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NAME

Sanger::CGP::Vagrent::Bookmarkers::RepresentativeTranscriptBookmarker - Finds the AnnotationGroup on the best, most representative Transcript from the supplied list.

DESCRIPTION

This bookmarker will mark/return the Sanger::CGP::Vagrent::Data::AnnotationGroup linked to the transcript thats the most reliable and complete representation of a gene.

It inherits from Sanger::CGP::Vagrent::Bookmarkers::AbstractBookmarker.

When handed an array of Sanger::CGP::Vagrent::Data::AnnotationGroup objects it will sort them using the following criteria

The top answer is then returned as the matching Sanger::CGP::Vagrent::Data::AnnotationGroup.

NOTE

This is calculated using the transcript information only, there is no consideration given to variants that are annotated to multiple genes. Only a single Sanger::CGP::Vagrent::Data::AnnotationGroup will be returned even if the input data contained annotation against multiple genes.

METHODS

see Sanger::CGP::Vagrent::Bookmarkers::AbstractBookmarker

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