Admin_GeneRegionBedDumper.pl - Creates bed files containing regions Vagrent would consider annotatable
Admin_GeneRegionBedDumper.pl [-h] -sp <SPECIES> -as <ASSEMBLY> -c <VAGRENT_> -fai <GENOME_FAI_FILE>
General Options: --help (-h) Brief documentation --species (-sp) Species --assembly (-as) Genome assembly version --fai_file (-fai) Genome fai file, for chromosome names and lengths --cache (-c) Vagrent reference data cache file Optional --version (-v) Output version number --build_index (-i) Generate a zipped and tabix indexed version of the bed file Examples: EnsemblGeneRegionBedFileDumper.pl -s human -g GRCh37 -fai /path/to/genome.fai