lib/Sanger/CGP/Vagrent/Data/Transcript.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
subroutine | 31 | 40 | 77.5 |
pod | 27 | 30 | 90.0 |
line | count | pod | subroutine |
---|---|---|---|
25 | 4 | n/a | BEGIN |
26 | 4 | n/a | BEGIN |
27 | 4 | n/a | BEGIN |
28 | 4 | n/a | BEGIN |
29 | 4 | n/a | BEGIN |
30 | 4 | n/a | BEGIN |
32 | 4 | n/a | BEGIN |
46 | 0 | Yes | new |
55 | 0 | n/a | _init |
109 | 818 | No | getAllGeneTypes |
113 | 5808 | Yes | getGeneType |
117 | 1636 | Yes | getCCDS |
121 | 1636 | Yes | getGeneName |
125 | 5858 | Yes | getAccession |
129 | 2518 | Yes | getAccessionVersion |
133 | 882 | Yes | getProteinAccession |
137 | 882 | Yes | getProteinAccessionVersion |
141 | 3400 | Yes | getDatabase |
145 | 3400 | Yes | getDatabaseVersion |
149 | 1745 | Yes | getExons |
150 | 33955 | n/a | __ANON__ |
154 | 519 | No | getExonsGenomicOrder |
155 | 10490 | n/a | __ANON__ |
159 | 19488 | Yes | getStrand |
163 | 1052 | Yes | getcDNASeq |
167 | 1344 | Yes | getCdsSeq |
172 | 441 | Yes | getCdsPhase |
176 | 3670 | Yes | getCdsMinPos |
180 | 3486 | Yes | getCdsMaxPos |
184 | 745 | Yes | getCdsLength |
192 | 0 | No | getmRNALength |
205 | 0 | Yes | getGenomicMinPos |
209 | 0 | Yes | getGenomicMaxPos |
213 | 4172 | Yes | isProteinCoding |
221 | 707 | Yes | getProteinCodingType |
225 | 0 | Yes | getMicroRnaType |
229 | 111 | Yes | getLincRnaType |
233 | 0 | Yes | getSnoRnaType |
237 | 0 | Yes | getSnRnaType |
241 | 0 | Yes | getRRnaType |