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NAME

Sanger::CGP::Vagrent::GenomicRegionDumper::SubstitutionGenomicRegionDumper - Class for saving regions of the genome that would provide annotations for Substitution variation types.

DESCRIPTION

This is an implementation of the AbstractGenomicRegionDumper to handle substitution type variants, ie any kind of variant that cannot have an effect on sequence length and only effect a single wildtype base

Using the supplied TranscriptSource, Transcripts that could generate annotations are selected and the relevent genomic regions are saved to the specified GenomicRegionWriter

Inherits from Sanger::CGP::Vagrent::GenomicRegionDumper::AbstractGenomicRegionDumper.

METHODS

See Sanger::CGP::Vagrent::GenomicRegionDumper::AbstractGenomicRegionDumper

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