line |
true |
false |
branch |
52
|
818 |
2454 |
if ($k eq 'label') { }
|
|
818 |
1636 |
elsif ($k eq 'accession') { }
|
|
818 |
818 |
elsif ($k eq 'type') { }
|
|
818 |
0 |
elsif ($k eq 'ccds') { }
|
59
|
818 |
222 |
if ($vars{'type'} eq $type)
|
64
|
818 |
0 |
if (defined $good) { }
|
77
|
0 |
1700 |
unless (defined $a)
|
81
|
0 |
1700 |
unless ($a->isa('Sanger::CGP::Vagrent::Data::Annotation'))
|
85
|
882 |
818 |
if (exists $$self{'_anno'} and defined $$self{'_anno'} and scalar @{$$self{'_anno'};} > 0) { }
|
88
|
0 |
1323 |
if ($ca->getContext eq $a->getContext)
|
94
|
882 |
0 |
if ($good)
|
104
|
818 |
0 |
if (defined $$self{'_anno'}) { }
|
114
|
3400 |
3400 |
if $a->getContext eq $ctx
|
138
|
2215 |
0 |
if (defined $c)
|
139
|
1397 |
818 |
if (defined $self->getClassifications) { }
|
140
|
1397 |
0 |
unless first sub {
$_ eq $c;
}
, $self->getClassifications
|
150
|
5248 |
818 |
if exists $$self{'_class'} and defined $$self{'_class'}
|
156
|
0 |
0 |
if (exists $$self{'_class'} and defined $$self{'_class'})
|
157
|
0 |
0 |
if (first sub {
$_ eq $class;
}
, @{$$self{'_class'};}) { }
|
168
|
0 |
0 |
unless ($marker->isa('Sanger::CGP::Vagrent::Bookmarkers::AbstractBookmarker'))
|
179
|
0 |
0 |
if (defined $marker) { }
|
180
|
0 |
0 |
unless ($marker->isa('Sanger::CGP::Vagrent::Bookmarkers::AbstractBookmarker'))
|
186
|
0 |
0 |
if (exists $$self{'_bookmarks'} and exists $$self{'_bookmarks'}{ref $marker} and $$self{'_bookmarks'}{ref $marker} == 1)
|
190
|
0 |
0 |
if (exists $$self{'_bookmarks'} and defined $$self{'_bookmarks'})
|