line |
true |
false |
branch |
51
|
0 |
1724 |
unless (defined $gp and $gp->isa('Sanger::CGP::Vagrent::Data::AbstractGenomicPosition'))
|
56
|
1704 |
20 |
if defined $trans
|
63
|
0 |
0 |
unless defined $gr
|
64
|
0 |
0 |
if ($gr->getMinPos == $gr->getMaxPos and $gr->getMaxPos == 0) { }
|
70
|
0 |
0 |
unless defined $$self{'_dumpInfo'}{'_geneList'}
|
71
|
0 |
0 |
unless defined $$self{'_dumpInfo'}{'_transcriptStore'}
|
76
|
0 |
0 |
unless defined $$self{'_dumpInfo'}{'_geneList'}[$i]
|
78
|
0 |
0 |
unless defined $transList and scalar @$transList > 0
|
88
|
0 |
0 |
unless open my $fh, $cmd
|
109
|
0 |
0 |
unless open my $fh, $cmd
|
123
|
862 |
862 |
unless defined $$self{'_cache_tbx'}
|
126
|
0 |
1724 |
if ($gp->getMinPos < $SEARCH_BUFFER) { }
|
132
|
0 |
1724 |
unless defined $iter
|
148
|
862 |
0 |
if ($k eq 'cache')
|
157
|
0 |
862 |
unless (-e $cache and -f $cache and -r $cache)
|
161
|
0 |
862 |
unless (-e $cache_index and -f $cache_index and -r $cache_index)
|
166
|
0 |
862 |
unless (-e $fa and -f $fa and -r $fa)
|
170
|
0 |
862 |
unless (-e $fai and -f $fai and -r $fai)
|
179
|
852 |
852 |
unless (defined $$self{'_fai_obj'})
|