lib/Sanger/CGP/Vagrent.pm
|
n/a
|
100.0
|
n/a
|
100.0
|
lib/Sanger/CGP/Vagrent/Annotators/AbstractAnnotator.pm
|
73.1
|
86.8
|
50.0
|
74.7
|
lib/Sanger/CGP/Vagrent/Annotators/ComplexIndelAnnotator.pm
|
86.2
|
94.1
|
n/a
|
87.3
|
lib/Sanger/CGP/Vagrent/Annotators/DeletionAnnotator.pm
|
87.7
|
100.0
|
n/a
|
88.8
|
lib/Sanger/CGP/Vagrent/Annotators/InsertionAnnotator.pm
|
88.4
|
94.7
|
n/a
|
89.6
|
lib/Sanger/CGP/Vagrent/Annotators/SimpleSubstitutionAnnotator.pm
|
84.5
|
100.0
|
n/a
|
87.6
|
lib/Sanger/CGP/Vagrent/Data/AbstractGenomicPosition.pm
|
61.5
|
76.4
|
90.0
|
71.7
|
lib/Sanger/CGP/Vagrent/Data/AbstractVariation.pm
|
n/a
|
75.0
|
100.0
|
80.0
|
lib/Sanger/CGP/Vagrent/Data/Annotation.pm
|
87.0
|
97.5
|
100.0
|
93.6
|
lib/Sanger/CGP/Vagrent/Data/AnnotationGroup.pm
|
52.0
|
83.3
|
100.0
|
68.2
|
lib/Sanger/CGP/Vagrent/Data/ComplexIndel.pm
|
50.0
|
88.8
|
100.0
|
63.4
|
lib/Sanger/CGP/Vagrent/Data/Deletion.pm
|
45.0
|
87.5
|
100.0
|
61.2
|
lib/Sanger/CGP/Vagrent/Data/Exon.pm
|
0.0
|
75.0
|
100.0
|
60.0
|
lib/Sanger/CGP/Vagrent/Data/Insertion.pm
|
66.6
|
87.5
|
100.0
|
82.3
|
lib/Sanger/CGP/Vagrent/Data/Substitution.pm
|
61.1
|
88.8
|
100.0
|
74.1
|
lib/Sanger/CGP/Vagrent/Data/Transcript.pm
|
9.0
|
77.5
|
90.0
|
54.3
|
lib/Sanger/CGP/Vagrent/Ontology/SequenceOntologyClassifier.pm
|
33.3
|
92.5
|
0.0
|
50.9
|
lib/Sanger/CGP/Vagrent/TranscriptSource/AbstractTranscriptSource.pm
|
0.0
|
76.9
|
100.0
|
60.8
|
lib/Sanger/CGP/Vagrent/TranscriptSource/FileBasedTranscriptSource.pm
|
36.8
|
76.1
|
100.0
|
52.4
|