line |
count |
pod |
subroutine |
25
|
2 |
n/a |
BEGIN |
27
|
2 |
n/a |
BEGIN |
29
|
2 |
n/a |
BEGIN |
30
|
2 |
n/a |
BEGIN |
31
|
2 |
n/a |
BEGIN |
32
|
2 |
n/a |
BEGIN |
34
|
2 |
n/a |
BEGIN |
35
|
2 |
n/a |
BEGIN |
37
|
2 |
n/a |
BEGIN |
44
|
282 |
n/a |
_getAnnotation |
82
|
278 |
n/a |
_generateAnnotatonGroup |
138
|
278 |
n/a |
_buildRNAAnnotation |
294
|
505 |
n/a |
_upstreamVariantCheck |
337
|
455 |
n/a |
_downstreamVariantCheck |
380
|
413 |
n/a |
_classifyDeletion |
494
|
86 |
n/a |
_getCDSDescriptionString |
505
|
260 |
n/a |
_generateDNADelDescriptionString |
544
|
444 |
n/a |
_getWildTypeStringForRNAAnno |
584
|
165 |
n/a |
_getWildTypeStringForCDSAnno |
655
|
86 |
n/a |
_getMutantStringForCDSAnno |
660
|
18 |
n/a |
_getMutatedCdsSequence |
668
|
36 |
n/a |
_getCdsMinPosForProteinCalculation |
679
|
36 |
n/a |
_getCdsMaxPosForProteinCalculation |
690
|
505 |
n/a |
_safetyCheck |
714
|
505 |
n/a |
_getTranscriptSubstringForCheck |
758
|
505 |
n/a |
_getExonicGenomicSubstringForCheck |
809
|
86 |
n/a |
_getDefaultCDSAnnotationType |
813
|
3 |
n/a |
_getDefaultProteinAnnotationType |