# This file was produced by bcftools stats (1.17+htslib-1.17) and can be plotted using plot-vcfstats.
# The command line was:	bcftools stats  --threads 3 --fasta-ref ../colorsdb_resources/GRCh38/human_GRCh38_no_alt_analysis_set.fasta CoLoRSdb.GRCh38.v1.0.0.pbsv.jasmine.vcf.gz
#
# Definition of sets:
# ID	[2]id	[3]tab-separated file names
ID	0	CoLoRSdb.GRCh38.v1.0.0.pbsv.jasmine.vcf.gz
# SN, Summary numbers:
#   number of records   .. number of data rows in the VCF
#   number of no-ALTs   .. reference-only sites, ALT is either "." or identical to REF
#   number of SNPs      .. number of rows with a SNP
#   number of MNPs      .. number of rows with a MNP, such as CC>TT
#   number of indels    .. number of rows with an indel
#   number of others    .. number of rows with other type, for example a symbolic allele or
#                          a complex substitution, such as ACT>TCGA
#   number of multiallelic sites     .. number of rows with multiple alternate alleles
#   number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs
# 
#   Note that rows containing multiple types will be counted multiple times, in each
#   counter. For example, a row with a SNP and an indel increments both the SNP and
#   the indel counter.
# 
# SN	[2]id	[3]key	[4]value
SN	0	number of samples:	0
SN	0	number of records:	423672
SN	0	number of no-ALTs:	0
SN	0	number of SNPs:	0
SN	0	number of MNPs:	0
SN	0	number of indels:	422941
SN	0	number of others:	731
SN	0	number of multiallelic sites:	0
SN	0	number of multiallelic SNP sites:	0
# TSTV, transitions/transversions:
# TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
TSTV	0	0	0	0.00	0	0	0.00
# ICS, Indel context summary:
# ICS	[2]id	[3]repeat-consistent	[4]repeat-inconsistent	[5]not applicable	[6]c/(c+i) ratio
ICS	0	101433	35973	285535	0.7382
# ICL, Indel context by length:
# ICL	[2]id	[3]length of repeat element	[4]repeat-consistent deletions)	[5]repeat-inconsistent deletions	[6]consistent insertions	[7]inconsistent insertions	[8]c/(c+i) ratio
ICL	0	2	28333	7140	35097	8495	0.8023
ICL	0	3	2902	2566	3778	3336	0.5309
ICL	0	4	10252	3199	11291	4247	0.7431
ICL	0	5	3150	1169	4461	1524	0.7386
ICL	0	6	423	708	732	941	0.4119
ICL	0	7	107	324	169	477	0.2563
ICL	0	8	132	370	168	461	0.2653
ICL	0	9	56	232	83	292	0.2097
ICL	0	10	131	224	168	268	0.3780
# SiS, Singleton stats:
# SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
SiS	0	1	0	0	0	0	0	0	0
# AF, Stats by non-reference allele frequency:
# AF	[2]id	[3]allele frequency	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
AF	0	0.000000	0	0	0	248567	49927	19129	179511
AF	0	0.010000	0	0	0	35818	9604	2988	23226
AF	0	0.020000	0	0	0	16702	4728	1498	10476
AF	0	0.030000	0	0	0	10723	3237	968	6518
AF	0	0.040000	0	0	0	7837	2394	736	4707
AF	0	0.050000	0	0	0	6307	1931	610	3766
AF	0	0.060000	0	0	0	5251	1562	529	3160
AF	0	0.070000	0	0	0	4498	1446	374	2678
AF	0	0.080000	0	0	0	3968	1246	381	2341
AF	0	0.090000	0	0	0	3485	1059	346	2080
AF	0	0.100000	0	0	0	3393	1011	355	2027
AF	0	0.110000	0	0	0	3051	936	288	1827
AF	0	0.120000	0	0	0	2865	918	261	1686
AF	0	0.130000	0	0	0	2641	819	272	1550
AF	0	0.140000	0	0	0	2361	685	233	1443
AF	0	0.150000	0	0	0	2335	740	233	1362
AF	0	0.160000	0	0	0	2122	669	198	1255
AF	0	0.170000	0	0	0	2140	715	198	1227
AF	0	0.180000	0	0	0	1995	648	181	1166
AF	0	0.190000	0	0	0	1834	552	199	1083
AF	0	0.200000	0	0	0	1690	554	186	950
AF	0	0.210000	0	0	0	1744	587	149	1008
AF	0	0.220000	0	0	0	1604	530	149	925
AF	0	0.230000	0	0	0	1573	548	139	886
AF	0	0.240000	0	0	0	1473	463	154	856
AF	0	0.250000	0	0	0	1510	487	137	886
AF	0	0.260000	0	0	0	1411	465	126	820
AF	0	0.270000	0	0	0	1422	452	143	827
AF	0	0.280000	0	0	0	1295	430	135	730
AF	0	0.290000	0	0	0	1208	386	125	697
AF	0	0.300000	0	0	0	1176	368	147	661
AF	0	0.310000	0	0	0	1181	369	125	687
AF	0	0.320000	0	0	0	1084	338	111	635
AF	0	0.330000	0	0	0	1132	384	113	635
AF	0	0.340000	0	0	0	1092	345	106	641
AF	0	0.350000	0	0	0	976	314	92	570
AF	0	0.360000	0	0	0	1065	330	115	620
AF	0	0.370000	0	0	0	986	317	101	568
AF	0	0.380000	0	0	0	982	288	104	590
AF	0	0.390000	0	0	0	935	268	111	556
AF	0	0.400000	0	0	0	874	284	85	505
AF	0	0.410000	0	0	0	847	279	92	476
AF	0	0.420000	0	0	0	864	264	83	517
AF	0	0.430000	0	0	0	811	262	91	458
AF	0	0.440000	0	0	0	820	258	82	480
AF	0	0.450000	0	0	0	815	232	88	495
AF	0	0.460000	0	0	0	828	258	79	491
AF	0	0.470000	0	0	0	811	246	84	481
AF	0	0.480000	0	0	0	759	229	88	442
AF	0	0.490000	0	0	0	769	244	71	454
AF	0	0.500000	0	0	0	724	222	75	427
AF	0	0.510000	0	0	0	711	222	67	422
AF	0	0.520000	0	0	0	654	191	64	399
AF	0	0.530000	0	0	0	666	194	78	394
AF	0	0.540000	0	0	0	640	188	79	373
AF	0	0.550000	0	0	0	640	180	81	379
AF	0	0.560000	0	0	0	667	191	88	388
AF	0	0.570000	0	0	0	625	210	71	344
AF	0	0.580000	0	0	0	645	198	77	370
AF	0	0.590000	0	0	0	549	153	76	320
AF	0	0.600000	0	0	0	546	159	65	322
AF	0	0.610000	0	0	0	525	160	68	297
AF	0	0.620000	0	0	0	575	172	77	326
AF	0	0.630000	0	0	0	522	150	74	298
AF	0	0.640000	0	0	0	463	135	53	275
AF	0	0.650000	0	0	0	515	146	67	302
AF	0	0.660000	0	0	0	448	128	64	256
AF	0	0.670000	0	0	0	466	143	42	281
AF	0	0.680000	0	0	0	446	128	53	265
AF	0	0.690000	0	0	0	451	132	55	264
AF	0	0.700000	0	0	0	456	129	45	282
AF	0	0.710000	0	0	0	444	104	57	283
AF	0	0.720000	0	0	0	395	123	47	225
AF	0	0.730000	0	0	0	394	112	52	230
AF	0	0.740000	0	0	0	405	123	48	234
AF	0	0.750000	0	0	0	398	113	46	239
AF	0	0.760000	0	0	0	372	113	44	215
AF	0	0.770000	0	0	0	349	99	46	204
AF	0	0.780000	0	0	0	322	85	36	201
AF	0	0.790000	0	0	0	336	98	39	199
AF	0	0.800000	0	0	0	310	86	37	187
AF	0	0.810000	0	0	0	321	86	44	191
AF	0	0.820000	0	0	0	310	86	36	188
AF	0	0.830000	0	0	0	313	89	39	185
AF	0	0.840000	0	0	0	316	88	49	179
AF	0	0.850000	0	0	0	301	74	45	182
AF	0	0.860000	0	0	0	270	76	35	159
AF	0	0.870000	0	0	0	254	61	34	159
AF	0	0.880000	0	0	0	263	65	40	158
AF	0	0.890000	0	0	0	253	53	36	164
AF	0	0.900000	0	0	0	269	54	40	175
AF	0	0.910000	0	0	0	244	57	23	164
AF	0	0.920000	0	0	0	251	57	28	166
AF	0	0.930000	0	0	0	258	60	36	162
AF	0	0.940000	0	0	0	295	56	33	206
AF	0	0.950000	0	0	0	331	64	45	222
AF	0	0.960000	0	0	0	410	78	47	285
AF	0	0.970000	0	0	0	514	78	66	370
AF	0	0.980000	0	0	0	472	58	38	376
AF	0	0.990000	0	0	0	7	0	0	7
# QUAL, Stats by quality
# QUAL	[2]id	[3]Quality	[4]number of SNPs	[5]number of transitions (1st ALT)	[6]number of transversions (1st ALT)	[7]number of indels
QUAL	0	.	0	0	0	422941
# IDD, InDel distribution:
# IDD	[2]id	[3]length (deletions negative)	[4]number of sites	[5]number of genotypes	[6]mean VAF
IDD	0	-60	74293	0	.
IDD	0	-59	510	0	.
IDD	0	-58	666	0	.
IDD	0	-57	600	0	.
IDD	0	-56	788	0	.
IDD	0	-55	547	0	.
IDD	0	-54	920	0	.
IDD	0	-53	634	0	.
IDD	0	-52	908	0	.
IDD	0	-51	792	0	.
IDD	0	-50	1147	0	.
IDD	0	-49	1612	0	.
IDD	0	-48	1342	0	.
IDD	0	-47	811	0	.
IDD	0	-46	1056	0	.
IDD	0	-45	912	0	.
IDD	0	-44	1280	0	.
IDD	0	-43	883	0	.
IDD	0	-42	1405	0	.
IDD	0	-41	1191	0	.
IDD	0	-40	2433	0	.
IDD	0	-39	1336	0	.
IDD	0	-38	1710	0	.
IDD	0	-37	1536	0	.
IDD	0	-36	2273	0	.
IDD	0	-35	1581	0	.
IDD	0	-34	2230	0	.
IDD	0	-33	1669	0	.
IDD	0	-32	3373	0	.
IDD	0	-31	1977	0	.
IDD	0	-30	3885	0	.
IDD	0	-29	2323	0	.
IDD	0	-28	5200	0	.
IDD	0	-27	3332	0	.
IDD	0	-26	5683	0	.
IDD	0	-25	4531	0	.
IDD	0	-24	10586	0	.
IDD	0	-23	4925	0	.
IDD	0	-22	9475	0	.
IDD	0	-21	7003	0	.
IDD	0	-20	22614	0	.
IDD	0	20	45034	0	.
IDD	0	21	12542	0	.
IDD	0	22	13883	0	.
IDD	0	23	6440	0	.
IDD	0	24	12319	0	.
IDD	0	25	5348	0	.
IDD	0	26	6207	0	.
IDD	0	27	3636	0	.
IDD	0	28	5887	0	.
IDD	0	29	2672	0	.
IDD	0	30	4852	0	.
IDD	0	31	2280	0	.
IDD	0	32	3922	0	.
IDD	0	33	1834	0	.
IDD	0	34	2735	0	.
IDD	0	35	1767	0	.
IDD	0	36	2809	0	.
IDD	0	37	1397	0	.
IDD	0	38	1804	0	.
IDD	0	39	1127	0	.
IDD	0	40	2031	0	.
IDD	0	41	979	0	.
IDD	0	42	1377	0	.
IDD	0	43	773	0	.
IDD	0	44	1206	0	.
IDD	0	45	783	0	.
IDD	0	46	908	0	.
IDD	0	47	653	0	.
IDD	0	48	1181	0	.
IDD	0	49	932	0	.
IDD	0	50	959	0	.
IDD	0	51	606	0	.
IDD	0	52	846	0	.
IDD	0	53	484	0	.
IDD	0	54	768	0	.
IDD	0	55	463	0	.
IDD	0	56	708	0	.
IDD	0	57	517	0	.
IDD	0	58	600	0	.
IDD	0	59	390	0	.
IDD	0	60	75310	0	.
# ST, Substitution types:
# ST	[2]id	[3]type	[4]count
ST	0	A>C	0
ST	0	A>G	0
ST	0	A>T	0
ST	0	C>A	0
ST	0	C>G	0
ST	0	C>T	0
ST	0	G>A	0
ST	0	G>C	0
ST	0	G>T	0
ST	0	T>A	0
ST	0	T>C	0
ST	0	T>G	0
# DP, Depth distribution
# DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)