Coverage Summary

Module Vagrent
Version v3.2.3
Database: /nfs/users/nfs_a/am3/projects/git/VAGrENT/reports
Report date: 2018-03-06 17:02:42
Perl version: v5.16.3
OS: linux
Thresholds: < 50% < 85% < 100% = 100%

Restrict to regex:

file bran sub pod total
Total 73.4 88.4 69.2 76.4
lib/Sanger/CGP/Vagrent.pm n/a 100.0 n/a 100.0
lib/Sanger/CGP/Vagrent/Annotators/AbstractAnnotator.pm 73.1 86.8 50.0 74.7
lib/Sanger/CGP/Vagrent/Annotators/ComplexIndelAnnotator.pm 86.2 94.1 n/a 87.3
lib/Sanger/CGP/Vagrent/Annotators/DeletionAnnotator.pm 87.7 100.0 n/a 88.8
lib/Sanger/CGP/Vagrent/Annotators/InsertionAnnotator.pm 88.4 94.7 n/a 89.6
lib/Sanger/CGP/Vagrent/Annotators/SimpleSubstitutionAnnotator.pm 84.5 100.0 n/a 87.6
lib/Sanger/CGP/Vagrent/Data/AbstractGenomicPosition.pm 61.5 76.4 90.0 71.7
lib/Sanger/CGP/Vagrent/Data/AbstractVariation.pm n/a 75.0 100.0 80.0
lib/Sanger/CGP/Vagrent/Data/Annotation.pm 87.0 97.5 100.0 93.6
lib/Sanger/CGP/Vagrent/Data/AnnotationGroup.pm 52.0 83.3 100.0 68.2
lib/Sanger/CGP/Vagrent/Data/ComplexIndel.pm 50.0 88.8 100.0 63.4
lib/Sanger/CGP/Vagrent/Data/Deletion.pm 45.0 87.5 100.0 61.2
lib/Sanger/CGP/Vagrent/Data/Exon.pm 0.0 75.0 100.0 60.0
lib/Sanger/CGP/Vagrent/Data/Insertion.pm 66.6 87.5 100.0 82.3
lib/Sanger/CGP/Vagrent/Data/Substitution.pm 61.1 88.8 100.0 74.1
lib/Sanger/CGP/Vagrent/Data/Transcript.pm 9.0 77.5 90.0 54.3
lib/Sanger/CGP/Vagrent/Ontology/SequenceOntologyClassifier.pm 33.3 92.5 0.0 50.9
lib/Sanger/CGP/Vagrent/TranscriptSource/AbstractTranscriptSource.pm 0.0 76.9 100.0 60.8
lib/Sanger/CGP/Vagrent/TranscriptSource/FileBasedTranscriptSource.pm 36.8 76.1 100.0 52.4