EFO]:Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H. 2010 Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics, 26(8):1112-1118.
- [ERO]:Torniai C, Brush M, Vasilevsky N, Segerdell E, Haendel M, Shaffer C, Johnson T, Corday K. 2011 Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned. International Conference of Biomedical Ontologies (ICBO).
- [EXACT]: Larisa N. Soldatova, Wayne Aubrey, Ross D. King and Amanda Clare. (2008).
The EXACT description of biomedical protocols. Bioinformatics.Vol. 24 ISMB 2008, pages i295–i303.
- [MGEDO]:Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr. (2006) The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics. Vol. 1; 22(7), pages 866-73.
- [NCI Thesaurus] NCI Thesaurus.
- [NCBI Taxon]Scott Federhen. 2012 The NCBI Taxonomy database. Nucleic Acids Res, 40 (D1): D136-D143. doi: 10.1093/nar/gkr1178.
- [NPO] NPO:NanoParticle Ontology for Cancer Nanotechnology Research.
- [OBI]:Mélanie Courtot, William Bug, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan R. Brinkman and Alan Ruttenberg. (2008) The OWL of Biomedical Investigations. OWLED.
- [OBO_REL]:Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L Rector and Cornelius Rosse. (2005) Relations in biomedical ontologies. Genome Biology, Vol. 6:R46.
- [SO]:Karen Eilbeck, Suzanna E Lewis, Christopher J Mungall, Mark Yandell, Lincoln Stein, Richard Durbin and Michael Ashburner. (2005) The Sequence Ontology: a tool for the unification of genome annotations. Genome Biology, Vol. 6:R44.