line |
count |
pod |
subroutine |
37
|
4 |
n/a |
BEGIN |
39
|
4 |
n/a |
BEGIN |
40
|
4 |
n/a |
BEGIN |
41
|
4 |
n/a |
BEGIN |
42
|
4 |
n/a |
BEGIN |
43
|
4 |
n/a |
BEGIN |
45
|
4 |
n/a |
BEGIN |
47
|
4 |
n/a |
BEGIN |
48
|
4 |
n/a |
BEGIN |
51
|
4 |
n/a |
BEGIN |
52
|
4 |
n/a |
BEGIN |
114
|
862 |
n/a |
_ontologyInit |
124
|
862 |
n/a |
_loadOntologySummaryIni |
131
|
0 |
No |
getOntologySummary |
140
|
0 |
n/a |
__ANON__ |
155
|
0 |
No |
getSummaryCache |
159
|
852 |
No |
classifyTranscript |
170
|
446 |
No |
getSubstitutionClass |
174
|
1663 |
No |
getInsertionClass |
178
|
692 |
No |
getDeletionClass |
182
|
598 |
No |
getComplexIndelClass |
188
|
1503 |
No |
getUnknownVariantClass |
192
|
1103 |
No |
getIntronVariantClass |
196
|
4 |
No |
getSynonymousVariantClass |
200
|
12 |
No |
getNonSynonymousVariantClass |
204
|
14 |
No |
getStopGainedVariantClass |
208
|
12 |
No |
getStopLostVariantClass |
212
|
0 |
No |
getStopRetainedVariantClass |
216
|
30 |
No |
getStartLostVariantClass |
220
|
4 |
No |
getPrematureStartGainedVariantClass |
224
|
55 |
No |
getCodonVariantClass |
228
|
421 |
No |
get5PrimeUtrVariantClass |
232
|
292 |
No |
get3PrimeUtrVariantClass |
236
|
28 |
No |
getNonCodingTranscriptVariantClass |
240
|
944 |
No |
getEssentialSpliceSiteVariantClass |
244
|
1232 |
No |
getSpliceRegionVariantClass |
248
|
569 |
No |
getFrameShiftVariantClass |
252
|
562 |
No |
getInFrameVariantClass |
256
|
16 |
No |
getInFrameCodonGainVariantClass |
260
|
10 |
No |
getInFrameCodonLossVariantClass |
264
|
1024 |
No |
getComplexChangeVariantClass |
268
|
1233 |
No |
get5KBUpStreamVariantClass |
272
|
1276 |
No |
get2KBUpStreamVariantClass |
276
|
1166 |
No |
get5KBDownStreamVariantClass |
280
|
1178 |
No |
get500BPDownStreamVariantClass |
286
|
1078 |
No |
getExonClass |
291
|
1285 |
No |
getIntronClass |
296
|
982 |
No |
getSpliceRegionClass |
301
|
966 |
No |
getEssentialSpliceSiteClass |
308
|
976 |
No |
getCDSClass |
313
|
453 |
No |
get5PrimeUtrClass |
318
|
293 |
No |
get3PrimeUtrClass |
325
|
1448 |
No |
getProteinCodingClass |
330
|
222 |
No |
getNonProteinCodingClass |