Subroutine Coverage

lib/Sanger/CGP/Vagrent/Ontology/SequenceOntologyClassifier.pm
Criterion Covered Total %
subroutine 50 54 92.5
pod 0 40 0.0


line count pod subroutine
37 4 n/a BEGIN
39 4 n/a BEGIN
40 4 n/a BEGIN
41 4 n/a BEGIN
42 4 n/a BEGIN
43 4 n/a BEGIN
45 4 n/a BEGIN
47 4 n/a BEGIN
48 4 n/a BEGIN
51 4 n/a BEGIN
52 4 n/a BEGIN
114 862 n/a _ontologyInit
124 862 n/a _loadOntologySummaryIni
131 0 No getOntologySummary
140 0 n/a __ANON__
155 0 No getSummaryCache
159 852 No classifyTranscript
170 446 No getSubstitutionClass
174 1663 No getInsertionClass
178 692 No getDeletionClass
182 598 No getComplexIndelClass
188 1503 No getUnknownVariantClass
192 1103 No getIntronVariantClass
196 4 No getSynonymousVariantClass
200 12 No getNonSynonymousVariantClass
204 14 No getStopGainedVariantClass
208 12 No getStopLostVariantClass
212 0 No getStopRetainedVariantClass
216 30 No getStartLostVariantClass
220 4 No getPrematureStartGainedVariantClass
224 55 No getCodonVariantClass
228 421 No get5PrimeUtrVariantClass
232 292 No get3PrimeUtrVariantClass
236 28 No getNonCodingTranscriptVariantClass
240 944 No getEssentialSpliceSiteVariantClass
244 1232 No getSpliceRegionVariantClass
248 569 No getFrameShiftVariantClass
252 562 No getInFrameVariantClass
256 16 No getInFrameCodonGainVariantClass
260 10 No getInFrameCodonLossVariantClass
264 1024 No getComplexChangeVariantClass
268 1233 No get5KBUpStreamVariantClass
272 1276 No get2KBUpStreamVariantClass
276 1166 No get5KBDownStreamVariantClass
280 1178 No get500BPDownStreamVariantClass
286 1078 No getExonClass
291 1285 No getIntronClass
296 982 No getSpliceRegionClass
301 966 No getEssentialSpliceSiteClass
308 976 No getCDSClass
313 453 No get5PrimeUtrClass
318 293 No get3PrimeUtrClass
325 1448 No getProteinCodingClass
330 222 No getNonProteinCodingClass