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NAME

Sanger::CGP::Vagrent::GenomicRegionDumper::IndelGenomicRegionDumper - Class for saving regions of the genome that would provide annotations for Insertion, Deletion or Complex variation types.

DESCRIPTION

This is an implementation of the AbstractGenomicRegionDumper to handle indel type variants, specifically any kind of variant that has the potential cause a length change in the genomic sequence.

Using the supplied TranscriptSource, Transcripts that could generate annotations are selected and the relevent genomic regions are saved to the specified GenomicRegionWriter

Inherits from Sanger::CGP::Vagrent::GenomicRegionDumper::AbstractGenomicRegionDumper.

METHODS

See Sanger::CGP::Vagrent::GenomicRegionDumper::AbstractGenomicRegionDumper

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