Subroutine Coverage

lib/Sanger/CGP/Vagrent/Annotators/DeletionAnnotator.pm
Criterion Covered Total %
subroutine 28 28 100.0
pod n/a


line count pod subroutine
25 2 n/a BEGIN
27 2 n/a BEGIN
29 2 n/a BEGIN
30 2 n/a BEGIN
31 2 n/a BEGIN
32 2 n/a BEGIN
34 2 n/a BEGIN
35 2 n/a BEGIN
37 2 n/a BEGIN
44 282 n/a _getAnnotation
82 278 n/a _generateAnnotatonGroup
138 278 n/a _buildRNAAnnotation
294 505 n/a _upstreamVariantCheck
337 455 n/a _downstreamVariantCheck
380 413 n/a _classifyDeletion
494 86 n/a _getCDSDescriptionString
505 260 n/a _generateDNADelDescriptionString
544 444 n/a _getWildTypeStringForRNAAnno
584 165 n/a _getWildTypeStringForCDSAnno
655 86 n/a _getMutantStringForCDSAnno
660 18 n/a _getMutatedCdsSequence
668 36 n/a _getCdsMinPosForProteinCalculation
679 36 n/a _getCdsMaxPosForProteinCalculation
690 505 n/a _safetyCheck
714 505 n/a _getTranscriptSubstringForCheck
758 505 n/a _getExonicGenomicSubstringForCheck
809 86 n/a _getDefaultCDSAnnotationType
813 3 n/a _getDefaultProteinAnnotationType